Dense water plumes modulate richness and productivity of deep sea microbes (English)
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In:
Environmental Microbiology
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18
, 12
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4537-4548
;
2016
- Article (Journal) / Electronic Resource
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Title:Dense water plumes modulate richness and productivity of deep sea microbes
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Contributors:Luna, Gian Marco ( author ) / Chiggiato, Jacopo ( author ) / Quero, Grazia Marina ( author ) / Schroeder, Katrin ( author ) / Bongiorni, Lucia ( author ) / Kalenitchenko, Dimitri ( author ) / Galand, Pierre E. ( author )
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Published in:Environmental Microbiology ; 18, 12 ; 4537-4548
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Publisher:
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Publication date:2016-12-01
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Size:12 pages
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 18, Issue 12
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 4307
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Rhizobia: tractable models for bacterial evolutionary ecologyHeath, Katy D. / Grillo, Michael A. et al. | 2016
- 4312
-
Nutrient pulses driven by internal solitary waves enhance heterotrophic bacterial growth in the South China SeaChen, Tzong‐Yueh / Tai, Jen‐Hua / Ko, Chia‐Ying / Hsieh, Chih‐hao / Chen, Chung‐Chi / Jiao, Nianzhi / Liu, Hong‐Bin / Shiah, Fuh‐Kwo et al. | 2016
- 4324
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Stratification of archaeal membrane lipids in the ocean and implications for adaptation and chemotaxonomy of planktonic archaeaZhu, Chun / Wakeham, Stuart G. / Elling, Felix J. / Basse, Andreas / Mollenhauer, Gesine / Versteegh, Gerard J. M. / Könneke, Martin / Hinrichs, Kai‐Uwe et al. | 2016
- 4337
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New biosynthetic pathway for pink pigments from uncultured oceanic virusesLedermann, Benjamin / Béjà, Oded / Frankenberg‐Dinkel, Nicole et al. | 2016
- 4348
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Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal ventingMeier, Dimitri V. / Bach, Wolfgang / Girguis, Peter R. / Gruber‐Vodicka, Harald R. / Reeves, Eoghan P. / Richter, Michael / Vidoudez, Charles / Amann, Rudolf / Meyerdierks, Anke et al. | 2016
- 4369
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Response of bacterial communities from California coastal waters to alginate particles and an alginolytic Alteromonas macleodii strainMitulla, Maximilian / Dinasquet, Julie / Guillemette, Ryan / Simon, Meinhard / Azam, Farooq / Wietz, Matthias et al. | 2016
- 4378
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Impact of an intense water column mixing (0–1500 m) on prokaryotic diversity and activities during an open‐ocean convection event in the NW Mediterranean SeaSeverin, Tatiana / Sauret, Caroline / Boutrif, Mehdi / Duhaut, Thomas / Kessouri, Fayçal / Oriol, Louise / Caparros, Jocelyne / Pujo‐Pay, Mireille / Durrieu de Madron, Xavier / Garel, Marc et al. | 2016
- 4391
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Partitioning of functional and taxonomic diversity in surface‐associated microbial communitiesRoth‐Schulze, Alexandra J. / Zozaya‐Valdés, Enrique / Steinberg, Peter D. / Thomas, Torsten et al. | 2016
- 4403
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Competitive advantage and higher fitness in native populations of genetically structured planktonic diatomsSildever, Sirje / Sefbom, Josefin / Lips, Inga / Godhe, Anna et al. | 2016
- 4412
-
Pigment variations in Emiliania huxleyi (CCMP370) as a response to changes in light intensity or qualityGarrido, José L. / Brunet, Christophe / Rodríguez, Francisco et al. | 2016
- 4426
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Culture‐independent characterization of novel psychrophilic magnetotactic cocci from Antarctic marine sedimentsAbreu, Fernanda / Carolina, Ana / Araujo, V. / Leão, Pedro / Silva, Karen Tavares / Carvalho, Fabíola Marques de / Cunha, Oberdan de Lima / Almeida, Luiz Gonzaga / Geurink, Corey / Farina, Marcos et al. | 2016
- 4442
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Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent watersBrindefalk, Björn / Ekman, Martin / Ininbergs, Karolina / Dupont, Christopher L. / Yooseph, Shibu / Pinhassi, Jarone / Bergman, Birgitta et al. | 2016
- 4456
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Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North AtlanticBennke, Christin M. / Krüger, Karen / Kappelmann, Lennart / Huang, Sixing / Gobet, Angélique / Schüler, Margarete / Barbe, Valérie / Fuchs, Bernhard M. / Michel, Gurvan / Teeling, Hanno et al. | 2016
- 4471
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Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environmentsMatos, Marina N. / Lozada, Mariana / Anselmino, Luciano E. / Musumeci, Matías A. / Henrissat, Bernard / Jansson, Janet K. / Mac Cormack, Walter P. / Carroll, JoLynn / Sjöling, Sara / Lundgren, Leif et al. | 2016
- 4485
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Spatial and temporal variability of aerobic anoxygenic photoheterotrophic bacteria along the east coast of AustraliaBibiloni‐Isaksson, Jaime / Seymour, Justin R. / Ingleton, Tim / van de Kamp, Jodie / Bodrossy, Levente / Brown, Mark V. et al. | 2016
- 4501
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Analysis of Gambierdiscus transcriptome data supports ancient origins of mixotrophic pathways in dinoflagellatesPrice, Dana C. / Farinholt, Natalie / Gates, Colin / Shumaker, Alexander / Wagner, Nicole E. / Bienfang, Paul / Bhattacharya, Debashish et al. | 2016
- 4511
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Enhanced viral activity and dark CO2 fixation rates under oxygen depletion: the case study of the marine Lake RogoznicaRastelli, Eugenio / Corinaldesi, Cinzia / Petani, Bruna / Dell'Anno, Antonio / Ciglenečki, Irena / Danovaro, Roberto et al. | 2016
- 4523
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New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenaseVekeman, Bram / Kerckhof, Frederiek‐Maarten / Cremers, Geert / de Vos, Paul / Vandamme, Peter / Boon, Nico / Op den Camp, Huub J.M. / Heylen, Kim et al. | 2016
- 4537
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Dense water plumes modulate richness and productivity of deep sea microbesLuna, Gian Marco / Chiggiato, Jacopo / Quero, Grazia Marina / Schroeder, Katrin / Bongiorni, Lucia / Kalenitchenko, Dimitri / Galand, Pierre E. et al. | 2016
- 4549
-
Oligotrophic lagoons of the South Pacific Ocean are home to a surprising number of novel eukaryotic microorganismsKim, Eunsoo / Sprung, Ben / Duhamel, Solange / Filardi, Christopher / Kyoon Shin, Mann et al. | 2016
- 4564
-
Structure and temporal dynamics of the bacterial communities associated to microhabitats of the coral Oculina patagonicaRubio‐Portillo, Esther / Santos, Fernando / Martínez‐García, Manuel / de los Ríos, Asunción / Ascaso, Carmen / Souza‐Egipsy, Virginia / Ramos‐Esplá, Alfonso A. / Anton, Josefa et al. | 2016
- 4579
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Acidification and warming affect prominent bacteria in two seasonal phytoplankton bloom mesocosmsBergen, Benjamin / Endres, Sonja / Engel, Anja / Zark, Maren / Dittmar, Thorsten / Sommer, Ulrich / Jürgens, Klaus et al. | 2016
- 4596
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Cell‐specific nitrogen‐ and carbon‐fixation of cyanobacteria in a temperate marine system (Baltic Sea)Klawonn, I. / Nahar, N. / Walve, J. / Andersson, B. / Olofsson, M. / Svedén, J. B. / Littmann, S. / Whitehouse, M. J. / Kuypers, M. M. M. / Ploug, H et al. | 2016
- 4610
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Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae‐associated bacterium Zobellia galactanivorans DsijTBarbeyron, Tristan / Thomas, François / Barbe, Valérie / Teeling, Hanno / Schenowitz, Chantal / Dossat, Carole / Goesmann, Alexander / Leblanc, Catherine / Oliver Glöckner, Frank / Czjzek, Mirjam et al. | 2016
- 4628
-
Mode of resistance to viral lysis affects host growth across multiple environments in the marine picoeukaryote Ostreococcus tauriHeath, Sarah E. / Collins, Sinead et al. | 2016
- 4640
-
Anthropogenic effects on bacterial diversity and function along a river‐to‐estuary gradient in Northwest Greece revealed by metagenomicsMeziti, Alexandra / Tsementzi, Despina / Ar. Kormas, Konstantinos / Karayanni, Hera / Konstantinidis, Konstantinos T. et al. | 2016
- 4653
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Genetic and functional characterization of a novel meta‐pathway for degradation of naringenin in Herbaspirillum seropedicae SmR1Maria Marin, Anelis / de la Torre, Jésus / Ricardo Marques Oliveira, Alfredo / Barison, Andersson / Satie Chubatsu, Leda / Adele Monteiro, Rose / de Oliveira Pedrosa, Fabio / Maltempi de Souza, Emanuel / Wassem, Roseli / Duque, Estrella et al. | 2016
- 4662
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Tree species, spatial heterogeneity, and seasonality drive soil fungal abundance, richness, and composition in Neotropical rainforestsKivlin, Stephanie N. / Hawkes, Christine V. et al. | 2016
- 4674
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Metabolome‐mediated biocryomorphic evolution promotes carbon fixation in Greenlandic cryoconite holesCook, Joseph M. / Edwards, Arwyn / Bulling, Mark / Mur, Luis A. J. / Cook, Sophie / Gokul, Jarishma K. / Cameron, Karen A. / Sweet, Michael / Irvine‐Fynn, Tristram D. L. et al. | 2016
- 4687
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Functional analysis of Agaricus bisporus serine proteinase 1 reveals roles in utilization of humic rich substrates and adaptation to the leaf‐litter ecological nicheHeneghan, Mary N. / Burns, Claire / Costa, Ana M. S. B. / Burton, Kerry S. / Challen, Michael P. / Bailey, Andy M. / Foster, Gary D. et al. | 2016
- 4697
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Type II NADH:quinone oxidoreductase family: phylogenetic distribution, structural diversity and evolutionary divergencesMarreiros, Bruno C. / Sena, Filipa V. / Sousa, Filipe M. / Batista, Ana P. / Pereira, Manuela M. et al. | 2016
- 4710
-
Comparative and transcriptional analysis of the predicted secretome in the lignocellulose‐degrading basidiomycete fungus Pleurotus ostreatusAlfaro, Manuel / Castanera, Raúl / Lavín, José L. / Grigoriev, Igor V. / Oguiza, José A. / Ramírez, Lucía / Pisabarro, Antonio G. et al. | 2016
- 4727
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Insights into the biodiversity of the gut microbiota of broiler chickensMancabelli, Leonardo / Ferrario, Chiara / Milani, Christian / Mangifesta, Marta / Turroni, Francesca / Duranti, Sabrina / Lugli, Gabriele Andrea / Viappiani, Alice / Ossiprandi, Maria Cristina / van Sinderen, Douwe et al. | 2016
- 4739
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Environmental filtering decreases with fish development for the assembly of gut microbiotaYan, Qingyun / Li, Jinjin / Yu, Yuhe / Wang, Jianjun / He, Zhili / Van Nostrand, Joy D. / Kempher, Megan L. / Wu, Liyou / Wang, Yaping / Liao, Lanjie et al. | 2016
- 4755
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The distribution, diversity and function of predominant Thermoproteales in high‐temperature environments of Yellowstone National ParkJay, Zackary J. / Beam, Jacob P. / Kozubal, Mark A. / Jennings, Ryan deM. / Rusch, Douglas B. / Inskeep, William P. et al. | 2016
- 4770
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Genome‐wide identification and characterization of macrolide glycosyltransferases from a marine‐derived Bacillus strain and their phylogenetic distributionLiu, Yang / Qin, Wen / Liu, Quanquan / Zhang, Jun / Li, Huayue / Xu, Shanshan / Ren, Pengfei / Tian, Li / Li, Wenli et al. | 2016
- 4782
-
Phosphate and ATP uptake by lake bacteria: does taxonomical identity matter?Rofner, Carina / Sommaruga, Ruben / Teresa Pérez, María et al. | 2016
- 4794
-
A multiproxy approach to evaluate biocidal treatments on biodeteriorated majolica glazed tilesCoutinho, M. L. / Miller, A. Z. / Martin‐Sanchez, P. M. / Mirão, J. / Gomez‐Bolea, A. / Machado‐Moreira, B. / Cerqueira‐Alves, L. / Jurado, V. / Saiz‐Jimenez, C. / Lima, A. et al. | 2016
- 4817
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Native plasmids restrict growth of Phaeobacter inhibens DSM 17395: Energetic costs of plasmids assessed by quantitative physiological analysesTrautwein, Kathleen / Will, Sabine Eva / Hulsch, Reiner / Maschmann, Uwe / Wiegmann, Katharina / Hensler, Michael / Michael, Victoria / Ruppersberg, Hanna / Wünsch, Daniel / Feenders, Christoph et al. | 2016
- 4830
-
A transposon present in specific strains of Bacillus subtilis negatively affects nutrient‐ and dodecylamine‐induced spore germinationKrawczyk, Antonina O. / Berendsen, Erwin M. / de Jong, Anne / Boekhorst, Jos / Wells‐Bennik, Marjon H. J. / Kuipers, Oscar P. / Eijlander, Robyn T. et al. | 2016
- 4847
-
Prediction of bacterial associations with plants using a supervised machine‐learning approachMartínez‐García, Pedro Manuel / López‐Solanilla, Emilia / Ramos, Cayo / Rodríguez‐Palenzuela, Pablo et al. | 2016
- 4862
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Species‐sorting and mass‐transfer paradigms control managed natural metacommunitiesGünther, Susanne / Faust, Karoline / Schumann, Joachim / Harms, Hauke / Raes, Jeroen / Müller, Susann et al. | 2016
- 4878
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Expanded insecticide catabolic activity gained by a single nucleotide substitution in a bacterial carbamate hydrolase geneÖztürk, Başak / Ghequire, Maarten / Nguyen, Thi Phi Oanh / De Mot, René / Wattiez, Ruddy / Springael, Dirk et al. | 2016
- 4888
-
Comparative genomic analysis of isoproturon‐mineralizing sphingomonads reveals the isoproturon catabolic mechanismYan, Xin / Gu, Tao / Yi, Zhongquan / Huang, Junwei / Liu, Xiaowei / Zhang, Ji / Xu, Xihui / Xin, Zhihong / Hong, Qing / He, Jian et al. | 2016
- 4907
-
Microbial community diversity, structure and assembly across oxygen gradients in meromictic marine lakes, PalauMeyerhof, Matthew S. / Wilson, Jesse M. / Dawson, Michael N. / Michael Beman, J. et al. | 2016
- 4920
-
Conversion of the sensor kinase DcuS of Escherichia coli of the DcuB/DcuS sensor complex to the C4‐dicarboxylate responsive form by the transporter DcuBWörner, Sebastian / Strecker, Alexander / Monzel, Christian / Zeltner, Matthias / Witan, Julian / Ebert‐Jung, Andrea / Unden, Gottfried et al. | 2016
- 4931
-
Latitude delineates patterns of biogeography in terrestrial StreptomycesChoudoir, Mallory J. / Doroghazi, James R. / Buckley, Daniel H. et al. | 2016
- 4946
-
Stoichiometric modelling of assimilatory and dissimilatory biomass utilisation in a microbial communityHunt, Kristopher A. / Jennings, Ryan deM. / Inskeep, William P. / Carlson, Ross P. et al. | 2016
- 4961
-
Evidence of a bacterial core in the stored products pest Plodia interpunctella: the influence of different dietsMontagna, Matteo / Mereghetti, Valeria / Gargari, Giorgio / Guglielmetti, Simone / Faoro, Franco / Lozzia, Giuseppe / Locatelli, Daria / Limonta, Lidia et al. | 2016
- 4974
-
Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitatsMartino, Maria Elena / Bayjanov, Jumamurat R. / Caffrey, Brian E. / Wels, Michiel / Joncour, Pauline / Hughes, Sandrine / Gillet, Benjamin / Kleerebezem, Michiel / van Hijum, Sacha A.F.T. / Leulier, François et al. | 2016
- 4990
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Comparative metagenomics unveils functions and genome features of microbialite‐associated communities along a depth gradientSaghaï, Aurélien / Zivanovic, Yvan / Moreira, David / Benzerara, Karim / Bertolino, Paola / Ragon, Marie / Tavera, Rosaluz / López‐Archilla, Ana Isabel / López‐García, Purificación et al. | 2016
- 5005
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Identification of an iron permease, cFTR1, in cyanobacteria involved in the iron reduction/re‐oxidation uptake pathwayXu, Ning / Qiu, Guo‐Wei / Lou, Wen‐Jing / Li, Zheng‐Ke / Jiang, Hai‐Bo / Price, Neil M. / Qiu, Bao‐Sheng et al. | 2016
- 5018
-
The ICEXTD of Azoarcus sp. CIB, an integrative and conjugative element with aerobic and anaerobic catabolic propertiesZamarro, María Teresa / Martín‐Moldes, Zaira / Díaz, Eduardo et al. | 2016
- 5032
-
Toxin‐Antitoxin systems eliminate defective cells and preserve symmetry in Bacillus subtilis biofilmsBloom‐Ackermann, Zohar / Steinberg, Nitai / Rosenberg, Gili / Oppenheimer‐Shaanan, Yaara / Pollack, Dan / Ely, Shir / Storzi, Nimrod / Levy, Asaf / Kolodkin‐Gal, Ilana et al. | 2016
- 5048
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Soil compartment is a major determinant of the impact of simulated rainfall on desert microbiotaAslam, Shazia N. / Dumbrell, Alex J. / Sabir, Jamal S. / Mutwakil, Mohammed H. Z. / Baeshen, Mohammed M. N. / Abo‐Aba, Salah E. M. / Clark, Dave R. / Yates, Steven A. / Baeshen, Nabih A. / Underwood, Graham J. C. et al. | 2016
- 5063
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High turnover rates of aerobic anoxygenic phototrophs in European freshwater lakesCepáková, Zuzana / Hrouzek, Pavel / Žišková, Eva / Nuyanzina‐Boldareva, Ekaterina / Šorf, Michal / Kozlíková‐Zapomělová, Eliška / Salka, Ivette / Grossart, Hans‐Peter / Koblížek, Michal et al. | 2016
- 5072
-
Bipartite graph analyses reveal interdomain LGT involving ultrasmall prokaryotes and their divergent, membrane‐related proteinsJaffe, Alexander L. / Corel, Eduardo / Pathmanathan, Jananan Sylvestre / Lopez, Philippe / Bapteste, Eric et al. | 2016
- 5082
-
Structure and function of methanogenic microbial communities in sediments of Amazonian lakes with different water typesJi, Yang / Angel, Roey / Klose, Melanie / Claus, Peter / Marotta, Humberto / Pinho, Luana / Enrich‐Prast, Alex / Conrad, Ralf et al. | 2016
- 5101
-
Enhanced ferrihydrite dissolution by a unicellular, planktonic cyanobacterium: a biological contribution to particulate iron bioavailabilityKranzler, Chana / Kessler, Nivi / Keren, Nir / Shaked, Yeala et al. | 2016
- 5112
-
Lysozyme activity of the Ruminococcus champanellensis cellulosomeMoraïs, Sarah / Cockburn, Darrell W. / Ben‐David, Yonit / Koropatkin, Nicole M. / Martens, Eric C. / Duncan, Sylvia H. / Flint, Harry J. / Mizrahi, Itzhak / Bayer, Edward A. et al. | 2016
- 5123
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Recombinant Escherichia coli with sulfide:quinone oxidoreductase and persulfide dioxygenase rapidly oxidises sulfide to sulfite and thiosulfate via a new pathwayXin, Yufeng / Liu, Honglei / Cui, Feifei / Liu, Huaiwei / Xun, Luying et al. | 2016
- 5137
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Fungal community composition in soils subjected to long‐term chemical fertilization is most influenced by the type of organic matterSun, Ruibo / Dsouza, Melissa / Gilbert, Jack A. / Guo, Xisheng / Wang, Daozhong / Guo, Zhibin / Ni, Yingying / Chu, Haiyan et al. | 2016
- 5151
-
Microbial diversity within the Trichodesmium holobiontRouco, Mónica / Haley, Sheean T. / Dyhrman, Sonya T. et al. | 2016
- 5161
-
Bacterial microbiota associated with flower pollen is influenced by pollination type, and shows a high degree of diversity and species‐specificityAmbika Manirajan, Binoy / Ratering, Stefan / Rusch, Volker / Schwiertz, Andreas / Geissler‐Plaum, Rita / Cardinale, Massimiliano / Schnell, Sylvia et al. | 2016
- 5175
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A monotonically declining elevational pattern of bacterial diversity in freshwater lake sedimentsZeng, Jin / Zhao, Dayong / Li, Huabing / Huang, Rui / Wang, Jianjun / Wu, Qinglong L. et al. | 2016
- 5187
-
An unexplored pathway for degradation of cholate requires a 7α‐hydroxysteroid dehydratase and contributes to a broad metabolic repertoire for the utilization of bile salts in Novosphingobium sp. strain Chol11Yücel, Onur / Drees, Steffen / Jagmann, Nina / Patschkowski, Thomas / Philipp, Bodo et al. | 2016
- 5204
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Temperature moderates the infectiousness of two conspecific Symbiodinium strains isolated from the same host populationHawkins, Thomas D. / Hagemeyer, Julia. C. G. / Warner, Mark E. et al. | 2016
- 5218
-
Bacteria induce pigment formation in the basidiomycete Serpula lacrymansTauber, James P. / Schroeckh, Volker / Shelest, Ekaterina / Brakhage, Axel A. / Hoffmeister, Dirk et al. | 2016
- 5228
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Functional analysis of Escherichia coli Yad fimbriae reveals their potential role in environmental persistenceLarsonneur, Fanny / Martin, Fernando A. / Mallet, Adeline / Martinez‐Gil, Marta / Semetey, Vincent / Ghigo, Jean‐Marc / Beloin, Christophe et al. | 2016
- 5249
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Microbial eukaryote communities exhibit robust biogeographical patterns along a gradient of Patagonian and Antarctic lakesSchiaffino, M. Romina / Lara, Enrique / Fernández, Leonardo D. / Balagué, Vanessa / Singer, David / Seppey, Christophe C. W. / Massana, Ramon / Izaguirre, Irina et al. | 2016
- 5265
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Non‐specific transient mutualism between the plant parasitic nematode, Bursaphelenchus xylophilus, and the opportunistic bacterium Serratia quinivorans BXF1, a plant‐growth promoting pine endophyte with antagonistic effectsNascimento, Francisco X. / Espada, Margarida / Barbosa, Pedro / Rossi, Márcio J. / Vicente, Cláudia S. L. / Mota, Manuel et al. | 2016
- 5277
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Growth phase‐dependent control of R27 conjugation is mediated by the interplay between the plasmid‐encoded regulatory circuit TrhR/TrhY‐HtdA and the cAMP regulonGibert, Marta / Paytubi, Sonia / Beltrán, Sergi / Juárez, Antonio / Balsalobre, Carlos / Madrid, Cristina et al. | 2016
- 5288
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Intensive cryptic microbial iron cycling in the low iron water column of the meromictic Lake CadagnoBerg, Jasmine S. / Michellod, Dolma / Pjevac, Petra / Martinez‐Perez, Clara / Buckner, Caroline R. T. / Hach, Philipp F. / Schubert, Carsten J. / Milucka, Jana / Kuypers, Marcel M. M. et al. | 2016
- 5303
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Web Alert: Drugs from Marine Microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiologyWackett, Lawrence P. et al. | 2016
- 5305
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Corrigendum| 2016