
Corona virus: Our reading rooms are open. Please try to prevent long stays in the library.
► More information about opening hours and visiting the library you find in our FAQ
Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus Approach (English)
- New search for: Bayat, Arash
- Further information on Bayat, Arash:
-
https://orcid.org/0000-0002-8799-7776
- New search for: Deshpande, Nandan P.
- New search for: Wilkins, Marc R.
- Further information on Wilkins, Marc R.:
-
https://orcid.org/0000-0002-5700-5684
- New search for: Parameswaran, Sri
- Article (Journal) / Electronic Resource
-
Title:Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus Approach
-
Author / Creator:
-
Published in:IEEE/ACM Transactions on Computational Biology and Bioinformatics ; 17 ; 1 ; 334-338
-
Publisher:IEEE
-
Year of publication:2020
-
Size:970770 byte
-
ISSN:
-
DOI:
-
Type of media:Article (Journal)
-
Type of material:Electronic Resource
-
Language:English
-
Source:
-
Export:
-
ORKG:
Table of contents – Volume 17, Issue 1
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1
-
State of the JournalGusfield, Dan | 2007
- 1
-
A Memory Efficient Method for Structure-Based RNA Multiple AlignmentDeBlasio, D. / Bruand, J. / Shaojie Zhang, | 2012
- 1
-
Editorial from the Editor-in-ChiefXu, Ying | 2014
- 1
-
Fast Computation of Minimal Cut Sets in Metabolic Networks with a Berge Algorithm that Utilizes Binary Bit Pattern TreesJungreuthmayer, Christian / Beurton-Aimar, Marie / Zanghellini, Jurgen | 2013
- 1
-
Guest Editorial for the 16th Asia Pacific Bioinformatics ConferenceYamanishi, Yoshihiro / Sakakibara, Yasubumi / Chen, Yi-Ping Phoebe | 2019
- 1
-
Computing the Joint Distribution of Tree Shape and Tree Distance for Gene Tree Inference and Recombination DetectionChung, Yujin / Perna, Nicole T. / Ane, Cecile | 2013
- 1
-
Naïve Bayesian Classifiers with Multinomial Models for rRNA Taxonomic AssignmentLiu, Kuan-Liang / Wong, Tzu-Tsung | 2013
- 1
-
EIC EditorialSagot, Marie-France | 2011
- 1
-
2019 Index IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 16| 2020
- 1
-
Welcome MessageWilliams, M.R. | 2004
- 1
-
Guest Editorial for Special Section on the 10th International Conference on Intelligent Computing (ICIC)Huang, De-Shuang / Bevilacqua, Vitoantonio / Gromiha, M. Michael | 2016
- 1
-
An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms ApproachBates Congdon, C. / Aman, J.C. / Nava, G.M. / Gaskins, H.R. / Mattingly, C.J. | 2008
- 1
-
Editor's Note| 2010
- 1
-
A Graphical Model of Smoking-Induced Global Instability in Lung CancerYanbo Wang, / Weikang Qian, / Bo Yuan, | 2018
- 1
-
Statistical Detection of Boolean Regulatory RelationshipsChen, Ting / Braga-Neto, Ulisses M. | 2013
- 1
-
Algorithms for Computational Biology: Fifth EditionMartin-Vide, Carlos / Vega-Rodriguez, Miguel A. | 2020
- 1
-
Guest Editorial: WABI Special Section Part IIJunhyong Kim, / Jonassen, I. | 2005
- 1
-
Editorial from the New Editor-in-ChiefXu, Ying | 2013
- 1
-
2018 Index IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 15| 2019
- 1
-
Combination of geological data and radon survey results for radon mappingZhukovsky, M. / Yarmoshenko, I. / Kiselev, S. | 2012
- 1
-
Final, Five-Year End, EditorialGusfield, Dan | 2009
- 1
-
2017 Index IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 14| 2018
- 1
-
Editorial: Special Section on Bio-Inspired Swarm Computing and EngineeringTan, Ying / Shi, Yuhui | 2017
- 2
-
Jointly analyzing gene expression and copy number data in breast cancer using data reduction modelsBerger, J.A. / Hautaniemi, S. / Mitra, S.K. / Astola, J. | 2006
- 2
-
A Fast Algorithm for Computing Geodesic Distances in Tree SpaceOwen, Megan / Provan, J Scott | 2011
- 2
-
Automatic Detection of Large Dense-Core Vesicles in Secretory Cells and Statistical Analysis of Their Intracellular DistributionDiaz, E. / Ayala, G. / Diaz, M.E. / Liang-Wei Gong, / Toomre, D. | 2010
- 2
-
Associate Editor Appreciation and WelcomeGusfield, Dan | 2007
- 2
-
Heuristics for the Reversal and Transposition Distance ProblemBrito, Klairton Lima / Oliveira, Andre Rodrigues / Dias, Ulisses / Dias, Zanoni | 2020
- 2
-
Guest Editors’ Introduction: Selected Papers from ACM-BCB 2013Aluru, Srinivas / Slonim, Donna K. | 2015
- 2
-
RNA Secondary Structure Prediction Using Soft ComputingRay, Shubhra Sankar / Pal, Sankar K. | 2013
- 2
-
SURVEY PAPERS - RNA Secondary Structure Prediction Using Soft ComputingRay, S S / Pal, S K | 2013
- 2
-
Introduction to the IEEE/ACM Transactions on Computational Biology and BioinformaticsGusfield, D. | 2004
- 3
-
New EIC EditorialSagot, Marie-France | 2009
- 3
-
Guest Editor's Introduction to the Special Section on Computational Biology and Bioinformatics (WABI) -- Part 2Casadio, Rita | 2007
- 3
-
A new distance for high level RNA secondary structure comparisonAllali, J. / Sagot, M.-F. | 2005
- 3
-
Parallel Computation of the Burrows-Wheeler Transform of Short Reads Using Prefix ParallelismKimura, Kouichi / Koike, Asako | 2019
- 4
-
Quality assurance for measurements of the radioactivity in the area of the ``Horia Hulubei'' National Institute for Physics and Nuclear Engineering, IFIN-HHStochioiu, A. / Luca, A. / Sahagia, M. / Margineanu, R.M. / Tudor, I. | 2012
- 4
-
Special Section: PhylogeneticsHuson, Daniel H. / Moulton, Vincent / Steel, Mike | 2009
- 4
-
MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic SearchDaniels, Noah M. / Gallant, Andrew / Ramsey, Norman / Cowen, Lenore J. | 2015
- 4
-
Symbiosis-Based Alternative Learning Multi-Swarm Particle Swarm OptimizationBen Niu, / Huali Huang, / Lijing Tan, / Qiqi Duan, | 2017
- 4
-
SPECIAL SECTION ON PHYLOGENETICS - Special Section: PhylogeneticsHuson, D.H. / Moulton, V. / Steel, M. | 2009
- 4
-
GeneNetFinder2: Improved Inference of Dynamic Gene Regulatory Relations with Multiple RegulatorsKyungsook Han, / Jeonghoon Lee, | 2016
- 4
-
Perfect Sorting by Reversals Is Not Always DifficultBerard, S. / Bergeron, A. / Chauve, C. / Paul, C. | 2007
- 4
-
Introduction of new Associate EditorsWilliams, M.R. | 2004
- 4
-
SPECIAL SECTION ON COMPUATIONAL BIOLOGY AND BIOINFORMATICS (WABI) -- PART 2 - Perfect Sorting by Reversals Is Not Always DifficultBérard, S. / Bergeron, A. / Chauve, C. / Paul, C. | 2007
- 5
-
SPECIAL SECTION ON THE INTERNATIONAL CONFERENCE ON GENOME INFORMATICS - Guest Editorial for the International Conference on Genome Informatics (GIW 2013)Eisenhaber, F / Sung, W-K / Wong, L | 2014
- 5
-
Guest Editorial for the International Conference on Genome Informatics (GIW 2013)Eisenhaber, Frank / Sung, Wing-Kin / Wong, Limsoon | 2014
- 7
-
Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree AccuracyLiu, K. / Nelesen, S. / Raghavan, S. / Linder, C.R. / Warnow, T. | 2009
- 7
-
Coupling Graphs, Efficient Algorithmsand B-Cell Epitope PredictionZhao, Liang / Hoi, Steven C.H. / Li, Zhenhua / Wong, Limsoon / Nguyen, Hung / Li, Jinyan | 2014
- 8
-
Iodine-129, Iodine-127 and Caesium-137 in the environment: soils from Germany and ChileDaraoui, A. / Michel, R. / Gorny, M. / Jakob, D. / Sachse, R. / Synal, H.-A. / Alfimov, V. | 2012
- 12
-
Hybrid Framework Using Multiple-Filters and an Embedded Approach for an Efficient Selection and Classification of Microarray DataBonilla-Huerta, Edmundo / Hernandez-Montiel, Alberto / Morales-Caporal, Roberto / Arjona-Lopez, Marco | 2016
- 12
-
An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and MutationsPirola, Y. / Bonizzoni, P. / Tao Jiang, | 2012
- 12
-
BioExtract Serve — An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular DataZhu, S / Wang, D / Yu, K / Li, T / Gong, Y | 2010
- 12
-
BioExtract Server—An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular DataLushbough, C. / Bergman, M.K. / Lawrence, C.J. / Jennewein, D. / Brendel, V. | 2010
- 13
-
Phylogenetic networks: modeling, reconstructibility, and accuracyMoret, B.M.E. / Nakhleh, L. / Warnow, T. / Linder, C.R. / Tholse, A. / Padolina, A. / Sun, J. / Timme, R. | 2004
- 14
-
A General Framework for Analyzing Data from Two Short Time-Series Microarray ExperimentsShah, Mohak / Corbeil, Jacques | 2011
- 14
-
Polynomial-Time Algorithms for Phylogenetic Inference Problems Involving Duplication and Reticulationvan Iersel, Leo / Janssen, Remie / Jones, Mark / Murakami, Yukihiro / Zeh, Norbert | 2020
- 14
-
Computing the Diameter of the Space of Maximum Parsimony Reconciliations in the Duplication-Transfer-Loss ModelHaack, Jordan / Zupke, Eli / Ramirez, Andrew / Wu, Yi-Chieh / Libeskind-Hadas, Ran | 2019
- 15
-
An Information Theoretic Exploratory Method for Learning Patterns of Conditional Gene Coexpression from Microarray DataBoscolo, R. / Liao, J.C. / Roychowdhury, V.P. | 2008
- 15
-
Topological rearrangements and local search method for tandem duplication treesBertrand, D. / Gascuel, O. | 2005
- 15
-
Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus TreeJansson, Jesper / Rajaby, Ramesh / Chuanqi Shen, / Wing-Kin Sung, | 2018
- 15
-
A New Magnetotactic Bacteria Optimization Algorithm Based on Moment MigrationHongwei Mo, / Lili Liu, / Jiao Zhao, | 2017
- 17
-
RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation InformationTorii, Manabu / Arighi, Cecilia N. / Li, Gang / Wang, Qinghua / Wu, Cathy H. / Vijay-Shanker, K. | 2015
- 17
-
Ortholog Clustering on a Multipartite GraphVashist, A. / Kulikowski, C.A. / Muchnik, I. | 2007
- 17
-
Quantifying Significance of MHC II ResiduesFan, Ying / Lu, Ruoshui / Wang, Lusheng / Andreatta, Massimo / Li, Shuai Cheng | 2014
- 17
-
Spatio-temporal analysis of constitutive exocytosis in epithelial cellsSebastian, R. / Diaz, M.-E. / Ayala, G. / Letinic, K. / Moncho-Bogani, J. / Toomre, D. | 2006
- 17
-
SPECIAL SECTION ON COMPUATIONAL BIOLOGY AND BIOINFORMATICS (WABI) -- PART 2 - Ortholog Clustering on a Multipartite GraphVashist, A. / Kulikowski, C.A. / Muchnik, I. | 2007
- 18
-
A Simple Fixed Parameter Tractable Algorithm for Computing the Hybridization Number of Two (Not Necessarily Binary) TreesPiovesan, Teresa / Kelk, Steven M. | 2013
- 22
-
Budgeted Phylogenetic Diversity on Circular Split SystemsMinh, B.Q. / Pardi, F. / Klaere, S. / von Haeseler, A. | 2009
- 22 pp
-
2011 Annual Index| 2012
- 23
-
Hardness of Covering Alignment: Phase Transition in Post-Sequence GenomicsRizzi, Romeo / Cairo, Massimo / Makinen, Veli / Tomescu, Alexandru I. / Valenzuela, Daniel | 2019
- 23
-
Vertical distribution and inventories of 239+240Pu and mercury in Sagua la Grande estuary, CubaAlonso-Hernandez, C.M. / Martin-Perez, J. / Gasco, C. / Diaz-Asencio, M. / Bolanos-Alvarez, Y. / Gomez-Batista, M. | 2012
- 24
-
Biclustering algorithms for biological data analysis: a surveyMadeira, S.C. / Oliveira, A.L. | 2004
- 25
-
Feature Selection for Gene Expression Using Model-Based EntropyShenghuo Zhu, / Dingding Wang, / Kai Yu, / Tao Li, / Yihong Gong, | 2010
- 25
-
RnaPredict—An Evolutionary Algorithm for RNA Secondary Structure PredictionWiese, K.C. / Deschenes, A.A. / Hendriks, A.G. | 2008
- 26
-
An Efficient Method for Exploring the Space of Gene Tree/Species Tree Reconciliations in a Probabilistic FrameworkDoyon, J.-P / Hamel, S. / Chauve, C. | 2012
- 26
-
DALIX: Optimal DALI Protein Structure AlignmentWohlers, Inken / Andonov, Rumen / Klau, Gunnar W. | 2013
- 26
-
Intelligent Consensus Modeling for ProlineCis-Trans Isomerization PredictionYoo, Paul D. / Muhaidat, Sami / Taha, Kamal / Bentahar, Jamal / Shami, Abdallah | 2014
- 27
-
Efficient Formulations for Exact Stochastic Simulation of Chemical SystemsMauch, Sean / Stalzer, Mark | 2011
- 27
-
Predicting Hub Genes Associated with Cervical Cancer through Gene Co-Expression NetworksSu-Ping Deng, / Lin Zhu, / De-Shuang Huang, | 2016
- 27
-
A Cooperative Framework for Fireworks AlgorithmShaoqiu Zheng, / Junzhi Li, / Janecek, Andreas / Ying Tan, | 2017
- 27
-
A Promising Method for Calculating True Steady-State Metabolite Concentrations in Large-Scale Metabolic Reaction Network ModelsMiyawaki-Kuwakado, Atsuko / Komori, Soichiro / Shiraishi, Fumihide | 2020
- 27
-
Application of Genetic Programming (GP) Formalism for Building Disease Predictive Models from Protein-Protein Interactions (PPI) DataVyas, Renu / Bapat, Sanket / Goel, Purva / Karthikeyan, Muthukumarasamy / Tambe, Sanjeev S. / Kulkarni, Bhaskar D. | 2018
- 28
-
EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM MapsLasker, K. / Dror, O. / Shatsky, M. / Nussinov, R. / Wolfson, H.J. | 2007
- 28
-
SPECIAL SECTION ON COMPUATIONAL BIOLOGY AND BIOINFORMATICS (WABI) -- PART 2 - EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM MapsLasker, K. / Dror, O. / Shatsky, M. / Nussinov, R. / Wolfson, H.J. | 2007
- 29
-
Optimizing multiple seeds for protein homology searchBrown, D.G. | 2005
- 29
-
Elevated CO2 increases Cs uptake and alters microbial communities and biomass in the rhizosphere of Phytolacca americana Linn (pokeweed) and Amaranthus cruentus L. (purple amaranth) grown on soils spiked with various levels of CsSong, N. / Zhang, X. / Wang, F. / Zhang, C. / Tang, S. | 2012
- 30
-
Hybridization in Nonbinary TreesLinz, S. / Semple, C. | 2009
- 30
-
Phenotype-Dependent Coexpression Gene Clusters: Application to Normal and Premature AgeingWang, Kun / Das, Avinash / Xiong, Zheng-Mei / Cao, Kan / Hannenhalli, Sridhar | 2015
- 31
-
Taming Asynchrony for Attractor Detection in Large Boolean NetworksMizera, Andrzej / Pang, Jun / Qu, Hongyang / Yuan, Qixia | 2019
- 33
-
Statistical analysis of RNA backboneHershkovitz, E. / Sapiro, G. / Tannenbaum, A. / Williams, L.D. | 2006
- 33
-
Residue-Specific Side-Chain Polymorphismsvia Particle Belief PropagationSoltan Ghoraie, Laleh / Burkowski, Forbes / Li, Shuai Cheng / Zhu, Mu | 2014
- 36
-
Estimating Haplotype Frequencies by Combining Data from Large DNA Pools with Database InformationGasbarra, D / Kulathinal, S / Pirinen, M / Sillanpaa, M J | 2011
- 36
-
Predicting the Subcellular Localization of Proteins with Multiple Sites Based on Multiple Features FusionXumi Qu, / Dong Wang, / Yuehui Chen, / Shanping Qiao, / Qing Zhao, | 2016
- 37
-
Heuristic Bayesian Segmentation for Discovery of Coexpressed Genes within Genomic RegionsPehkonen, P. / Wong, G. / Toronen, P. | 2010
- 37
-
A Supervised Ensemble Approach for Sensitive microRNA Target PredictionMaji, Ranjan Kumar / Khatua, Sunirmal / Ghosh, Zhumur | 2020
- 37
-
Growing Seed Genes from Time Series Data and Thresholded Boolean Networks with PerturbationHiga, Carlos H.A. / Andrade, Tales P. / Hashimoto, Ronaldo F. | 2013
- 38
-
Attention Recognition in EEG-Based Affective Learning Research Using CFS+KNN AlgorithmBin Hu, / Xiaowei Li, / Shuting Sun, / Ratcliffe, Martyn | 2018
- 38
-
Radium isotopes in the Polish Outer Carpathian mineral waters of various chemical compositionChau, N.D. / Lucyna, R. / Jakub, N. / Pawel, J. | 2012
- 39
-
State of the transaction [IEEE/ACM Transactions on Computational Biology and Bioinformatics]Gusfield, D. | 2005
- 40
-
An Efficient Method for Modeling Kinetic Behavior of Channel Proteins in CardiomyocytesChong Wang, / Beyerlein, P. / Pospisil, H. / Krause, A. / Nugent, C. / Dubitzky, W. | 2012
- 40
-
Global Network Alignment in the Context of AgingFaisal, Fazle Elahi / Zhao, Han / Milenkovic, Tijana | 2015
- 40
-
Bases of motifs for generating repeated patterns with wild cardsPisanti, N. / Crochemore, M. / Grossi, R. / Sagot, M.F. | 2005
- 40
-
Accurate Cancer Classification Using Expressions of Very Few GenesLipo Wang, / Feng Chu, / Wei Xie, | 2007
- 42
-
Fireworks Algorithm with Enhanced Fireworks InteractionBei Zhang, / Yu-Jun Zheng, / Min-Xia Zhang, / Sheng-Yong Chen, | 2017
- 42
-
A New Unsupervised Binning Approachfor Metagenomic Sequences Based onN-grams and Automatic Feature WeightingLiao, Ruiqi / Zhang, Ruichang / Guan, Jihong / Zhou, Shuigeng | 2014
- 42
-
Statistical Characterization of Protein EnsemblesRother, D. / Sapiro, G. / Pande, V. | 2008
- 43
-
A Faster cDNA Microarray Gene Expression Data Classifier for Diagnosing DiseasesSun-Yuan Hsieh, / Yu-Chun Chou, | 2016
- 43
-
Adjacent Y-Ion Ratio Distributions and Its Application in Peptide SequencingWang, Tiancong / Ma, Bin | 2019
- 45
-
Relationships of 137Cs inventory with magnetic measures of calcareous soils of hilly region in IranAyoubi, S. / Ahmadi, M. / Abdi, M.R. / Afshar, F.A. | 2012
- 45
-
$F^2$Dock: Fast Fourier Protein-Protein DockingBajaj, C L / Chowdhury, R / Siddahanavalli, V | 2011
- 46
-
Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds MetricCardona, G. / Llabres, M. / Rossello, F. / Valiente, G. | 2009
- 46
-
Sequencing-by-hybridization revisited: the analog-spectrum proposalPreparata, F.P. | 2004
- 46
-
Bi-level and Bi-objective p-Median Type Problems for Integrative Clustering: Application to Analysis of Cancer Gene-Expression and Drug-Response DataUshakov, Anton V. / Klimentova, Xenia / Vasilyev, Igor | 2018
- 47
-
Gene mapping and marker clustering using Shannon's mutual informationDawy, Z. / Goebel, B. / Hagenauer, J. / Andreoli, C. / Meitinger, T. / Mueller, J.C. | 2006
- 47
-
An Application of the Bayesian Periodicity Test to Identify Diurnal Rhythm Genes in the BrainKocak, Mehmet / Mozhui, Khyobeni | 2020
- 50
-
Data-Fusion in Clustering Microarray Data: Balancing Discovery and InterpretabilityKustra, R. / Zagdanski, A. | 2010
- 50
-
Inference of the Genetic Network Regulating Lateral Root Initiation in Arabidopsis thalianaMuraro, D. / Voss, U. / Wilson, M. / Bennett, M. / Byrne, H. / De Smet, I. / Hodgman, C. / King, J. | 2013
- 51
-
Multiseed lossless filtrationKucherov, G. / Noe, L. / Roytberg, M. | 2005
- 52
-
Modelling the transfer of 14C from the atmosphere to grass: A case study in a grass field near AREVA-NC La HagueAulagnier, C. / Le Dizes, S. / Maro, D. / Hebert, D. / Lardy, R. / Martin, R. / Gonze, M.-A. | 2012
- 52
-
An Exact Algorithm for Sorting by Weighted Preserving Genome RearrangementsHartmann, Tom / Bernt, Matthias / Middendorf, Martin | 2019
- 52
-
An Information Theoretic Approach to Constructing Robust Boolean Gene Regulatory NetworksVasic, B. / Ravanmehr, V. / Krishnan, A. R. | 2012
- 53
-
Pure multiple RNA secondary structure alignments: a progressive profile approachHochsmann, M. / Voss, B. / Giegerich, R. | 2004
- 53
-
Reachability Analysis in Probabilistic Biological NetworksGabr, Haitham / Todor, Andrei / Dobra, Alin / Kahveci, Tamer | 2015
- 54
-
Correcting Base-Assignment Errors in Repeat Regions of Shotgun AssemblyDegui Zhi, / Keich, U. / Pevzner, P. / Heber, S. / Haixu Tang, | 2007
- 55
-
ChIP-PIT: Enhancing the Analysis of ChIP-Seq Data Using Convex-Relaxed Pair-Wise Interaction Tensor DecompositionLin Zhu, / Wei-Li Guo, / Su-Ping Deng, / De-Shuang Huang, | 2016
- 55
-
Gene Name Disambiguation UsingMulti-Scope Species DetectionHsiao, Jui-Chen / Wei, Chih-Hsuan / Kao, Hung-Yu | 2014
- 56
-
Assessing the Effectiveness of Causality Inference Methods for Gene Regulatory NetworksAhmed, Syed Sazzad / Roy, Swarup / Kalita, Jugal | 2020
- 56
-
A (1.5 + ε)-Approximation Algorithm for Unsigned Translocation DistanceYun Cui, / Lusheng Wang, / Darning Zhu, / Xiaowen Liu, | 2008
- 56
-
A (1.5 + Euro)-Approximation Algorithm for Unsigned Translocation DistanceCui, Y. / Wang, L. / Zhu, D. / Liu, X. | 2008
- 56
-
An Effective Application of Bacteria Quorum Sensing and Circular Elimination in MOPSOShan Cheng, / Long-Long Zhao, / Xiao-Yu Jiang, | 2017
- 57
-
A hidden Markov model for transcriptional regulation in single cellsGoutsias, J. | 2006
- 59
-
Fast Surface-Based Travel Depth Estimation Algorithm for Macromolecule Surface Shape DescriptionGiard, J / Rondao Alface, Patrice / Gala, J / Macq, B | 2011
- 60
-
Calculating the Expected Time to Eradicate HIV-1 Using a Markov ChainViswanath, Narayanan C. | 2018
- 60
-
Distribution of natural radionuclide concentrations in sediment samples in Didim and Izmir Bay (Aegean Sea-Turkey)Akozcan, S. | 2012
- 61
-
Mathematical Properties of the Deep Coalescence CostThan, Cuong V. / Rosenberg, Noah A. | 2013
- 62
-
Robustness of Topological Supertree Methods for Reconciling Dense Incompatible DataWillson, S.J. | 2009
- 62
-
Text Mining Biomedical Literature for Discovering Gene-to-Gene Relationships: A Comparative Study of AlgorithmsYing Liu, / Navathe, S.B. / Civera, J. / Dasigi, V. / Ram, A. / Ciliax, B.J. / Dingledine, R. | 2005
- 63
-
Reliable and Fast Estimation of Recombination Rates by Convergence Diagnosis and Parallel Markov Chain Monte CarloGuo, Jing / Jain, Ritika / Yang, Peng / Fan, Rui / Kwoh, Chee Keong / Zheng, Jie | 2014
- 63
-
[Advertisement]| 2004
- 63
-
An Integrated Reconciliation Framework for Domain, Gene, and Species Level EvolutionLi, Lei / Bansal, Mukul S. | 2019
- 64
-
Practical Guidelines for Incorporating Knowledge-Based and Data-Driven Strategies into the Inference of Gene Regulatory NetworksYu-Ting Hsiao, / Wei-Po Lee, / Wei Yang, / Muller, Stefan / Flamm, Christoph / Hofacker, Ivo / Kugler, Philipp | 2016
- 64
-
Multi-Objective Particle Swarm Optimization Approach for Cost-Based Feature Selection in ClassificationYong Zhang, / Dun-wei Gong, / Jian Cheng, | 2017
- 64
-
Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression DataRubel, O. / Weber, G.H. / Min-Yu Huang, / Bethel, E.W. / Biggin, M.D. / Fowlkes, C.C. / Luengo Hendriks, C.L. / Keranen, S.V.E. / Eisen, M.B. / Knowles, D.W. et al. | 2010
- 64
-
Call for Papers| 2004
- 64
-
Inorganic phosphorus fractionation and its translocation dynamics in a low-P soilYang, J.C. / Wang, Z.G. / Zhou, J. / Jiang, H.M. / Zhang, J.F. / Pan, P. / Han, Z. / Lu, C. / Li, L.L. / Ge, C.L. | 2012
- 65
-
Multiclass Cancer Classification Using Semisupervised Ellipsoid ARTMAP and Particle Swarm Optimization with Gene Expression DataRui Xu, / Anagnostopoulos, G.C. / Wunsch, D.C.I.I. | 2007
- 65
-
Introduction of new Associate Editor| 2004
- 66
-
Prediction of consensus RNA secondary structures including pseudoknotsWitwer, C. / Hofacker, I.L. / Stadler, P.F. | 2004
- 66
-
Assortative mixing in directed biological networksPiraveenan, M. / Prokopenko, M. / Zomaya, A. | 2012
- 67
-
GLProbs: Aligning Multiple Sequences AdaptivelyYe, Yongtao / Cheung, David Wai-lok / Wang, Yadong / Yiu, Siu-Ming / Zhan, Qing / Lam, Tak-Wah / Ting, Hing-Fung | 2015
- 67
-
A Novel Biologically and Psychologically Inspired Fuzzy Decision Support System: Hierarchical Complementary LearningTuan Zea Tan, / Geok See Ng, / Chai Quek, | 2008
- 68
-
Classification of State Trajectories in Gene Regulatory NetworksKarbalayghareh, Alireza / Braga-Neto, Ulisses / Jianping Hua, / Dougherty, Edward Russell | 2018
- 69
-
Finding Significant Matches of Position Weight Matrices in Linear TimePizzi, Cinzia / Rastas, Pasi / Ukkonen, Esko | 2011
- 70
-
Genetic effects of ionizing radiation - some questions with no answersMosse, I.B. | 2012
- 71
-
Class Balanced Multifactor Dimensionality Reduction to Detect Gene–Gene InteractionsYang, Cheng-Hong / Lin, Yu-Da / Chuang, Li-Yeh | 2020
- 72
-
A hill-climbing approach for automatic gridding of cDNA microarray imagesRueda, L. / Vidyadharan, V. | 2006
- 73
-
Mining Minimal Motif Pair Sets Maximally Covering Interactions in a Protein-Protein Interaction NetworkBoyen, Peter / Neven, Frank / van Dyck, Dries / Valentim, Felipe L. / van Dijk, Aalt D.J. | 2013
- 73
-
Identifying Cis-Regulatory Elements and Modules Using Conditional Random FieldsGan, Yanglan / Guan, Jihong / Zhou, Shuigeng / Zhang, Weixiong | 2014
- 76
-
The Identifiability of Covarion Models in PhylogeneticsAllman, E.S. / Rhodes, J.A. | 2009
- 76
-
The Intrinsic Geometric Structure of Protein-Protein Interaction Networks for Protein Interaction PredictionYi Fang, / Mengtian Sun, / Guoxian Dai, / Ramain, Karthik | 2016
- 76
-
A Novel Cluster Head Selection Algorithm Based on Fuzzy Clustering and Particle Swarm OptimizationQingjian Ni, / Qianqian Pan, / Huimin Du, / Cen Cao, / Yuqing Zhai, | 2017
- 76
-
Environmental assessment of gamma-radiation levels in stream sediments around Sharm El-Sheikh, South Sinai, EgyptAl-Sharkawy, A. / Hiekal, M.T. / Sherif, M.I. / Badran, H.M. | 2012
- 77
-
Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical GraphsNishiyama, Yuhei / Shurbevski, Aleksandar / Nagamochi, Hiroshi / Akutsu, Tatsuya | 2019
- 77
-
2004 Reviewers list| 2005
- 78
-
Predicting Protein-Protein Interactions from Protein Domains Using a Set Cover ApproachChengbang Huang, / Morcos, F. / Kanaan, S.P. / Wuchty, S. / Chen, D.Z. / Izaguirre, J.A. | 2007
- 78
-
The number of recombination events in a sample history: conflict graph and lower boundsBafna, V. / Bansal, V. | 2004
- 79
-
Prediction and Informative Risk Factor Selection of Bone DiseasesLi, Hui / Li, Xiaoyi / Ramanathan, Murali / Zhang, Aidong | 2015
- 79
-
Composition Vector Method Based on Maximum Entropy Principle for Sequence ComparisonChan, R. H. / Chan, T. H. / Hau Man Yeung, / Wang, R. W. | 2012
- 80
-
An Automatic Translation of SBML into Beta-BindersCiocchetta, F. / Priami, C. / Quaglia, P. | 2008
- 80
-
Fuzzy ARTMAP Prediction of Biological Activities for Potential HIV-1 Protease Inhibitors Using a Small Molecular Data SetAndonie, Razvan / Fabry-Asztalos, Levente / Abdul-Wahid, Christopher B / Abdul-Wahid, Sarah / Barker, Grant I / Magill, Lukas C | 2011
- 80
-
Multidimensional Profiling of Cell Surface Proteins and Nuclear MarkersJu Han, / Hang Chang, / Andarawewa, K. / Yaswen, P. / Barcellos-Hoff, M.H. / Parvin, B. | 2010
- 81
-
Guest Editors' Introduction to the Special Issue: Machine Learning for Bioinformatics-Part 1Ling, C.X. / Noble, W.S. / Qiang Yang, | 2005
- 82
-
Deep Learning for Plant Species Classification Using Leaf Vein MorphometricTan, Jing Wei / Chang, Siow-Wee / Abdul-Kareem, Sameem / Yap, Hwa Jen / Yong, Kien-Thai | 2020
- 83
-
Evolution and Controllability of CancerNetworks: A Boolean PerspectiveSrihari, Sriganesh / Raman, Venkatesh / Wai Leong, Hon / Ragan, Mark A. | 2014
- 83
-
Attribute clustering for grouping, selection, and classification of gene expression dataWai-Ho Au, / Chan, K.C.C. / Wong, A.K.C. / Yang Wang, | 2005
- 83
-
Combinatorics of Tandem Duplication Random Loss Mutations on Circular GenomesHartmann, Tom / An-Chiang Chu, / Middendorf, Martin / Bernt, Matthias | 2018
- 83
-
A prediction model for assessing residential radon concentration in SwitzerlandHauri, D.D. / Huss, A. / Zimmermann, F. / Kuehni, C.E. / Roosli, M. | 2012
- 84
-
Unicyclic networks: compatibility and enumerationSemple, C. / Steel, M. | 2006
- 85
-
A Gene Selection Method for Microarray Data Based on Binary PSO Encoding Gene-to-Class Sensitivity InformationFei Han, / Chun Yang, / Ya-Qi Wu, / Jian-Sheng Zhu, / Qing-Hua Ling, / Yu-Qing Song, / De-Shuang Huang, | 2017
- 86
-
A Novel Teaching-Learning-Based Optimization for Improved Mutagenic Primer Design in Mismatch PCR-RFLP SNP GenotypingYu-Huei Cheng, | 2016
- 87
-
Multiclass Gene Selection Using Pareto-FrontsRajapakse, Jagath C. / Mundra, Piyushkumar A. | 2013
- 88
-
Accuracy Assessment of Diploid Consensus SequencesJong Hyun Kim, / Waterman, M.S. / Li, L.M. | 2007
- 88
-
Disease Liability Prediction from Large Scale Genotyping Data Using Classifiers with a Reject OptionQuevedo, J. R. / Bahamonde, A. / Perez-Enciso, M. / Luaces, O. | 2012
- 89
-
Fourier Transform Inequalities for Phylogenetic TreesMatsen, F.A. | 2009
- 90
-
Retrospective measurements of airborne 129Iodine in AustriaJabbar, T. / Wallner, G. / Steier, P. / Katzlberger, C. / Kandler, N. | 2012
- 91
-
Deep Manifold Preserving Autoencoder for Classifying Breast Cancer Histopathological ImagesFeng, Yangqin / Zhang, Lei / Mo, Juan | 2020
- 91
-
Predicting Novel Human Gene Ontology Annotations Using Semantic AnalysisDone, B. / Khatri, P. / Done, A. / Draghici, S. | 2010
- 91
-
A uniform projection method for motif discovery in DNA sequencesRaphael, B. / Lung-Tien Liu, / Varghese, G. | 2004
- 91
-
Modeling and Simulation Studies of Complex Biological Systems for Precision Medicine and HealthcareShen, Bairong / Jiang, Xiaoqian / Zhao, Xingming | 2019
- 91
-
Combinatorial Approaches for Mass Spectra RecalibrationBocker, S. / Makinen, V. | 2008
- 92
-
Capturing Uncertainty by Modeling Local Transposon Insertion Frequencies Improves Discrimination of Essential GenesDeJesus, Michael A. / Ioerger, Thomas R. | 2015
- 92
-
A short proof that phylogenetic tree reconstruction by maximum likelihood is hardRoch, S. | 2006
- 93
-
SAFETY: Secure gwAs in Federated Environment through a hYbrid SolutionSadat, Md Nazmus / Al Aziz, Md Momin / Mohammed, Noman / Chen, Feng / Jiang, Xiaoqian / Wang, Shuang | 2019
- 94
-
Genetic Networks and Soft ComputingMitra, Sushmita / Das, Ranajit / Hayashi, Yoichi | 2011
- 95
-
A Survey and Comparative Study of Statistical Tests for Identifying Differential Expressionfrom Microarray DataBandyopadhyay, Sanghamitra / Mallik, Saurav / Mukhopadhyay, Anirban | 2014
- 95
-
SURVEY PAPERS - A Survey and Comparative Study of Statistical Tests for Identifying Differential Expression from Microarray DataBandyopadhyay, S / Mallik, S / Mukhopadhyay, A | 2014
- 95
-
2005 Reviewers List| 2006
- 96
-
Estimation of the radiological background and dose assessment in areas with naturally occurring uranium geochemical anomalies-a case study in the Iberian Massif (Central Portugal)Pereira, A.J.S.C. / Neves, L.J.P.F. | 2012
- 96
-
Outgoing EIC Editorial for this Special Section of TCBB with the Theme of PhylogeneticsGusfield, Dan | 2009
- 96
-
Complexity and Algorithms for Finding a Perfect Phylogeny from Mixed Tumor SamplesHujdurovic, Ademir / Kacar, Ursa / Milanic, Martin / Ries, Bernard / Tomescu, Alexandru I. | 2018
- 97
-
Three-Dimensional Path Planning for Uninhabited Combat Aerial Vehicle Based on Predator-Prey Pigeon-Inspired Optimization in Dynamic EnvironmentBo Zhang, / Haibin Duan, | 2017
- 97
-
Maximum Parsimony for Tree MixturesGrunewald, S. / Moulton, V. | 2009
- 98
-
Bayesian segmental models with multiple sequence alignment profiles for protein secondary structure and contact map predictionWei Chu, / Ghahramani, Z. / Podtelezhnikov, A. / Wild, D.L. | 2006
- 98
-
Colored de Bruijn Graphs and the Genome Halving ProblemAlekseyev, M.A. / Pevzner, P.A. | 2007
- 98
-
Parametric Estimation of the Local False Discovery Rate for Identifying Genetic AssociationsYang, Ye / Aghababazadeh, Farnoosh Abbas / Bickel, David R. | 2013
- 98
-
A stochastic downhill search algorithm for estimating the local false discovery rateScheid, S. / Spang, R. | 2004
- 98
-
Drosophila Gene Expression Pattern Annotation through Multi-Instance Multi-Label LearningYing-Xin Li, / Shuiwang Ji, / Kumar, S. / Jieping Ye, / Zhi-Hua Zhou, | 2012
- 99
-
Discovering Motifs in Biological Sequences Using the Micron Automata ProcessorRoy, Indranil / Aluru, Srinivas | 2016
- 100
-
Sparse Support Vector Machines with L_{p} Penalty for Biomarker IdentificationZhenqiu Liu, / Shili Lin, / Tan, M.T. | 2010
- 101
-
Computational Problems in Perfect Phylogeny Haplotyping: Typing without Calling the AlleleBarzuza, T. / Beckmann, J.S. / Shamir, R. | 2008
- 102
-
Disruption of Protein Complexes from Weighted Complex NetworksHabibi, Mahnaz / Khosravi, Pegah | 2020
- 102
-
Joint classification and pairing of human chromosomesBiyani, P. / Xiaolin Wu, / Sinha, A. | 2005
- 103
-
Drawing Rooted Phylogenetic NetworksHuson, D.H. | 2009
- 103
-
A Deep Learning Network Approach to ab initio Protein Secondary Structure PredictionSpencer, Matt / Eickholt, Jesse / Cheng, Jianlin | 2015
- 103
-
Are My EHRs Private Enough? Event-Level Privacy ProtectionMao, Chengsheng / Zhao, Yuan / Sun, Mengxin / Luo, Yuan | 2019
- 108
-
Distorted Metrics on Trees and Phylogenetic ForestsMossel, E. | 2007
- 108
-
A Multiple-Filter-Multiple-Wrapper Approach to Gene Selection and Microarray Data ClassificationYukyee Leung, / Yeungsam Hung, | 2010
- 108
-
Solving NP-Hard Problems with Physarum-Based Ant Colony SystemYuxin Liu, / Chao Gao, / Zili Zhang, / Yuxiao Lu, / Shi Chen, / Mingxin Liang, / Li Tao, | 2017
- 108
-
Identification and Modeling of Genes with Diurnal Oscillations from Microarray Time Series DataWenxue Wang, / Ghosh, Bijoy K / Pakrasi, Himadri | 2011
- 108
-
Chemical studies on polyaniline titanotungstate and its uses to reduction cesium from solutions and polluted milkEl-Naggar, I.M. / Zakaria, E.S. / Ali, I.M. / Khalil, M. / El-Shahat, M.F. | 2012
- 109
-
Constructing splits graphsDress, A.W.M. / Huson, D.H. | 2004
- 109
-
Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology InformationWei Zhang, / Jia Xu, / Yuanyuan Li, / Xiufen Zou, | 2018
- 109
-
Probabilistic Biological Network AlignmentTodor, Andrei / Dobra, Alin / Kahveci, Tamer | 2013
- 110
-
Consistency of Topological Moves Based on the Balanced Minimum Evolution Principle of Phylogenetic InferenceBordewich, M. / Gascuel, O. / Huber, K.T. / Moulton, V. | 2009
- 110
-
Drug Selection via Joint Push and Learning to RankHe, Yicheng / Liu, Junfeng / Ning, Xia | 2020
- 110
-
DNA Motif Representation with Nucleotide DependencyChin, F. / Leung, H.C. | 2008
- 110
-
Semisupervised learning for molecular profilingFurlanello, C. / Serafini, M. / Merler, S. / Jurman, G. | 2005
- 112
-
Fractal Behavior of the Pancreatic β-Cell Near the Percolation Threshold: Effect of the KATP Channel On the Electrical ResponseBahlouli, S. / Mokaddem, A. / Hamdache, F. / Riane, H. / Kameche, M. | 2016
- 113
-
Inferring the Number of Contributors to Mixed DNA ProfilesPaoletti, D. R. / Krane, D. E. / Raymer, M. L. / Doom, T. E. | 2012
- 113
-
A Hierarchical Clustering Method of Selecting Kernel SNP to Unify Informative SNP and Tag SNPLiao, Bo / Li, Xiong / Cai, Lijun / Cao, Zhi / Chen, Haowen | 2015
- 113
-
SecureLR: Secure Logistic Regression Model via a Hybrid Cryptographic ProtocolJiang, Yichen / Hamer, Jenny / Wang, Chenghong / Jiang, Xiaoqian / Kim, Miran / Song, Yongsoo / Xia, Yuhou / Mohammed, Noman / Sadat, Md Nazmus / Wang, Shuang | 2019
- 114
-
Functional census of mutation sequence spaces: the example of p53 cancer rescue mutantsDanziger, S.A. / Swamidass, S.J. / Jue Zeng, / Dearth, L.R. / Qiang Lu, / Chen, J.H. / Cheng, J. / Hoang, V.P. / Saigo, H. / Luo, R. et al. | 2006
- 116
-
A New Path Based Hybrid Measurefor Gene Ontology SimilarityBandyopadhyay, Sanghamitra / Mallick, Koushik | 2014
- 116
-
Improved gapped alignment in BLASTCameron, M. / Williams, H.E. / Cannane, A. | 2004
- 117
-
Efficient Algorithms for Sequence Analysis with Entropic ProfilesPizzi, Cinzia / Ornamenti, Mattia / Spangaro, Simone / Rombo, Simona E. / Parida, Laxmi | 2018
- 117
-
DNA Deformation Energy as an Indirect Recognition Mechanism in Protein-DNA InteractionsAeling, K.A. / Steffen, N.R. / Johnson, M. / Hatfield, G.W. / Lathrop, R.H. / Senear, D.F. | 2007
- 118
-
Refining Phylogenetic Trees Given Additional Data: An Algorithm Based on ParsimonyTaoyang Wu, / Moulton, V. / Steel, M. | 2009
- 118
-
A Trade-Off between Sample Complexity and Computational Complexity in Learning Boolean Networks from Time-Series DataPerkins, T.J. / Hallett, M.T. | 2010
- 118
-
Determination of dose rate from Chernobyl-derived radiocaesium in Estonian soilLust, M. / Realo, E. | 2012
- 119
-
Essential latent knowledge for protein-protein interactions: analysis by an unsupervised learning approachMamitsuka, H. | 2005
- 120
-
Novel Algorithm for Coexpression Detection in Time-Varying Microarray DatasetsZong-Xian Yin, / Jung-Hsien Chiang, | 2008
- 121
-
A Graph-Theoretical Approach for Motif Discovery in Protein SequencesCzeizler, Elena / Hirvola, Tommi / Karhu, Kalle | 2017
- 122
-
Rearrangement-Based Phylogeny Using the Single-Cut-or-Join OperationBiller, Priscila / Feijao, Pedro / Meidanis, Joao | 2013
- 122
-
Improving the Computational Efficiency of Recursive Cluster Elimination for Gene SelectionLin-Kai Luo, / Deng-Feng Huang, / Ling-Jun Ye, / Qi-Feng Zhou, / Gui-Fang Shao, / Hong Peng, | 2011
- 122
-
gEFM: An Algorithm for Computing Elementary Flux Modes Using Graph TraversalUllah, Ehsan / Aeron, Shuchin / Hassoun, Soha | 2016
- 123
-
A Maximum A Posteriori Probability and Time-Varying Approach for Inferring Gene Regulatory Networks from Time Course Gene Microarray DataChan, Shing-Chow / Zhang, Li / Wu, Ho-Chun / Tsui, Kai-Man | 2015
- 123
-
Intervention in Gene Regulatory Networks via Phenotypically Constrained Control Policies Based on Long-Run BehaviorXiaoning Qian, / Dougherty, E. R. | 2012