Effect of the reaction field electrostatic term on the molecular dynamics simulation of the activation domain of procarboxypeptidase B (Englisch)
- Neue Suche nach: Gargallo, R.
- Neue Suche nach: Oliva, B.
- Neue Suche nach: Querol, E.
- Neue Suche nach: Aviles, F. X.
- Neue Suche nach: Gargallo, R.
- Neue Suche nach: Oliva, B.
- Neue Suche nach: Querol, E.
- Neue Suche nach: Aviles, F. X.
In:
PROTEIN ENGINEERING -OXFORD-
;
13
;
21-26
;
2000
-
ISSN:
- Aufsatz (Zeitschrift) / Print
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Titel:Effect of the reaction field electrostatic term on the molecular dynamics simulation of the activation domain of procarboxypeptidase B
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Beteiligte:Gargallo, R. ( Autor:in ) / Oliva, B. ( Autor:in ) / Querol, E. ( Autor:in ) / Aviles, F. X. ( Autor:in )
-
Erschienen in:PROTEIN ENGINEERING -OXFORD- ; 13 ; 21-26
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Verlag:
- Neue Suche nach: IRL PRESS
-
Erscheinungsdatum:01.01.2000
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Format / Umfang:6 pages
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ISSN:
-
Medientyp:Aufsatz (Zeitschrift)
-
Format:Print
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Sprache:Englisch
- Neue Suche nach: 660.63
- Weitere Informationen zu Dewey Decimal Classification
-
Klassifikation:
DDC: 660.63 -
Datenquelle:
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ORIGINAL ARTICLES - Effect of the reaction field electrostatic term on the molecular dynamics simulation of the activation domain of procarboxypeptidase BGargallo, R. et al. | 2000
- 21
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Effect of the reaction field electrostatic term on the molecular dynamics simulation of the activation domain of procarboxypeptidase BGargallo, R. / Oliva, B. / Querol, E. / Aviles, F. X. et al. | 2000
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Effects of pore mutations and permeant ion concentration on the spontaneous gating activity of OmpC porinLiu, N. / Samartzidou, H. / Lee, K. W. / Briggs, J. M. / Delcour, A. H. et al. | 2000
- 501
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Thermal unfolding and conformational stability of the recombinant domain II of glutamate dehydrogenase from the hyperthermophile Thermotoga maritimaConsalvi, V. / Chiaraluce, R. / Giangiacomo, L. / Scandurra, R. / Christova, P. / Karshikoff, A. / Knapp, S. / Ladenstein, R. et al. | 2000
- 501
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ORIGINAL ARTICLES - Thermal unfolding and conformational stability of the recombinant domain II of glutamate dehydrogenase from the hyperthermophile Thermotoga maritimaConsalvi, V. et al. | 2000
- 509
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Conversion of the maltogenic alpha-amylase Novamyl into a CGTaseBeier, L. / Svendsen, A. / Andersen, C. / Frandsen, T. P. / Borchert, T. V. / Cherry, J. R. et al. | 2000
- 509
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ORIGINAL ARTICLES - Conversion of the maltogenic a-amylase Novamyl into a CGTaseBeier, L. et al. | 2000
- 515
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ORIGINAL ARTICLES - Engineering the active center of the 6-phospho-b-galactosidase from Lactococcus lactisSchulte, D. et al. | 2000
- 515
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Engineering the active center of the 6-phospho-beta-galactosidase from Lactococcus lactisSchulte, D. / Hengstenberg, W. et al. | 2000
- 519
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ORIGINAL ARTICLES - Functional expression and affinity selection of single-chain Cro by phage display: Isolation of novel DNA-binding proteinsNilsson, M.T.I. et al. | 2000
- 519
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Functional expression and affinity selection of single-chain Cro by phage display: isolation of novel DNA-binding proteinsNilsson, M. T. I. / Mossing, M. C. / Widersten, M. et al. | 2000
- 527
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ORIGINAL ARTICLES - The initial step of the thermal unfolding of 3-isopropylmalate dehydrogenase detected by the temperature-jump Laue methodHori, T. et al. | 2000
- 527
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The initial step of the thermal unfolding of 3-isopropylmalate dehydrogenase detected by the temperature-jump Laue methodHori, T. / Moriyama, H. / Kawaguchi, J. / Hayashi-Iwasaki, Y. / Oshima, T. / Tanaka, N. et al. | 2000
- 535
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Protein structure alignment using environmental profilesJung, J. / Lee, B. et al. | 2000
- 535
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ORIGINAL ARTICLES - Protein structure alignment using environmental profilesJung, J. et al. | 2000
- 545
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ORIGINAL ARTICLES - Structure-derived substitution matrices for alignment of distantly related sequencesPrlic, A. et al. | 2000
- 545
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Structure-derived substitution matrices for alignment of distantly related sequencesPrlic, A. / Domingues, F. S. / Sippl, M. J. et al. | 2000
- 551
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Structure and interactional homology of clinically potential trypsin inhibitors: molecular modelling of Cucurbitaceae family peptides using the X-ray structure of MCT-IIChakraborty, S. / Bhattacharya, S. / Ghosh, S. / Bera, A. K. / Haldar, U. / Pal, A. K. / Mukhopadhyay, B. P. / Banerjee, A. et al. | 2000
- 551
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ORIGINAL ARTICLES - Structure and interactional homology of clinically potential trypsin inhibitors: Molecular modelling of Cucurbitaceae family peptides using the X-ray structure of MCT-IIChakraborty, S. et al. | 2000
- 557
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Replacement set mutagenesis of the four phosphate-binding arginine residues of thymidylate synthaseKawase, S. / Cho, S.-W. / Rozelle, J. / Stroud, R. M. / Finer-Moore, J. / Santi, D. V. et al. | 2000
- 557
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ORIGINAL ARTICLES - Replacement set mutagenesis of the four phosphate-binding arginine residues of thymidylate synthaseKawase, S. et al. | 2000
- 565
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ORIGINAL ARTICLES - ScFv multimers of the anti-neuraminidase antibody NC10: Shortening of the linker in single-chain Fv fragment assembled in VL to VH orientation drives the formation of dimers, trimers, tetramers and higher molecular mass multimersDolezal, O. et al. | 2000
- 565
-
ScFv multimers of the anti-neuraminidase antibody NC10: shortening of the linker in single-chain Fv fragment assembled in V~L to V~H orientation drives the formation of dimers, trimers, tetramers and higher molecular mass multimersDolezal, O. / Pearce, L. A. / Lawrence, L. J. / McCoy, A. J. / Hudson, P. J. / Kortt, A. A. et al. | 2000
- 575
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ORIGINAL ARTICLES - Characterization of diphtheria fusion proteins targeted to the human interleukin-3 receptorFrankel, A.E. et al. | 2000
- 575
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Characterization of diphtheria fusion proteins targeted to the human interleukin-3 receptorFrankel, A. E. / Ramage, J. / Kiser, M. / Alexander, R. / Kucera, G. / Miller, M. S. et al. | 2000
- 583
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ORIGINAL ARTICLES - Construction of a diabody (small recombinant bispecific antibody) using a refolding systemTakemura, S. et al. | 2000
- 583
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Construction of a diabody (small recombinant bispecific antibody) using a refolding systemTakemura, S. / Asano, R. / Tsumoto, K. / Ebara, S. / Sakurai, N. / Katayose, Y. / Kodama, H. / Yoshida, H. / Suzuki, M. / Imai, K. et al. | 2000
- 589
-
Phages from landscape libraries as substitute antibodiesPetrenko, V. A. / Smith, G. P. et al. | 2000
- 589
-
ORIGINAL ARTICLES - Phages from landscape libraries as substitute antibodiesPetrenko, V.A. et al. | 2000
- 593
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ORIGINAL ARTICLES - Characterization of function and activity of domains A, B and C of xylanase C from Fibrobacter succinogenes S85Marrone, L. et al. | 2000
- 593
-
Characterization of function and activity of domains A, B and C of xylanase C from Fibrobacter succinogenes S85Marrone, L. / McAllister, K. A. / Clarke, A. J. et al. | 2000
- 602
-
Corrigendum| 2000
- 603
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COMMUNICATIONS - Prokink: A protocol for numerical evaluation of helix distortions by prolineVisiers, I. et al. | 2000
- 603
-
Prokink: a protocol for numerical evaluation of helix distortions by prolineVisiers, I. / Braunheim, B. B. / Weinstein, H. et al. | 2000
- 607
-
Predicting residue solvent accessibility from protein sequence by considering the sequence environmentCarugo, O. et al. | 2000
- 607
-
COMMUNICATIONS - Predicting residue solvent accessibility from protein sequence by considering the sequence environmentCarugo, O. et al. | 2000
- 611
-
COMMUNICATIONS - Functional EGFP-dystrophin fusion proteins for gene therapy vector developmentChapdelaine, P. et al. | 2000
- 611
-
Functional EGFP-dystrophin fusion proteins for gene therapy vector developmentChapdelaine, P. / Moisset, P.-A. / Campeau, P. / Asselin, I. / Vilquin, J.-T. / Tremblay, J. P. et al. | 2000
- 617
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Binding and folding: in search of intramolecular chaperone-like building block fragmentsMa, B. / Tsai, C.-J. / Nussinov, R. et al. | 2000
- 617
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ORIGINAL ARTICLES - Binding and folding: In search of intramolecular chaperone-like building block fragmentsMa, B. et al. | 2000
- 629
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ORIGINAL ARTICLES - A study of energetics of cooperative interaction using a mutant l-repressorJana, N.K. et al. | 2000
- 629
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A study of energetics of cooperative interaction using a mutant Lambda-repressorJana, N. K. / Deb, S. / Bhattacharyya, B. / Mandal, N. C. / Roy, S. et al. | 2000
- 635
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Role of Q190 of MuLV RT in ddNTP resistance and fidelity of DNA synthesis: a molecular model of interactions with substratesSingh, K. / Kaushik, N. / Jin, J. / Madhusudanan, M. / Modak, M. J. et al. | 2000
- 635
-
ORIGINAL ARTICLES - Role of Q190 of MuLV RT in ddNTP resistance and fidelity of DNA synthesis: A molecular model of interactions with substratesSingh, K. et al. | 2000
- 645
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ORIGINAL ARTICLES - Domain exchange: Chimeras of Thermus aquaticus DNA polymerase, Escherichia coli DNA polymerase I and Thermotoga neapolitana DNA polymeraseVillbrandt, B. et al. | 2000
- 645
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Domain exchange: chimeras of Thermus aquaticus DNA polymerase, Escherichia coli DNA polymerase I and Thermotoga neapolitana DNA polymeraseVillbrandt, B. / Sobek, H. / Frey, B. / Schomburg, D. et al. | 2000
- 655
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ORIGINAL ARTICLES - Replacement and deletion mutations in the catalytic domain and belt region of Aspergillus awamori glucoamylase to enhance thermostabilityLiu, H.-L. et al. | 2000
- 655
-
Replacement and deletion mutations in the catalytic domain and belt region of Aspergillus awamori glucoamylase to enhance thermostabilityLiu, H.-L. / Doleyres, Y. / Coutinho, P. M. / Ford, C. / Reilly, P. J. et al. | 2000
- 661
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ORIGINAL ARTICLES - Apo(a)-kringle IV-type 6: Expression in Escherichia coli, purification and in vitro refoldingHrzenjak, A. et al. | 2000
- 661
-
Apo(a)-kringle IV-type 6: expression in Escherichia coli, purification and in vitro refoldingHrzenjak, A. / Frank, S. / Maderegger, B. / Sterk, H. / Kostner, G. M. et al. | 2000
- 667
-
COMMUNICATION - The 2000 Olympic Games of protein structure prediction; fully automated programs are being evaluated vis-a-vis human teams in the protein structure prediction experiment CAFASR2Fischer, D. et al. | 2000
- 667
-
The 2000 Olympic Games of protein structure prediction; fully automated programs are being evaluated vis-a-vis human teams in the protein structure prediction experiment CAFASP2Fischer, D. / Elofsson, A. / Rychlewski, L. et al. | 2000
- 671
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ORIGINAL ARTICLES - Mapping protein sequence spaces by recurrence quantification analysis: A case study on chimeric structuresGiuliani, A. et al. | 2000
- 671
-
Mapping protein sequence spaces by recurrence quantification analysis: a case study on chimeric structuresGiuliani, A. / Sirabella, P. / Benigni, R. / Colosimo, A. et al. | 2000
- 679
-
Disulfide recognition in an optimized threading potentialDombkowski, A. A. / Crippen, G. M. et al. | 2000
- 679
-
ORIGINAL ARTICLES - Disulfide recognition in an optimized threading potentialDombkowski, A.A. et al. | 2000
- 691
-
Relationship between local structure and stability in hen egg white lysozyme mutant with alanine substituted for glycineMasumoto, K. / Ueda, T. / Motoshima, H. / Imoto, T. et al. | 2000
- 691
-
ORIGINAL ARTICLES - Relationship between local structure and stability in hen egg white lysozyme mutant with alanine substituted for glycineMasumoto, K. et al. | 2000
- 697
-
ORIGINAL ARTICLES - Structural and thermodynamic consequences of introducing a-aminoisobutyric acid in the S peptide of ribonuclease SRatnaparkhi, G.S. et al. | 2000
- 697
-
Structural and thermodynamic consequences of introducing alpha-aminoisobutyric acid in the S peptide of ribonuclease SRatnaparkhi, G. S. / Awasthi, S. K. / Rani, P. / Balaram, P. / Varadarajan, R. et al. | 2000
- 703
-
ORIGINAL ARTICLES - Charge engineering of a protein domain to allow efficient ion-exchange recoveryGräslund, T. et al. | 2000
- 703
-
Charge engineering of a protein domain to allow efficient ion-exchange recoveryGraslund, T. / Lundin, G. / Uhlen, M. / Nygren, P.-A. / Hober, S. et al. | 2000
- 711
-
Analysis of the psychrotolerant property of hormone-sensitive lipase through site-directed mutagenesisLaurell, H. / Contreras, J. A. / Castan, I. / Langin, D. / Holm, C. et al. | 2000
- 711
-
ORIGINAL ARTICLES - Analysis of the psychrotolerant property of hormone- sensitive lipase through site-directed mutagenesisLaurell, H. et al. | 2000
- 719
-
ORIGINAL ARTICLES - Control of antibody-antigen interaction using anion- induced conformational change in antigen peptideKatakura, Y. et al. | 2000
- 719
-
Control of antibody-antigen interaction using anion-induced conformational change in antigen peptideKatakura, Y. / Miyazaki, T. / Wada, H. / Omasa, T. / Kishimoto, M. / Goto, Y. / Suga, K.-i. et al. | 2000
- 725
-
Expression of a bispecific dsFv-dsFv' antibody fragment in Escherichia coliSchmiedl, A. / Breitling, F. / Dubel, S. et al. | 2000
- 725
-
ORIGINAL ARTICLES - Expression of a bispecific dsFv-dsFv' antibody fragment in Escherichia coliSchmiedl, A. et al. | 2000
- 735
-
Minor structural consequences of alternative CUG codon usage (Ser for Leu) in Candida albicans exoglucanaseCutfield, J. F. / Sullivan, P. A. / Cutfield, S. M. et al. | 2000
- 735
-
ORIGINAL ARTICLES - Minor structural consequences of alternative CUG codon usage (Ser for Leu) in Candida albicans exoglucanaseCutfield, J.F. et al. | 2000
- 739
-
Trifluoroethanol may form a solvent matrix for assisted hydrophobic interactions between peptide side chainsReierson, H. / Rees, A. R. et al. | 2000
- 739
-
ORIGINAL ARTICLES - Trifluoroethanol may form a solvent matrix for assisted hydrophobic interactions between peptide side chainsReierson, H. et al. | 2000
- 745
-
ProSup: a refined tool for protein structure alignmentLackner, P. / Koppensteiner, W. A. / Sippl, M. J. / Domingues, F. S. et al. | 2000
- 745
-
ORIGINAL ARTICLES - ProSup: A refined tool for protein structure alignmentLackner, P. et al. | 2000
- 753
-
ORIGINAL ARTICLES - Aromatic clusters: A determinant of thermal stability of thermophilic proteinsKannan, N. et al. | 2000
- 753
-
Aromatic clusters: a determinant of thermal stability of thermophilic proteinsKannan, N. / Vishveshwara, S. et al. | 2000
- 763
-
Spring mechanics of alpha-helical polypeptideIdiris, A. / Alam, M. T. / Ikai, A. et al. | 2000
- 763
-
ORIGINAL ARTICLES - Spring mechanics of a-helical polypeptideIdiris, A. et al. | 2000
- 771
-
A triangle lattice model that predicts transmembrane helix configuration using a polar jigsaw puzzleHirokawa, T. / Uechi, J. / Sasamoto, H. / Suwa, M. / Mitaku, S. et al. | 2000
- 771
-
ORIGINAL ARTICLES - A triangle lattice model that predicts transmembrane helix configuration using a polar jigsaw puzzleHirokawa, T. et al. | 2000
- 779
-
ORIGINAL ARTICLES - Four new monomeric insulins obtained by alanine scanning the dimer-forming surface of the insulin moleculeChen, H. et al. | 2000
- 779
-
Four new monomeric insulins obtained by alanine scanning the dimer-forming surface of the insulin moleculeChen, H. / Shi, M. / Guo, Z.-Y. / Tang, Y.-H. / Qiao, Z.-S. / Liang, Z.-H. / Feng, Y.-M. et al. | 2000
- 783
-
ORIGINAL ARTICLES - Effects of mutations in the calcium-binding sites of recoverin on its calcium affinity: Evidence for successive filling of the calcium binding sitesPermyakov, S.E. et al. | 2000
- 783
-
Effects of mutations in the calcium-binding sites of recoverin on its calcium affinity: evidence for successive filling of the calcium binding sitesPermyakov, S. E. / Cherskaya, A. M. / Senin, I. I. / Zargarov, A. A. / Shulga-Morskoy, S. V. / Alekseev, A. M. / Zinchenko, D. V. / Lipkin, V. M. / Philippov, P. P. / Uversky, V. N. et al. | 2000
- 791
-
Possible role of two phenylalanine residues in the active site of human cytidine deaminaseVincenzetti, S. / Cambi, A. / Maury, G. / Bertorelle, F. / Gaubert, G. / Neuhard, J. / Natalini, P. / Salvatori, D. / De Sanctis, G. / Vita, A. et al. | 2000
- 791
-
ORIGINAL ARTICLES - Possible role of two phenylalanine residue in the active site of human cytidine deaminaseVincenzetti, S. et al. | 2000
- 801
-
Analysis of binding of the family 2a carbohydrate-binding module from Cellulomonas fimi xylanase 10A to cellulose: specificity and identification of functionally important amino acid residuesMcLean, B. W. / Bray, M. R. / Boraston, A. B. / Gilkes, N. R. / Haynes, C. A. / Kilburn, D. G. et al. | 2000
- 801
-
ORIGINAL ARTICLES - Analysis of binding of the family 2a carbohydrate-binding module from Cellulomonas fimi xylanase 10A to cellulose: Specificity and identification of functionally important amino acid residuesMcLean, B.W. et al. | 2000
- 811
-
Functional expression in insect cells, one-step purification and characterization of a recombinant phospholipase D from cowpea (Vigna unguiculata L. Walp)El Maarouf, H. / Carriere, F. / Riviere, M. / Abousalham, A. et al. | 2000
- 811
-
ORIGINAL ARTICLES - Functional expression in insect cells, one-step purification and characterization of a recombinant phospholipase D from cowpea (Vigna unguiculata L. Walp)Maarouf, H.El et al. | 2000
- 819
-
WAM: an improved algorithm for modelling antibodies on the WEBWhitelegg, N. R. J. / Rees, A. R. et al. | 2000
- 819
-
ORIGINAL ARTICLES - WAM: An improved algorithm for modelling antibodies on the WEBWhitelegg, N.R.J. et al. | 2000
- 825
-
Experimental evidence for the correlation of bond distances in peptide groups detected in ultrahigh-resolution protein structuresEsposito, L. / Vitagliano, L. / Zagari, A. / Mazzarella, L. et al. | 2000
- 825
-
ORIGINAL ARTICLES - Experimental evidence for the correlation of bond distances in peptide groups detected in ultrahigh-resolution protein structuresEsposito, L. et al. | 2000
- 829
-
ORIGINAL ARTICLES - The ups and downs of protein topology; rapid comparison of protein structureMartin, A.C.R. et al. | 2000
- 829
-
The ups and downs of protein topology; rapid comparison of protein structureMartin, A. C. R. et al. | 2000
- 839
-
Evolutionary trace analysis of TGB-beta and related growth factors: implications for site-directed mutagenesisInnis, C. A. / Shi, J. / Blundell, T. L. et al. | 2000
- 839
-
ORIGINAL ARTICLES - Evolutionary trace analysis of TGB-b and related growth factors: Implications for site-directed mutagenesisInnis, C.A. et al. | 2000
- 849
-
PoPMuSiC, an algorithm for predicting protein mutant stability changes. Application to prion proteinsGilis, D. / Rooman, M. et al. | 2000
- 849
-
ORIGINAL ARTICLES - PoPMuSiC, an algorithm for predicting protein mutant stability changes. Application to prion proteinsGilis, D. et al. | 2000
- 857
-
ORIGINAL ARTICLES - Characterization of the b-lactam binding site of penicillin acylase of Escherichia coli by structural and site-directed mutagenesis studiesAlkema, W.B.L. et al. | 2000
- 857
-
Characterization of the beta-lactam binding site of penicillin acylase of Escherichia coli by structural and site-directed mutagenesis studiesAlkema, W. B. L. / Hensgens, C. M. H. / Kroezinga, E. H. / de Vries, E. / Floris, R. / van der Laan, J.-M. / Dijkstra, B. W. / Janssen, D. B. et al. | 2000
- 865
-
ORIGINAL ARTICLES - The functional implications of the dimerization of the catalytic subunits of the mammalian brain platelet-activating factor acetylhydrolase (Ib)McMullen, T.W.P. et al. | 2000
- 865
-
The functional implications of the dimerization of the catalytic subunits of the mammalian brain platelet-activating factor acetylhydrolase (Ib)McMullen, T. W. P. / Li, J. / Sheffield, P. J. / Aoki, J. / Martin, T. W. / Arai, H. / Inoue, K. / Derewenda, Z. S. et al. | 2000
- 873
-
Module shuffling of a family F/10 xylanase: replacement of modules M4 and M5 of the FXYN of Streptomyces olivaceoviridis E-86 with those of the Cex of Cellulomonas fimiKaneko, S. / Iwamatsu, S. / Kuno, A. / Fujimoto, Z. / Sato, Y. / Yura, K. / Go, M. / Mizuno, H. / Taira, K. / Hasegawa, T. et al. | 2000
- 873
-
ORIGINAL ARTICLES - Module shuffling of a family F-10 xylanase: Replacement of modules M4 and M5 of the FXYN of Streptomyces olivaceoviridis E-86 with those of the Cex of Cellulomonas fimiKaneko, S. et al. | 2000
- 881
-
Efficient cleavage of RNA at high temperatures by a thermostable DNA-linked ribonuclease HHaruki, M. / Nogawa, T. / Hirano, N. / Chon, H. / Tsunaka, Y. / Morikawa, M. / Kanaya, S. et al. | 2000
- 881
-
ORIGINAL ARTICLES - Efficient cleavage of RNA at high temperatures by a thermostable DNA-linked ribonuclease HHaruki, M. et al. | 2000
- 887
-
ORIGINAL ARTICLES - Non-ionic detergent affects the conformation of a functionally active mutant of Bcl-XLTan, Y.-J. et al. | 2000
- 887
-
Non-ionic detergent affects the conformation of a functionally active mutant of Bcl-X~LTan, Y.-J. / Ting, A. E. et al. | 2000
- 893
-
Acknowledgements| 2000
- 895
-
Author Index| 2000
- 897
-
Subject Index| 2000