Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization (English)

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Three-dimensional cell visualization is an important topic in today's cytology-affiliated community. Cell illustrations and animations are used for scientific as well as for educational purposes. Unfortunately, there exist only few tools to support the cell modeling process on a molecular level. A major problem is the immense intracellular size variation between relatively large mesoscopic cell components and small molecular membrane patches. This makes both modeling and visualization of whole cells a challenging task. In this paper we propose Membrane Mapping as an interactive tool for combining the mesoscopic and molecular level. Based on instantly computed local parameterizations we map patches of molecular membrane structures onto user-selected regions of cell components. By designing an efficient and GPU-friendly mapping technique, our approach allows to visualize and map pre-computed molecular dynamics simulations of membrane patches to mesoscopic structures in real-time. This enables the visualization of whole cells on a mesoscopic level with an interactive magnifier tool for inspecting their molecular structure and dynamic behavior.

Table of contents conference proceedings

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Extracting and Visualizing Uncertainties in Segmentations from 3D Medical Data
Faltin, Peter / Chaisaowong, Kraisorn / Kraus, Thomas / Merhof, Dorit | 2014
Real-Time Dense Nucleus Selection from Confocal Data
Wan, Yong / Otsuna, Hideo / Kwan, K. M. / Hansen, Charles | 2014
Visual and Quantitative Analysis of Higher Order Arborization Overlaps for Neural Circuit Research
Swoboda, Nicolas / Moosburner, Judith / Bruckner, Stefan / Yu, Jai Y. / Dickson, Barry J. / Bühler, Katja | 2014
Personalized X-ray Reconstruction of the Proximal Femur via a New Control Point-based 2D-3D Registration and Residual Complexity Minimization
Yu, Weimin / Zheng, Guoyan | 2014
Uncertainty-aware Ensemble of Classifiers for Segmenting Brain MRI Data
Al-Taie, Ahmed / Hahn, Horst K. / Linsen, Lars | 2014
Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations
Kozlíková, Barbora / Jurcík, Adam / Byka, Jan / Strnad, Ondrej / Sochor, Jirí | 2014
Interactive Visualization of Muscle Activity During Limb Movements: Towards Enhanced Anatomy Learning
Bauer, Armelle / Paclet, Florent / Cahouet, Violaine / Dicko, Ali-Hamadi / Palombi, Olivier / Faure, François / Troccaz, Jocelyne | 2014
Towards Clinical Deployment of Automated Anatomical Regions-Of-Interest
Lindholm, Stefan / Forsberg, Daniel / Ynnerman, Anders / Knutsson, Hans / Andersson, Mats / Lundström, Claes | 2014
The iCoCooN: Integration of Cobweb Charts with Parallel Coordinates for Visual Analysis of DCE-MRI Modeling Variations
Raidou, Renata G. / Breeuwer, Marcel / Vilanova, Anna / Heide, U. A. van der / Houdt, P. J. van | 2014
Robust Cardiac Function Assessment in 4D PC-MRI Data
Köhler, Benjamin / Preim, Uta / Gutberlet, Matthias / Fischbach, Katharina / Preim, Bernhard | 2014
A Survey on Visualizing Magnetic Resonance Spectroscopy Data
Nunes, Miguel / Laruelo, Andrea / Ken, SoleaKhena / Laprie, Anne / Bühler, Katja | 2014
Interactive Labeling of Toponome Data
Oeltze-Jafra, Steffen / Pieper, Franz / Hillert, Reyk / Preim, Bernhard / Schubert, Walter | 2014
Imaging the Vascular Network of the Human Spleen from Immunostained Serial Sections
Ulrich, Christine / Lobachev, Oleg / Steiniger, Birte / Guthe, Michael | 2014
Survey of Labeling Techniques in Medical Visualizations
Oeltze-Jafra, Steffen / Preim, Bernhard | 2014
Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization
Waltemate, Thomas / Sommer, Björn / Botsch, Mario | 2014
Evaluation of Transfer Function Methods in Direct Volume Rendering of the Blood Vessel Lumen
Läthén, Gunnar / Lindholm, Stefan / Lenz, Reiner / Borga, Magnus | 2014
Visibility-Driven Processing of Streaming Volume Data
Solteszova, Veronika / Birkeland, Asmund / Viola, Ivan / Bruckner, Stefan | 2014
A Comparative User Study of a 2D and an Autostereoscopic 3D Display for a Tympanoplastic Surgery
Baer, Alexandra / Huebler, Antje / Saalfeld, Patrick / Cunningham, Douglas / Preim, Bernhard | 2014
Inlier Detection in Thermal Sensitive Images
Zadicario, Eyal / Carmi, N. / Ju, Tao / Cohen-Or, Daniel | 2014
RegistrationShop: An Interactive 3D Medical Volume Registration System
Smit, Noeska N. / Haneveld, Berend Klein / Staring, Marius / Eisemann, Elmar / Botha, Charl P. / Vilanova, Anna | 2014
Misalignment Correction in Open Cone-Beam CT
Wieckowski, Adam / Stopp, Fabian / Käseberg, Marc / Keeve, Erwin | 2014
Deriving Anatomical Context from 4D Ultrasound
Müller, Markus / Helljesen, Linn E. S. / Prevost, Raphael / Viola, Ivan / Nylund, Kim / Gilja, Odd Helge / Navab, Nassir / Wein, Wolfgang | 2014