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  1. Detection of Intramolecular Tunnels Connecting Sequence of Sites in Protein Structures

    Strnad, Ondrej / Kozlikova, Barbora / Sochor, Jiri | Springer Verlag | 2014

  2. Nanomatrix: Scalable Construction of Crowded Biological Environments

    Free access
    Alharbi, Ruwayda / Strnad, Ondřej / Klein, Tobias et al. | ArXiv | 2022

  3. Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations

    Kozlíková, Barbora / Jurcík, Adam / Byka, Jan et al. | Eurographics | 2014

  4. Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations

    Kozlíková, Barbora / Jurcík, Adam / ByKa, Jan et al. | DataCite | 2014

  5. VOICE: Visual Oracle for Interaction, Conversation, and Explanation

    Free access
    Jia, Donggang / Irger, Alexandra / Strnad, Ondrej et al. | ArXiv | 2023

  6. SynopSet: Multiscale Visual Abstraction Set for Explanatory Analysis of DNA Nanotechnology Simulations

    Free access
    Luo, Deng / Kouyoumdjian, Alexandre / Strnad, Ondřej et al. | ArXiv | 2022

  7. Volume Conductor: Interactive Visibility Management for Crowded Volumes

    Free access
    Lesar, Žiga / Alharbi, Ruwayda / Bohak, Ciril et al. | ArXiv | 2022

  8. Molecumentary: Scalable Narrated Documentaries Using Molecular Visualization

    Free access
    Kouřil, David / Strnad, Ondřej / Mindek, Peter et al. | ArXiv | 2020

  9. Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization

    Free access
    Kouril, David / Strnad, Ondrej / Mindek, Peter et al. | IEEE | 2023

  10. Finding Nano-\"Otzi: Semi-Supervised Volume Visualization for Cryo-Electron Tomography

    Free access
    Nguyen, Ngan / Bohak, Ciril / Engel, Dominik et al. | ArXiv | 2021

  11. Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments

    Free access
    Alharbi, Ruwayda / Strnad, Ondrej / Luidolt, Laura R. et al. | IEEE | 2023

  12. Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models

    Free access
    Nguyen, Ngan / Strnad, Ondrej / Klein, Tobias et al. | ArXiv | 2020

  13. Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models

    Free access
    Nguyen, Ngan / Strnad, Ondrej / Klein, Tobias et al. | IEEE | 2021

  14. CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures

    Kozlikova, Barbora / Sebestova, Eva / Sustr, Vilem et al. | Oxford University Press | 2014
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