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5th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2011) [2011]

1
Riskoweb: Web-Based Genetic Profiling to Complex Disease Using Genome-Wide SNP Markers
9
MC64: A Web Platform to Test Bioinformatics Algorithms in a Many-Core Architecture
17
Integrating Medical Patient Data with Family Trees to Improve the Quality of Information
23
Peptidase Detection and Classification Using Enhanced Kernel Methods with Feature Selection
31
An Image Processing Application for Quantification of Protein Aggregates in <Emphasis Type="Italic">Caenorhabditis Elegans</Emphasis>
39
Workflows with Model Selection: A Multilocus Approach to Phylogenetic Analysis
49
Baiacu: A Tool for the Visual Analysis of the <Emphasis Type="Italic">Saccharomyces Cerevisiae</Emphasis> Regulatory Network
57
BBMS<Superscript> + + </Superscript> – Basic Bioinformatics Meta-searcher
63
Effective Parallelization of Non-bonded Interactions Kernel for Virtual Screening on GPUs
71
Tracking B Cells from Two-Photon Microscopy Images Using Sequential Monte Carlo
79
Experiments on Computer Assisted Optimization of the <Emphasis Type="Italic">Escherichia</Emphasis> <Emphasis Type="Italic">Coli</Emphasis> Fermentation Process Using Optferm
83
An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies
87
Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments
93
EPIQuest: A Multiuser and Multiproject Web Tool to Build Online Forms for Biomedical Studies
99
Building Proteomics Applications with the AIBench Application Framework
109
Neurohand Solving the Inverse Cinematic of an Anthropomorphic Arm
117
An Enhancement of the Usage of the Poincare Index for the Detection and Classification of Characteristic Points in Dactylograms
125
Modelling of Tirapazamine Effects on Solid Tumour Morphology
133
MOGA-Based Multi-drug Optimisation for Cancer Chemotherapy
141
Multi-drug Infusion Control Using Model Reference Adaptive Algorithm
149
Fast and Accurate Genome Anchoring Using Fuzzy Hash Maps
157
A Parallel Niched Pareto Evolutionary Algorithm for Multiple Sequence Alignment
167
Phylogenetic Analysis Using an SMV Tool
175
An Efficient Motif Search Algorithm Based on a Minimal Forbidden Patterns Approach
183
Emerging Methodologies in Multiple Sequence Alignment Using High Throughput Data
191
DNA Sequence Search Using Content-Based Image Search Approach
201
Integrative Analysis of the Regulatory Region of the FGFR3 Oncogene
205
Distances between Dinucleotides in the Human Genome
213
Compressing the Human Genome Using Exclusively Markov Models
221
Highlighting Differential Gene Expression between Two Condition Microarrays through Multidimensional Scaling Comparison of <Emphasis Type="Italic">Lesihmania</Emphasis> <Emphasis Type="Italic">Infantum</Emphasis> Genomic Data Similarity Matrices
229
Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple Sclerosis
241
A Simulation Study on the Impact of Strong Dependence in High-Dimensional Multiple-Testing I: The Case without Effects
247
Bioinformatics as a Tool to Help Characterise <Emphasis Type="Italic">Perkinsus Olseni</Emphasis> Up-Regulated Genes in Response to Its Host
255
Hybridization Dynamics Compensation in Microarray Experiments
263
Identification of Peptides with Deviating Regulation Factors Using a Robust Clustering Scheme
271
Prediction of Protein Distance Maps by Assembling Fragments According to Physicochemical Similarities
279
Residue-Residue Contact Prediction Based on Evolutionary Computation
285
NcPred for Accurate Nuclear Protein Prediction Using <Emphasis Type="Italic">n-mer</Emphasis> Statistics with Various Classification Algorithms
293
Relating Formalisms for the Qualitative Modelling of Regulatory Networks
303
Interpreting the Regulatory Interplay in <Emphasis Type="Italic">E. coli</Emphasis> Metabolic Pathways
313
A Systematic Modeling Approach to Elucidate the Triggering of the Stringent Response in Recombinant <Emphasis Type="Italic">E. coli</Emphasis> Systems
321
Modeling Cellular Signaling Systems: An Abstraction-Refinement Approach
329
A Study on the Robustness of Strain Optimization Algorithms
337
Assessing the Suitability of MeSH Ontology for Classifying Medline Documents
345
Assessing the Impact of Class-Imbalanced Data for Classifying Relevant/Irrelevant Medline Documents
355
Assessing the Effect of 2D Fingerprint Filtering on ILP-Based Structure-Activity Relationships Toxicity Studies in Drug Design
365
Using Dictionaries for Biomedical Text Classification
373
Using Machine Learning Techniques and Genomic/Proteomic Information from Known Databases for PPI Prediction
381
Prioritizing Literature Search Results Using a Training Set of Classified Documents
389
Improving Reproducibility on Tree Based Multimarker Methods: TreeDTh
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