Hybrid Visualization of Protein-Lipid and Protein-Protein Interaction (Unknown language)

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In the Molecular Dynamics (MD) visualization literature, different approaches are utilized to study protein-lipid interactions (PLI) and protein-protein interaction (PPI) in decoupled contexts. However, the two types of interaction occur in the same space-time domain. It is beneficial to study the PLI and PPI in a unified context. Nevertheless, the simulation's size, length, and complexity increase the challenge of understanding the dynamic behavior. We propose a novel framework consisting of four linked views, a time-dependent 3D view, a novel hybrid view, a clustering timeline, and a details-on-demand window. We introduce a selection of visual designs to convey the behavior of PLI and PPI through a unified coordinate system. Abstraction is used to present proteins in hybrid 2D space, a projected tiled space is used to present both PLI and PPI at the particle level in a heat-map style visual design while glyphs are used to represent PPI at the molecular level. We couple visually separable visual designs in a unified coordinate space. The result lets the user study both PLI and PPI separately or together in a unified visual analysis framework. We also exemplify its use with case studies focusing on protein clustering and we report domain expert feedback.

Table of contents conference proceedings

The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.

1
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11
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17
Colonic Content Assessment from MRI Imaging Using a Semi-automatic Approach
Ceballos, Victor / Monclús, Eva / Vázquez, Pere-Pau / Bendezú, Álvaro / Mego, Marianela / Merino, Xavier / Azpiroz, Fernando / Navazo, Isabel | 2019
27
A Web-based Application for the Visual Exploration of Colon Morphology Data
Males, Jan / Monclús, Eva / Díaz, Jose / Vázquez, Pere-Pau | 2019
33
Interactive Formation of Statistical Hypotheses in Diffusion Tensor Imaging
Abbasloo, Amin / Wiens, Vitalis / Schmidt-Wilcke, Tobias / Sundgren, Pia / Klein, Reinhard / Schultz, Thomas | 2019
45
Semantic Segmentation of Brain Tumors in MRI Data Without any Labels
Weninger, Leon / Krauhausen, Imke / Merhof, Dorit | 2019
51
Feasibility Study For Automatic Bird Tracking and Visualization from Time-Dependent Marine Radar Imagery
Ganglberger, Florian / Bühler, Katja | 2019
57
A Visual Environment for Hypothesis Formation and Reasoning in Studies with fMRI and Multivariate Clinical Data
Jönsson, Daniel / Bergström, Albin / Forsell, Camilla / Simon, Rozalyn / Engström, Maria / Ynnerman, Anders / Hotz, Ingrid | 2019
69
Pelvis Runner: Visualizing Pelvic Organ Variability in a Cohort of Radiotherapy Patients
Grossmann, Nicolas / Casares-Magaz, Oscar / Muren, Ludvig Paul / Moiseenko, Vitali / Einck, John P. / Gröller, Eduard / Raidou, Renata Georgia | 2019
79
preha: Establishing Precision Rehabilitation with Visual Analytics
Bernold, Georg / Matkovic, Kresimir / Gröller, Eduard / Raidou, Renata Georgia | 2019
91
A Visual Analytics Approach for Patient Stratification and Biomarker Discovery
Alemzadeh, Shiva / Kromp, Florian / Preim, Bernhard / Taschner-Mandl, Sabine / Bühler, Katja | 2019
97
MedUse: A Visual Analysis Tool for Medication Use Data in the ABCD Study
Bartsch, Hauke / Garrison, Laura / Bruckner, Stefan / Wang, Ariel / Tapert, Susan F. / Grüner, Renate | 2019
103
Interactive Exploded Views for Molecular Structures
Sbardellati, Maximilian / Miao, Haichao / Wu, Hsiang-Yun / Gröller, Eduard / Barisic, Ivan / Viola, Ivan | 2019
113
DockVis: Visual Analysis of Molecular Docking Data
Furmanová, Katarína / Kozlíková, Barbora / Vonásek, Vojtěch / Byška, Jan | 2019
123
Layer-Aware iOCT Volume Rendering for Retinal Surgery
Weiss, Jakob / Eck, Ulrich / Nasseri, Muhamad Ali / Maier, Mathias / Eslami, Abouzar / Navab, Nassir | 2019
129
Visual Analytics in Digital Pathology: Challenges and Opportunities
Corvò, Alberto / Westenberg, Michel A. / Wimberger-Friedl, Reinhold / Fromme, Stephan / Peeters, Michel M. R. / Driel, Marc A. van / Wijk, Jarke J. van | 2019
145
Medical Animations: A Survey and a Research Agenda
Preim, Bernhard / Meuschke, Monique | 2019
165
Using Position-Based Dynamics for Simulating the Mitral Valve in a Decision Support System
Walczak, Lars / Georgii, Joachim / Tautz, Lennart / Neugebauer, Mathias / Wamala, Isaac / Sündermann, Simon / Falk, Volkmar / Hennemuth, Anja | 2019
177
InkVis: A High-Particle-Count Approach for Visualization of Phase-Contrast Magnetic Resonance Imaging Data
Hoon, Niels H. L. C. de / Lawonn, Kai / Jalba, Andrei C. / Eisemann, Elmar / Vilanova, Anna | 2019
189
Robustness Evaluation of CFD Simulations to Mesh Deformation
Scheid-Rehder, Alexander / Lawonn, Kai / Meuschke, Monique | 2019
201
The Vitruvian Baby: Interactive Reformation of Fetal Ultrasound Data to a T-Position
Mörth, Eric / Raidou, Renata Georgia / Viola, Ivan / Smit, Noeska N. | 2019
207
HIFUpm: a Visual Environment to Plan and Monitor High Intensity Focused Ultrasound Treatments
Modena, Daniela / Bassano, Davide / Elevelt, Aaldert / Baragona, Marco / Hilbers, Peter A. J. / Westenberg, Michel A. | 2019
213
Hybrid Visualization of Protein-Lipid and Protein-Protein Interaction
Alharbi, Naif / Krone, Michael / Chavent, Matthieu / Laramee, Robert S. | 2019
225
Molecular Sombreros: Abstract Visualization of Binding Sites within Proteins
Schatz, Karsten / Krone, Michael / Bauer, Tabea L. / Ferrario, Valerio / Pleiss, Jürgen / Ertl, Thomas | 2019
239
Interactive CPU-based Ray Tracing of Solvent Excluded Surfaces
Rau, Tobias / Zahn, Sebastian / Krone, Michael / Reina, Guido / Ertl, Thomas | 2019
253
Evolutionary Pathlines for Blood Flow Exploration in Cerebral Aneurysms
Behrendt, Benjamin / Engelke, Wito / Berg, Philipp / Beuing, Oliver / Preim, Bernhard / Hotz, Ingrid / Saalfeld, Sylvia | 2019
265
Distance Field Visualization and 2D Abstraction of Vessel Tree Structures with on-the-fly Parameterization
Lichtenberg, Nils / Krayer, Bastian / Hansen, Christian / Müller, Stefan / Lawonn, Kai | 2019
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