Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus Approach (English)
- New search for: Bayat, Arash
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https://orcid.org/0000-0002-8799-7776
- New search for: Deshpande, Nandan P.
- New search for: Wilkins, Marc R.
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https://orcid.org/0000-0002-5700-5684
- New search for: Parameswaran, Sri
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Title:Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus Approach
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Published in:IEEE/ACM Transactions on Computational Biology and Bioinformatics ; 17 ; 1 ; 334-338
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Publication date:2020-01-01
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Size:970770 byte
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Table of contents – Volume 17, Issue 1
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1
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2019 Index IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 16| 2020
- 1
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Algorithms for Computational Biology: Fifth EditionMartin-Vide, Carlos / Vega-Rodriguez, Miguel A. | 2020
- 2
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Heuristics for the Reversal and Transposition Distance ProblemBrito, Klairton Lima / Oliveira, Andre Rodrigues / Dias, Ulisses / Dias, Zanoni | 2020
- 14
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Polynomial-Time Algorithms for Phylogenetic Inference Problems Involving Duplication and Reticulationvan Iersel, Leo / Janssen, Remie / Jones, Mark / Murakami, Yukihiro / Zeh, Norbert | 2020
- 27
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A Promising Method for Calculating True Steady-State Metabolite Concentrations in Large-Scale Metabolic Reaction Network ModelsMiyawaki-Kuwakado, Atsuko / Komori, Soichiro / Shiraishi, Fumihide | 2020
- 37
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A Supervised Ensemble Approach for Sensitive microRNA Target PredictionMaji, Ranjan Kumar / Khatua, Sunirmal / Ghosh, Zhumur | 2020
- 47
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An Application of the Bayesian Periodicity Test to Identify Diurnal Rhythm Genes in the BrainKocak, Mehmet / Mozhui, Khyobeni | 2020
- 56
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Assessing the Effectiveness of Causality Inference Methods for Gene Regulatory NetworksAhmed, Syed Sazzad / Roy, Swarup / Kalita, Jugal | 2020
- 71
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Class Balanced Multifactor Dimensionality Reduction to Detect Gene–Gene InteractionsYang, Cheng-Hong / Lin, Yu-Da / Chuang, Li-Yeh | 2020
- 82
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Deep Learning for Plant Species Classification Using Leaf Vein MorphometricTan, Jing Wei / Chang, Siow-Wee / Abdul-Kareem, Sameem / Yap, Hwa Jen / Yong, Kien-Thai | 2020
- 91
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Deep Manifold Preserving Autoencoder for Classifying Breast Cancer Histopathological ImagesFeng, Yangqin / Zhang, Lei / Mo, Juan | 2020
- 102
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Disruption of Protein Complexes from Weighted Complex NetworksHabibi, Mahnaz / Khosravi, Pegah | 2020
- 110
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Drug Selection via Joint Push and Learning to RankHe, Yicheng / Liu, Junfeng / Ning, Xia | 2020
- 124
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EL_LSTM: Prediction of DNA-Binding Residue from Protein Sequence by Combining Long Short-Term Memory and Ensemble LearningZhou, Jiyun / Lu, Qin / Xu, Ruifeng / Gui, Lin / Wang, Hongpeng | 2020
- 136
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Fast de Bruijn Graph Compaction in Distributed Memory EnvironmentsPan, Tony / Nihalani, Rahul / Aluru, Srinivas | 2020
- 149
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GaMRed—Adaptive Filtering of High-Throughput Biological DataMarczyk, Michal / Jaksik, Roman / Polanski, Andrzej / Polanska, Joanna | 2020
- 158
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Generation of Level-$k$k LGT NetworksPons, Joan Carles / Scornavacca, Celine / Cardona, Gabriel | 2020
- 165
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Identifying “Many-to-Many” Relationships between Gene-Expression Data and Drug-Response Data via Sparse Binary MatchingCai, Jiulun / Cai, Hongmin / Chen, Jiazhou / Yang, Xi | 2020
- 177
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Improving de novo Assembly Based on Read ClassificationLiao, Xingyu / Li, Min / Luo, Junwei / Zou, You / Wu, Fang-Xiang / Pan, Yi / Luo, Feng / Wang, Jianxin | 2020
- 189
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LPGNMF: Predicting Long Non-Coding RNA and Protein Interaction Using Graph Regularized Nonnegative Matrix FactorizationZhang, Tianyi / Wang, Minghui / Xi, Jianing / Li, Ao | 2020
- 198
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Microarray-Based Quality Assessment as a Supporting Criterion for de novo Transcriptome Assembly SelectionCarvajal-Lopez, Patricia / Von Borstel, Fernando D. / Torres, Amada / Rustici, Gabriella / Gutierrez, Joaquin / Romero-Vivas, Eduardo | 2020
- 207
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Multi-Factored Gene-Gene Proximity Measures Exploiting Biological Knowledge Extracted from Gene Ontology: Application in Gene ClusteringAcharya, Sudipta / Saha, Sriparna / Pradhan, Prasanna | 2020
- 220
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MultiMotifMaker: A Multi-Thread Tool for Identifying DNA Methylation Motifs from Pacbio ReadsLi, Tao / Zhang, Xiankai / Luo, Feng / Wu, Fang-Xiang / Wang, Jianxin | 2020
- 226
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Nature-Inspired Multiobjective Epistasis Elucidation from Genome-Wide Association StudiesLi, Xiangtao / Zhang, Shixiong / Wong, Ka-Chun | 2020
- 238
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NMFGO: Gene Function Prediction via Nonnegative Matrix Factorization with Gene OntologyYu, Guoxian / Wang, Keyao / Fu, Guangyuan / Guo, Maozu / Wang, Jun | 2020
- 250
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Optimal Bayesian Filtering for Biomarker Discovery: Performance and RobustnessForoughi pour, Ali / Dalton, Lori A. | 2020
- 264
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PolyCluster: Minimum Fragment Disagreement Clustering for Polyploid PhasingMazrouee, Sepideh / Wang, Wei | 2020
- 278
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Rapid Reconstruction of Time-Varying Gene Regulatory NetworksPyne, Saptarshi / Kumar, Alok Ranjan / Anand, Ashish | 2020
- 292
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Stepwise Tikhonov Regularisation: Application to the Prediction of HIV-1 Drug ResistanceDelgado, Ramon A. / Chen, Zhiyong / Middleton, Richard H. | 2020
- 302
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Using Emulation to Engineer and Understand Simulations of Biological SystemsAlden, Kieran / Cosgrove, Jason / Coles, Mark / Timmis, Jon | 2020
- 316
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A Note on GRegNetSim: A Tool for the Discrete Simulation and Analysis of Genetic Regulatory NetworksGanor, Dor / Pinter, Ron Y. / Zehavi, Meirav | 2020
- 321
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BiModule: Biclique Modularity Strategy for Identifying Transcription Factor and microRNA Co-Regulatory ModulesPan, Chu / Luo, Jiawei / Zhang, Jiao / Li, Xin | 2020
- 327
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Deleterious Non-Synonymous Single Nucleotide Polymorphism Predictions on Human Transcription FactorsWong, Ka-Chun / Yan, Shankai / Lin, Qiuzhen / Li, Xiangtao / Peng, Chengbin | 2020
- 334
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Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus ApproachBayat, Arash / Deshpande, Nandan P. / Wilkins, Marc R. / Parameswaran, Sri | 2020
- 339
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Gene Regulatory Relationship Mining Using Improved Three-Phase Dependency Analysis ApproachLiu, Jianxiao / Yan, Jianbing / Tian, Zonglin / Xiao, Yingjie / Liu, Haijun / Hao, Songlin / Zhang, Xiaolong / Wang, Chaoyang / Sun, Jianchao / Yu, Huan | 2020
- 347
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Heterogeneous Domain Adaptation for IHC Classification of Breast Cancer SubtypesIsmailoglu, Firat / Cavill, Rachel / Smirnov, Evgueni / Zhou, Shuang / Collins, Pieter / Peeters, Ralf | 2020
- 354
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Softepigen: Primers Design Web-Based Tool for MS-HRM TechniquePinzon-Reyes, Efrain / Alvarez, William Armando / Rondon-Villarreal, Paola / Hernandez, Hernan Guillermo | 2020
- 358
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Using Unlabeled Data to Discover Bivariate Causality with Deep Restricted Boltzmann MachinesSokolovska, Nataliya / Permiakova, Olga / Forslund, Sofia K. / Zucker, Jean-Daniel | 2020
- 365
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Correction to “Identification of Novel Scaffolds with Dual Role as Antiepileptic and Anti-Breast Cancer”Rampogu, Shailima / Park, Seok Ju / Lee, Keun Woo / Baek, Ayoung / Bavi, Rohit / Son, Minky / Cao, Guang Ping / Kumar, Raj / Park, Chanin / Zeb, Amir et al. | 2020