GVis: A Scalable Visualization Framework for Genomic Data (English)

in Eurographics / IEEE VGTC Symposium on Visualization ; 191-198
Eurographics / IEEE VGTC Symposium on Visualization
The Eurographics Association , Postfach 8043, 38621 Goslar, Germany; 2005

This paper describes a framework we have developed for the visual analysis of large-scale phylogeny hierarchies populated with the genomic data of various organisms. This framework allows the user to quickly browse the phylogeny hierarchy of organisms from the highest level down to the level of an individual genome for the desired organism of interest. Based on this framework, the user can initiate gene-finding and gene-matching analyses and view the resulting annotated coding potential graphs in the same multi-scale visualization framework, permitting correlative analysis and further investigation. This paper introduces our framework and describes the data structures and algorithms that support it.

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Table of contents conference proceedings

The table of contents of the conference proceedings is generated automatically, so it can be incomplete, although all articles are available in the TIB.

9
Dynamically Modelling Interaction
May, Jon | 2005
13
Real-Time Advection and Volumetric Illumination for the Visualization of 3D Unsteady Flow
Weiskopf, Daniel / Schafhitzel, Tobias / Ertl, Thomas | 2005
21
Dense Geometric Flow Visualization
Park, Sung W. / Budge, Brian / Linsen, Lars / Hamann, Bernd / Joy, Kenneth I. | 2005
29
Vector Field Analysis and Visualization through Variational Clustering
McKenzie, Alexander / Lombeyda, Santiago V. / Desbrun, Mathieu | 2005
37
Scalable, Robust Visualization of Very Large Trees
Beermann, Dale / Munzner, Tamara / Humphreys, Greg | 2005
45
The i-Disc - A Tool To Visualize and Explore Topic Maps
Hofmann, Tobias / Wendler, Hendrik / Froehlich, Bernd | 2005
53
ArcTrees: Visualizing Relations in Hierarchical Data
Neumann, Petra / Schlechtweg, Dr. Stefan / Carpendale, Sheelagh | 2005
61
Tiled Parallel Coordinates for the Visualization of Time-Varying Multichannel EEG Data
Caat, Michael ten / Maurits, N. M. / Roerdink, J. B. T. M. | 2005
69
Illustrative Context-Preserving Volume Rendering
Bruckner, Stefan / Grimm, Sören / Kanitsar, Armin / Gröller, M. Eduard | 2005
77
High-Quality Rendering of Compressed Volume Data Formats
Fout, Nathaniel / Akiba, Hiroshi / Ma, Kwan-Liu / Lefohn, Aaron E. / Kniss, Joe | 2005
85
High-Quality Volume Rendering with Resampling in the Frequency Domain
Artner, Martin / Möller, Torsten / Viola, Ivan / Gröller, Meister E. | 2005
93
Visualization for Validation and Improvement of Three-dimensional Segmentation Algorithms
Weber, Gunther H. / Hendriks, Cris L. Luengo / Keränen, Soile V. E. / Dillard, Scott E. / Ju, Derek Y. / Sudar, Damir / Hamann, Bernd | 2005
101
VIS-a-VE: Visual Augmentation for Virtual Environments in Surgical Training
Chung, Adrian / Deligianni, Fani / Shah, Pallav / Wells, Athol / Yang, Guang-Zhong | 2005
109
VisBiz: A Business Process Visualization Case Study
Hao, Ming / Keim, Daniel A. / Dayal, Umeshwar / Schneidewind, Joern | 2005
117
Transfer Functions for Imaging Spectroscopy Data using Principal Component Analysis
Broersen, Alexander / Liere, Robert van | 2005
125
A Simple and Novel Seed-Set Finding Approach for Iso-Surface Extraction
Hung, Chiang-Han / Yang, Chuan-kai | 2005
133
Interactive rendering of massive terrains on PC clusters
Gouranton, V. / Madougou, Souley / Melin, Emmanuel / Nortet, Cyril | 2005
143
Localized Flow Analysis of 2D and 3D Vector Fields
Wiebel, Alexander / Garth, Christoph / Scheuermann, Gerik | 2005
151
Galilean Invariant Extraction and Iconic Representation of Vortex Core Lines
Sahner, Jan / Weinkauf, Tino / Hege, Hans-Christian | 2005
161
Analysis and Visualization of 3-C PIV Images from HART II using Image Processing Methods
Ebling, Julia / Scheuermann, Gerik / Wall, Berend G. van der | 2005
169
Pointillist and Glyph-based Visualization of Nanoparticles in Formation
Saunders, P. Coleman / Interrante, Victoria / Garrick, Sean C. | 2005
177
Hardware-Accelerated Glyphs for Mono- and Dipoles in Molecular Dynamics Visualization
Reina, Guido / Ertl, Thomas | 2005
183
Visualization of Computer-Modeled Forests for Forest Management
Mohammadi-Aragh, Mahnas Jean / Fujisaki, Ikuko / Irby, Derek / Evans, David / Moorhead, Robert / Roberts, Scott | 2005
191
GVis: A Scalable Visualization Framework for Genomic Data
Hong, Jin / Jeong, Dong Hyun / Shaw, Chris D / Ribarsky, William / Borodovsky, Mark / Song, Chang | 2005
199
Non-manifold Mesh Extraction from Time-varying Segmented Volumes used for Modeling a Human Heart
Bertram, Martin / Reis, Gerd / Lengen, Rolf H. van / Köhn, Sascha / Hagen, Hans | 2005
207
Isosurface Extraction Using Fixed-Sized Buckets
Waters, Kenneth W. / Co, Christopher S. / Joy, Kenneth I. | 2005
215
Spline-Based Gradient Filters For High-Quality Refraction Computations in Discrete Datasets
Li, Shengying / Mueller, Klaus | 2005
223
Version-Centric Visualization of Code Evolution
Voinea, S. Lucian / Telea, Alexandru / Chaudron, Michel | 2005
231
MoireTrees: Visualization and Interaction for Multi-Hierarchical Data
Mohammadi-Aragh, Mahnas Jean / Jankun-Kelly, T. J. | 2005
239
Visualisation and Analysis of Large and Complex Scale-free Networks
Ahmed, Adel / Dywer, Tim / Hong, Seok-Hee / Murray, Colin / Song, Le / Wu, Ying Xin | 2005
247
Mail Explorer - Spatial and Temporal Exploration of Electronic Mail
Keim, Daniel A. / Mansmann, Florian / Panse, Christian / Schneidewind, Jörn / Sips, Mike | 2005
255
Discovering High-level Parameters for Visualization Design
Bhagavatula, Srinivas / Rheingans, Penny / Jardins, Marie des | 2005
263
Extending and Simplifying Transfer Function Design in Medical Volume Rendering Using Local Histograms
Lundström, Claes / Ljung, Patric / Ynnerman, Anders | 2005
271
Spatialized Transfer Functions
Roettger, Stefan / Bauer, Michael / Stamminger, Marc | 2005
279
Interactive Methods for Exploring Particle Simulation Data
Co, Christopher S. / Friedman, Alex / Grote, David P. / Vay, Jean-Luc / Bethel, E. Wes / Joy, Kenneth I. | 2005
287
BioBrowser: A Framework for Fast Protein Visualization
Halm, Andreas / Offen, Lars / Fellner, Dieter | 2005
295
Interactive Visualization for Neck-Dissection Planning
Krüger, Arno / Tietjen, Christian / Hintze, Jana / Preim, Bernhard / Hertel, Ilka / Strauß, Gero | 2005
303
Combining Silhouettes, Surface, and Volume Rendering for Surgery Education and Planning
Tietjen, Christian / Isenberg, Tobias / Preim, Bernhard | 2005

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