Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus Approach (English)
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- https://orcid.org/0000-0002-8799-7776
- New search for: Deshpande, Nandan P.
- New search for: Wilkins, Marc R.
- Further information on Wilkins, Marc R.:
- https://orcid.org/0000-0002-5700-5684
- New search for: Parameswaran, Sri
- New search for: Bayat, Arash
- Further information on Bayat, Arash:
- https://orcid.org/0000-0002-8799-7776
- New search for: Deshpande, Nandan P.
- New search for: Wilkins, Marc R.
- Further information on Wilkins, Marc R.:
- https://orcid.org/0000-0002-5700-5684
- New search for: Parameswaran, Sri
In:
IEEE/ACM Transactions on Computational Biology and Bioinformatics
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17
, 1
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334-338
;
2020
- Article (Journal) / Electronic Resource
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Title:Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus Approach
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Contributors:Bayat, Arash ( author ) / Deshpande, Nandan P. ( author ) / Wilkins, Marc R. ( author ) / Parameswaran, Sri ( author )
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Published in:IEEE/ACM Transactions on Computational Biology and Bioinformatics ; 17, 1 ; 334-338
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Publisher:
- New search for: IEEE
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Publication date:2020-01-01
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Size:970770 byte
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 17, Issue 1
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1
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2019 Index IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 16| 2020
- 1
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Algorithms for Computational Biology: Fifth EditionMartin-Vide, Carlos / Vega-Rodriguez, Miguel A. et al. | 2020
- 2
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Heuristics for the Reversal and Transposition Distance ProblemBrito, Klairton Lima / Oliveira, Andre Rodrigues / Dias, Ulisses / Dias, Zanoni et al. | 2020
- 14
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Polynomial-Time Algorithms for Phylogenetic Inference Problems Involving Duplication and Reticulationvan Iersel, Leo / Janssen, Remie / Jones, Mark / Murakami, Yukihiro / Zeh, Norbert et al. | 2020
- 27
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A Promising Method for Calculating True Steady-State Metabolite Concentrations in Large-Scale Metabolic Reaction Network ModelsMiyawaki-Kuwakado, Atsuko / Komori, Soichiro / Shiraishi, Fumihide et al. | 2020
- 37
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A Supervised Ensemble Approach for Sensitive microRNA Target PredictionMaji, Ranjan Kumar / Khatua, Sunirmal / Ghosh, Zhumur et al. | 2020
- 47
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An Application of the Bayesian Periodicity Test to Identify Diurnal Rhythm Genes in the BrainKocak, Mehmet / Mozhui, Khyobeni et al. | 2020
- 56
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Assessing the Effectiveness of Causality Inference Methods for Gene Regulatory NetworksAhmed, Syed Sazzad / Roy, Swarup / Kalita, Jugal et al. | 2020
- 71
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Class Balanced Multifactor Dimensionality Reduction to Detect Gene–Gene InteractionsYang, Cheng-Hong / Lin, Yu-Da / Chuang, Li-Yeh et al. | 2020
- 82
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Deep Learning for Plant Species Classification Using Leaf Vein MorphometricTan, Jing Wei / Chang, Siow-Wee / Abdul-Kareem, Sameem / Yap, Hwa Jen / Yong, Kien-Thai et al. | 2020
- 91
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Deep Manifold Preserving Autoencoder for Classifying Breast Cancer Histopathological ImagesFeng, Yangqin / Zhang, Lei / Mo, Juan et al. | 2020
- 102
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Disruption of Protein Complexes from Weighted Complex NetworksHabibi, Mahnaz / Khosravi, Pegah et al. | 2020
- 110
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Drug Selection via Joint Push and Learning to RankHe, Yicheng / Liu, Junfeng / Ning, Xia et al. | 2020
- 124
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EL_LSTM: Prediction of DNA-Binding Residue from Protein Sequence by Combining Long Short-Term Memory and Ensemble LearningZhou, Jiyun / Lu, Qin / Xu, Ruifeng / Gui, Lin / Wang, Hongpeng et al. | 2020
- 136
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Fast de Bruijn Graph Compaction in Distributed Memory EnvironmentsPan, Tony / Nihalani, Rahul / Aluru, Srinivas et al. | 2020
- 149
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GaMRed—Adaptive Filtering of High-Throughput Biological DataMarczyk, Michal / Jaksik, Roman / Polanski, Andrzej / Polanska, Joanna et al. | 2020
- 158
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Generation of Level-$k$k LGT NetworksPons, Joan Carles / Scornavacca, Celine / Cardona, Gabriel et al. | 2020
- 165
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Identifying “Many-to-Many” Relationships between Gene-Expression Data and Drug-Response Data via Sparse Binary MatchingCai, Jiulun / Cai, Hongmin / Chen, Jiazhou / Yang, Xi et al. | 2020
- 177
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Improving de novo Assembly Based on Read ClassificationLiao, Xingyu / Li, Min / Luo, Junwei / Zou, You / Wu, Fang-Xiang / Pan, Yi / Luo, Feng / Wang, Jianxin et al. | 2020
- 189
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LPGNMF: Predicting Long Non-Coding RNA and Protein Interaction Using Graph Regularized Nonnegative Matrix FactorizationZhang, Tianyi / Wang, Minghui / Xi, Jianing / Li, Ao et al. | 2020
- 198
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Microarray-Based Quality Assessment as a Supporting Criterion for de novo Transcriptome Assembly SelectionCarvajal-Lopez, Patricia / Von Borstel, Fernando D. / Torres, Amada / Rustici, Gabriella / Gutierrez, Joaquin / Romero-Vivas, Eduardo et al. | 2020
- 207
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Multi-Factored Gene-Gene Proximity Measures Exploiting Biological Knowledge Extracted from Gene Ontology: Application in Gene ClusteringAcharya, Sudipta / Saha, Sriparna / Pradhan, Prasanna et al. | 2020
- 220
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MultiMotifMaker: A Multi-Thread Tool for Identifying DNA Methylation Motifs from Pacbio ReadsLi, Tao / Zhang, Xiankai / Luo, Feng / Wu, Fang-Xiang / Wang, Jianxin et al. | 2020
- 226
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Nature-Inspired Multiobjective Epistasis Elucidation from Genome-Wide Association StudiesLi, Xiangtao / Zhang, Shixiong / Wong, Ka-Chun et al. | 2020
- 238
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NMFGO: Gene Function Prediction via Nonnegative Matrix Factorization with Gene OntologyYu, Guoxian / Wang, Keyao / Fu, Guangyuan / Guo, Maozu / Wang, Jun et al. | 2020
- 250
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Optimal Bayesian Filtering for Biomarker Discovery: Performance and RobustnessForoughi pour, Ali / Dalton, Lori A. et al. | 2020
- 264
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PolyCluster: Minimum Fragment Disagreement Clustering for Polyploid PhasingMazrouee, Sepideh / Wang, Wei et al. | 2020
- 278
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Rapid Reconstruction of Time-Varying Gene Regulatory NetworksPyne, Saptarshi / Kumar, Alok Ranjan / Anand, Ashish et al. | 2020
- 292
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Stepwise Tikhonov Regularisation: Application to the Prediction of HIV-1 Drug ResistanceDelgado, Ramon A. / Chen, Zhiyong / Middleton, Richard H. et al. | 2020
- 302
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Using Emulation to Engineer and Understand Simulations of Biological SystemsAlden, Kieran / Cosgrove, Jason / Coles, Mark / Timmis, Jon et al. | 2020
- 316
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A Note on GRegNetSim: A Tool for the Discrete Simulation and Analysis of Genetic Regulatory NetworksGanor, Dor / Pinter, Ron Y. / Zehavi, Meirav et al. | 2020
- 321
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BiModule: Biclique Modularity Strategy for Identifying Transcription Factor and microRNA Co-Regulatory ModulesPan, Chu / Luo, Jiawei / Zhang, Jiao / Li, Xin et al. | 2020
- 327
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Deleterious Non-Synonymous Single Nucleotide Polymorphism Predictions on Human Transcription FactorsWong, Ka-Chun / Yan, Shankai / Lin, Qiuzhen / Li, Xiangtao / Peng, Chengbin et al. | 2020
- 334
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Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus ApproachBayat, Arash / Deshpande, Nandan P. / Wilkins, Marc R. / Parameswaran, Sri et al. | 2020
- 339
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Gene Regulatory Relationship Mining Using Improved Three-Phase Dependency Analysis ApproachLiu, Jianxiao / Yan, Jianbing / Tian, Zonglin / Xiao, Yingjie / Liu, Haijun / Hao, Songlin / Zhang, Xiaolong / Wang, Chaoyang / Sun, Jianchao / Yu, Huan et al. | 2020
- 347
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Heterogeneous Domain Adaptation for IHC Classification of Breast Cancer SubtypesIsmailoglu, Firat / Cavill, Rachel / Smirnov, Evgueni / Zhou, Shuang / Collins, Pieter / Peeters, Ralf et al. | 2020
- 354
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Softepigen: Primers Design Web-Based Tool for MS-HRM TechniquePinzon-Reyes, Efrain / Alvarez, William Armando / Rondon-Villarreal, Paola / Hernandez, Hernan Guillermo et al. | 2020
- 358
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Using Unlabeled Data to Discover Bivariate Causality with Deep Restricted Boltzmann MachinesSokolovska, Nataliya / Permiakova, Olga / Forslund, Sofia K. / Zucker, Jean-Daniel et al. | 2020
- 365
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Correction to “Identification of Novel Scaffolds with Dual Role as Antiepileptic and Anti-Breast Cancer”Rampogu, Shailima / Park, Seok Ju / Lee, Keun Woo / Baek, Ayoung / Bavi, Rohit / Son, Minky / Cao, Guang Ping / Kumar, Raj / Park, Chanin / Zeb, Amir et al. | 2020