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1
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Riskoweb: Web-Based Genetic Profiling to Complex Disease Using Genome-Wide SNP Markers
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9
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MC64: A Web Platform to Test Bioinformatics Algorithms in a Many-Core Architecture
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17
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Integrating Medical Patient Data with Family Trees to Improve the Quality of Information
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23
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Peptidase Detection and Classification Using Enhanced Kernel Methods with Feature Selection
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31
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An Image Processing Application for Quantification of Protein Aggregates in <Emphasis Type="Italic">Caenorhabditis Elegans</Emphasis>
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39
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Workflows with Model Selection: A Multilocus Approach to Phylogenetic Analysis
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49
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Baiacu: A Tool for the Visual Analysis of the <Emphasis Type="Italic">Saccharomyces Cerevisiae</Emphasis> Regulatory Network
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57
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BBMS<Superscript> + + </Superscript> – Basic Bioinformatics Meta-searcher
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63
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Effective Parallelization of Non-bonded Interactions Kernel for Virtual Screening on GPUs
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71
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Tracking B Cells from Two-Photon Microscopy Images Using Sequential Monte Carlo
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79
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Experiments on Computer Assisted Optimization of the <Emphasis Type="Italic">Escherichia</Emphasis>
<Emphasis Type="Italic">Coli</Emphasis> Fermentation Process Using Optferm
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83
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An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies
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87
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Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments
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93
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EPIQuest: A Multiuser and Multiproject Web Tool to Build Online Forms for Biomedical Studies
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99
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Building Proteomics Applications with the AIBench Application Framework
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109
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Neurohand Solving the Inverse Cinematic of an Anthropomorphic Arm
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117
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An Enhancement of the Usage of the Poincare Index for the Detection and Classification of Characteristic Points in Dactylograms
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125
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Modelling of Tirapazamine Effects on Solid Tumour Morphology
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133
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MOGA-Based Multi-drug Optimisation for Cancer Chemotherapy
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141
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Multi-drug Infusion Control Using Model Reference Adaptive Algorithm
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149
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Fast and Accurate Genome Anchoring Using Fuzzy Hash Maps
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157
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A Parallel Niched Pareto Evolutionary Algorithm for Multiple Sequence Alignment
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167
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Phylogenetic Analysis Using an SMV Tool
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175
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An Efficient Motif Search Algorithm Based on a Minimal Forbidden Patterns Approach
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183
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Emerging Methodologies in Multiple Sequence Alignment Using High Throughput Data
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191
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DNA Sequence Search Using Content-Based Image Search Approach
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201
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Integrative Analysis of the Regulatory Region of the FGFR3 Oncogene
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205
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Distances between Dinucleotides in the Human Genome
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213
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Compressing the Human Genome Using Exclusively Markov Models
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221
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Highlighting Differential Gene Expression between Two Condition Microarrays through Multidimensional Scaling Comparison of <Emphasis Type="Italic">Lesihmania</Emphasis>
<Emphasis Type="Italic">Infantum</Emphasis> Genomic Data Similarity Matrices
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229
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Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple Sclerosis
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241
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A Simulation Study on the Impact of Strong Dependence in High-Dimensional Multiple-Testing I: The Case without Effects
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247
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Bioinformatics as a Tool to Help Characterise <Emphasis Type="Italic">Perkinsus Olseni</Emphasis> Up-Regulated Genes in Response to Its Host
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255
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Hybridization Dynamics Compensation in Microarray Experiments
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263
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Identification of Peptides with Deviating Regulation Factors Using a Robust Clustering Scheme
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271
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Prediction of Protein Distance Maps by Assembling Fragments According to Physicochemical Similarities
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279
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Residue-Residue Contact Prediction Based on Evolutionary Computation
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285
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NcPred for Accurate Nuclear Protein Prediction Using <Emphasis Type="Italic">n-mer</Emphasis> Statistics with Various Classification Algorithms
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293
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Relating Formalisms for the Qualitative Modelling of Regulatory Networks
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303
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Interpreting the Regulatory Interplay in <Emphasis Type="Italic">E. coli</Emphasis> Metabolic Pathways
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313
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A Systematic Modeling Approach to Elucidate the Triggering of the Stringent Response in Recombinant <Emphasis Type="Italic">E. coli</Emphasis> Systems
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321
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Modeling Cellular Signaling Systems: An Abstraction-Refinement Approach
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329
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A Study on the Robustness of Strain Optimization Algorithms
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337
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Assessing the Suitability of MeSH Ontology for Classifying Medline Documents
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345
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Assessing the Impact of Class-Imbalanced Data for Classifying Relevant/Irrelevant Medline Documents
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355
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Assessing the Effect of 2D Fingerprint Filtering on ILP-Based Structure-Activity Relationships Toxicity Studies in Drug Design
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365
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Using Dictionaries for Biomedical Text Classification
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373
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Using Machine Learning Techniques and Genomic/Proteomic Information from Known Databases for PPI Prediction
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381
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Prioritizing Literature Search Results Using a Training Set of Classified Documents
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389
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Improving Reproducibility on Tree Based Multimarker Methods: TreeDTh