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Bioinformatics and Biomedical Engineering [2019]

1
Developing a DEVS-JAVA Model to Simulate and Pre-test Changes to Emergency Care Delivery in a Safe and Efficient Manner
2
Concept Bag: A New Method for Computing Concept Similarity in Biomedical Data
3
A Reliable Method to Remove Batch Effects Maintaining Group Differences in Lymphoma Methylation Case Study
4
Predict Breast Tumor Response to Chemotherapy Using a 3D Deep Learning Architecture Applied to DCE-MRI Data
5
Data Fusion for Improving Sleep Apnoea Detection from Single-Lead ECG Derived Respiration
6
Instrumented Shoes for 3D GRF Analysis and Characterization of Human Gait
7
Novel Four Stages Classification of Breast Cancer Using Infrared Thermal Imaging and a Deep Learning Model
8
Comparison of Numerical and Laboratory Experiment Examining Deformation of Red Blood Cell
9
Levenberg-Marquardt Variants in Chrominance-Based Skin Tissue Detection
10
A Mini-review of Biomedical Infrared Thermography (B-IRT)
11
Mathematical Modeling and Docking of Medicinal Plants and Synthetic Drugs to Determine Their Effects on Abnormal Expression of Cholinesterase and Acetyl Cholinesterase Proteins in Alzheimer
12
Definition of Organic Processes via Digital Monitoring Systems
13
Detection of Pools of Bacteria with Public Health Importance in Wastewater Effluent from a Municipality in South Africa Using Next Generation Sequencing and Metagenomics Analysis
14
Web-Based Application for Accurately Classifying Cancer Type from Microarray Gene Expression Data Using a Support Vector Machine (SVM) Learning Algorithm
15
Associating Protein Domains with Biological Functions: A Tripartite Network Approach
16
Interaction of ZIKV NS5 and STAT2 Explored by Molecular Modeling, Docking, and Simulations Studies
17
Entropy-Based Detection of Genetic Markers for Bacteria Genotyping
18
Clustering of <italic>Klebsiella</italic> Strains Based on Variability in Sequencing Data
19
Addition of Pathway-Based Information to Improve Predictions in Transcriptomics
20
Common Gene Regulatory Network for Anxiety Disorder Using Cytoscape: Detection and Analysis
21
Insight About Nonlinear Dimensionality Reduction Methods Applied to Protein Molecular Dynamics
22
HIV Drug Resistance Prediction with Categorical Kernel Functions
23
Deciphering General Characteristics of Residues Constituting Allosteric Communication Paths
24
Feature (Gene) Selection in Linear Homogeneous Cuts
25
DNA Sequence Alignment Method Based on Trilateration
26
Convolutional Neural Networks for Red Blood Cell Trajectory Prediction in Simulation of Blood Flow
27
Platform for Adaptive Knowledge Discovery and Decision Making Based on Big Genomics Data Analytics
28
Simulation Approaches to Stretching of Red Blood Cells
29
Describing Sequential Association Patterns from Longitudinal Microarray Data Sets in Humans
30
Low Resolution Electroencephalographic-Signals-Driven Semantic Retrieval: Preliminary Results
31
A Simpler Command of Motor Using BCI
32
A Biomechanical Model Implementation for Upper-Limbs Rehabilitation Monitoring Using IMUs
33
Non-generalized Analysis of the Multimodal Signals for Emotion Recognition: Preliminary Results
34
Relations Between Maximal Half Squat Strength and Bone Variables in a Group of Young Overweight Men
35
Brain Hematoma Segmentation Using Active Learning and an Active Contour Model
36
DYNLO: Enhancing Non-linear Regularized State Observer Brain Mapping Technique by Parameter Estimation with Extended Kalman Filter
37
Analysis of the Behavior of the Red Blood Cell Model in a Tapered Microchannel
38
Radiofrequency Ablation for Treating Chronic Pain of Bones: Effects of Nerve Locations
39
Visualization and Cognitive Graphics in Medical Scientific Research
40
Detection of Static Objects in an Image Based on Texture Analysis
41
Artefacts Recognition and Elimination in Video Sequences with Ciliary Respiratory Epithelium
42
Cross Modality Microscopy Segmentation via Adversarial Adaptation
43
Assessment of Pain-Induced Changes in Cerebral Microcirculation by Imaging Photoplethysmography
44
Detection of Subclinical Keratoconus Using Biometric Parameters
45
A Computer Based Blastomere Identification and Evaluation Method for Day 2 Embryos During IVF/ICSI Treatments
46
Detection of Breast Cancer Using Infrared Thermography and Deep Neural Networks
47
Development of an ECG Smart Jersey Based on Next Generation Computing for Automated Detection of Heart Defects Among Athletes
48
Analysis of Finger Thermoregulation by Using Signal Processing Techniques
49
Comparative Study of Feature Selection Methods for Medical Full Text Classification
50
Estimation of Lung Properties Using ANN-Based Inverse Modeling of Spirometric Data
51
Model of the Mouth Pressure Signal During Pauses in Total Liquid Ventilation
3
A Coarse-Grained Representation for Discretizable Distance Geometry with Interval Data
14
Fragment-Based Drug Design to Discover Novel Inhibitor of Dipeptidyl Peptidase-4 (DPP-4) as a Potential Drug for Type 2 Diabetes Therapy
25
Discovery of Novel Alpha-Amylase Inhibitors for Type II Diabetes Mellitus Through the Fragment-Based Drug Design
36
Compression of Nanopore FASTQ Files
48
<Emphasis Type="Italic">De novo</Emphasis> Transcriptome Assembly of <Emphasis Type="Italic">Solea senegalensis</Emphasis> v5.0 Using TransFlow
60
Deciphering the Role of PKC in Calpain-CAST System Through Formal Modeling Approach
72
The Application of Machine Learning Algorithms to Diagnose CKD Stages and Identify Critical Metabolites Features
84
Expression Change Correlations Between Transposons and Their Adjacent Genes in Lung Cancers Reveal a Genomic Location Dependence and Highlights Cancer-Significant Genes
93
Signal Processing Based CNV Detection in Bacterial Genomes
105
Dependency Model for Visible Aquaphotomics
116
Image Based Individual Identification of Sumatra Barb (<Emphasis Type="Italic">Puntigrus Tetrazona</Emphasis>)
120
Alignment of Sequences Allowing for Non-overlapping Unbalanced Translocations of Adjacent Factors
132
Probability in HPLC-MS Metabolomics
142
Pipeline for Electron Microscopy Images Processing
154
A Greedy Algorithm for Detecting Mutually Exclusive Patterns in Cancer Mutation Data
166
Qualitative Comparison of Selected Indel Detection Methods for RNA-Seq Data
178
Structural and Functional Features of Glutathione Reductase Transcripts from Olive (<Emphasis Type="Italic">Olea europaea</Emphasis> L.) Seeds
195
Prediction of Thermophilic Proteins Using Voting Algorithm
204
Classifying Breast Cancer Histopathological Images Using a Robust Artificial Neural Network Architecture
216
Spatial Attention Lesion Detection on Automated Breast Ultrasound
228
Essential Protein Detection from Protein-Protein Interaction Networks Using Immune Algorithm
240
Integrating Multiple Datasets to Discover Stage-Specific Cancer Related Genes and Stage-Specific Pathways
251
Integrated Detection of Copy Number Variation Based on the Assembly of NGS and 3GS Data
261
Protein Remote Homology Detection Based on Profiles
271
Reads in NGS Are Distributed over a Sequence Very Inhomogeneously
283
Differential Expression Analysis of ZIKV Infected Human RNA Sequence Reveals Potential Genetic Biomarkers
295
Identification of Immunoglobulin Gene Usage in Immune Repertoires Sequenced by Nanopore Technology
307
Flexible and Efficient Algorithms for Abelian Matching in Genome Sequence
319
Analysis of Gene Regulatory Networks Inferred from ChIP-seq Data
335
Function vs. Taxonomy: The Case of Fungi Mitochondria ATP Synthase Genes
346
Non-Coding Regions of Chloroplast Genomes Exhibit a Structuredness of Five Types
356
Characteristics of Protein Fold Space Exhibits Close Dependence on Domain Usage
370
Triplet Frequencies Implementation in Total Transcriptome Analysis
379
A Hierarchical and Scalable Strategy for Protein Structural Classification
391
Protein Structural Signatures Revisited: Geometric Linearity of Main Chains are More Relevant to Classification Performance than Packing of Residues
405
Positioning Method for Arterial Blood Pressure Monitoring Wearable Sensor
415
Study of the Detection of Falls Using the SVM Algorithm, Different Datasets of Movements and ANOVA
429
Influence of Illuminance on Sleep Onset Latency in IoT Based Lighting System Environment
441
Efficient Online Laplacian Eigenmap Computation for Dimensionality Reduction in Molecular Phylogeny via Optimisation on the Sphere
453
PROcket, an Efficient Algorithm to Predict Protein Ligand Binding Site
462
Gene Expression High-Dimensional Clustering Towards a Novel, Robust, Clinically Relevant and Highly Compact Cancer Signature
477
When Mathematics Outsmarts Cancer
486
Influence of the Stochasticity in the Model on the Certain Drugs Pharmacodynamics
498
Graph Model for the Identification of Multi-target Drug Information for Culinary Herbs
513
On Identifying Candidates for Drug Repurposing for the Treatment of Ulcerative Colitis using Gene Expression Data
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