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1
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Cooperative Assembly Systems
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1
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Improving Efficiency of 3-SAT-Solving Tile Systems
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13
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Optimizing Tile Concentrations to Minimize Errors and Time for DNA Tile Self-assembly Systems
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21
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The Computer Science of Molecular Programming
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22
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An Autonomous DNA Nanodevice Captures pH Maps of Living Cells in Culture and <Emphasis Type="Italic">in Vivo</Emphasis>
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25
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Scalable, Time-Responsive, Digital, Energy-Efficient Molecular Circuits Using DNA Strand Displacement
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32
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Cooperation in an All-RNA Network
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33
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Designer DNA Architectures for Bionanotechnology
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34
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An Improved DNA-Sticker Addition Algorithm and Its Application to Logarithmic Arithmetic
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37
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Negative Interactions in Irreversible Self-assembly
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49
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Graph-Theoretic Formalization of Hybridization in DNA Sticker Complexes
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49
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Search and Validation of Short Genome-Wide Biomarkers for Bacterial Biological Phylogenies
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59
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High-Fidelity DNA Hybridization Using Programmable Molecular DNA Devices
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64
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Localized Hybridization Circuits
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71
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Synthesizing Minimal Tile Sets for Patterned DNA Self-assembly
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83
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Operation of a DNA-Based Autocatalytic Network in Serum
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84
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Less Haste, Less Waste: On Recycling and Its Limits in Strand Displacement Systems
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89
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Triangular Tile Self-assembly Systems
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100
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One-Dimensional Staged Self-assembly
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100
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Randomized Self Assembly of Rectangular Nano Structures
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112
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Design of a Functional Nanomaterial with Recognition Ability for Constructing Light-Driven Nanodevices
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115
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Computing Maximal Kleene Closures That Are Embeddable in a Given Constrained DNA Language
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123
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Efficient Turing-Universal Computation with DNA Polymers
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130
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Modelling, Simulating and Verifying Turing-Powerful Strand Displacement Systems
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141
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Reversible Transition of Photonic DNA Automaton Using Hairpin-DNA Responding to a Single Kind of Photonic Signal
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145
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Synthesizing Small and Reliable Tile Sets for Patterned DNA Self-assembly
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147
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Simple Evolution of Complex Crystal Species
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160
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Multivalent Random Walkers — A Model for Deoxyribozyme Walkers
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162
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Towards Domain-Based Sequence Design for DNA Strand Displacement Reactions
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175
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Exact Shapes and Turing Universality at Temperature 1 with a Single Negative Glue
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176
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DNA-Based Fixed Gain Amplifiers and Linear Classifier Circuits
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190
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Autonomous Resolution Based on DNA Strand Displacement
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204
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Multiple Molecular Spiders with a Single Localized Source—The One-Dimensional Case
