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Genomic Selection in Animals [2016]

1
Historical Overview
7
Types of Current Genetic Markers and Genotyping Methodologies
11
Advanced Animal Breeding Programs Prior to Genomic Selection
17
Economic Evaluation of Genetic Breeding Programs
21
Least Squares, Maximum Likelihood, and Bayesian Parameter Estimation
31
Trait‐Based Genetic Evaluation
43
Maximum Likelihood and Bayesian Estimation of QTL Parameters with Random Effects Included in the Model
51
Maximum Likelihood, Restricted Maximum Likelihood, and Bayesian Estimation for Mixed Models
59
Distribution of Genetic Effects, Theory, and Results
69
The Multiple Comparison Problem
81
Linkage Mapping of QTL
89
Linkage Disequilibrium Mapping of QTL
95
Marker‐Assisted Selection
103
Genetic Evaluation Based on Dense Marker Maps
111
Genetic Evaluation Based on Analysis of Genetic Evaluations or Daughter‐Yield Evaluations
119
Genomic Evaluation Based on Analysis of Production Records
125
Validation of Methods for Genomic Estimated Breeding Values
133
By‐Products of Genomic Analysis
139
Imputation of Missing Genotypes
145
Detection and Validation of Quantitative Trait Nucleotides
153
Future Directions and Conclusions
159
References
171
Index
i
Front Matter
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