Web-based toolkits for topology prediction of transmembrane helical proteins, fold recognition, structure and binding scoring, folding-kinetics analysis and comparative analysis of domain combinations (Englisch)
- Neue Suche nach: Zhou, H.
- Neue Suche nach: Zhang, C.
- Neue Suche nach: Liu, S.
- Neue Suche nach: Zhou, Y.
- Neue Suche nach: Zhou, H.
- Neue Suche nach: Zhang, C.
- Neue Suche nach: Liu, S.
- Neue Suche nach: Zhou, Y.
In:
NUCLEIC ACIDS RESEARCH
;
33
;
W193-W197
;
2005
-
ISSN:
- Aufsatz (Zeitschrift) / Print
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Titel:Web-based toolkits for topology prediction of transmembrane helical proteins, fold recognition, structure and binding scoring, folding-kinetics analysis and comparative analysis of domain combinations
-
Beteiligte:
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Erschienen in:NUCLEIC ACIDS RESEARCH ; 33 ; W193-W197
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Verlag:
- Neue Suche nach: Oxford University Press
-
Erscheinungsdatum:01.01.2005
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Format / Umfang:W193-W197
-
ISSN:
-
Medientyp:Aufsatz (Zeitschrift)
-
Format:Print
-
Sprache:Englisch
- Neue Suche nach: 574.8732 / 574
- Weitere Informationen zu Dewey Decimal Classification
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Klassifikation:
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Datenquelle:
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Amino-functionalized DNA: the properties of C5-amino-alkyl substituted 2prime-deoxyuridines and their application in DNA triplex formationBrazier, J. A. / Shibata, T. / Townsley, J. / Taylor, B. F. / Frary, E. / Williams, N. H. / Williams, D. M. et al. | 2005
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Amino-functionalized DNA: the properties of C5-amino-alkyl substituted 2'-deoxyuridines and their application in DNA triplex formationBrazier, John A. et al. | 2005
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- 1399
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Cadmium inhibits mismatch repair by blocking the ATPase activity of the MSH2-MSH6 complexBanerjee, Sreeparna et al. | 2005
- 1421
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Rapid creation of BAC-based human artifical chromosome vectors by transposition with synthetic alpha-satellite arraysBasu, Joydeep et al. | 2005
- 1423
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A critical role for the Sp1-binding sites in the transforming growth factor-b-mediated inhibition of lipoprotein lipase gene expression in macrophagesIrvine, Scott A. et al. | 2005
- 1435
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NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequenceDown, Thomas A. et al. | 2005
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Expression of complementary RNA from chloroplast transgenes affects editing efficiency of transgene and endogenous chloroplast transcriptsHegeman, Carla E. et al. | 2005
- 1465
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Conformational flexibility revealed by the crystal structure of a crenarchaeal RadAAriza, Antonio et al. | 2005
- 1474
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Characterizing the function and structural organization of the 5' tRNA-like motif within the hepatitis C virus quasispeciesPiron, Maria et al. | 2005
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Characterizing the function and structural organization of the 5prime tRNA-like motif within the hepatitis C virus quasispeciesPiron, M. / Beguiristain, N. / Nadal, A. / Martinez-Salas, E. / Gomez, J. et al. | 2005
- 1503
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Developmentally regulated instability of the GPI-PLC mRNA is dependent on a short-lived protein factorWebb, Helena et al. | 2005
- 1513
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Identification of the 'NORE' (N-Oct-3 responsive element), a novel structural motif and composite elementAlazard, Robert et al. | 2005
- 1524
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Dimeric configuration of SeqA protein bound to a pair of hemi-methylated GATC sequencesKang, Sukhyun et al. | 2005
- 1532
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Hybridization properties and enzymatic replication of oligonucleotides containing the photocleavable 7-nitroindole base analogCrey-Desbiolles, Caroline et al. | 2005
- 1544
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Integration of text- and data-mining using ontologies successfully selects disease gene candidatesTiffin, Nicki et al. | 2005
- 1553
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Characterization of the frameshift signal of Edr, a mammalian example of programmed -1 ribosomal frameshiftingManktelow, Emily et al. | 2005
- 1564
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The post-transcriptional gene silencing machinery functions independently of DNA methylation to repress a LINE1-like retrotransposon in Neurospora crassaNolan, Tony et al. | 2005
- 1574
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Gene conversion and deletion frequencies during double-strand break repair in human cells are controlled by the distance between direct repeatsSchildkraut, Ezra et al. | 2005
- 1581
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Differential role of RB in response to UV and IR damageBosco, Emily E. et al. | 2005
- 1593
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Generation of 5-(2prime-deoxycytidyl)methyl radical and the formation of intrastrand cross-link lesions in oligodeoxyribonucleotidesZhang, Q. / Wang, Y. et al. | 2005
- 1593
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Generation of 5-(2'-deoxycytidyl)methyl radical and the formation of intrastrand cross-link lesions in oligodeoxyribonucleotidesZhang, Qibin et al. | 2005
- 1604
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Structural roles of CTG repeats in slippage expansion during DNA replicationChi, Lai Man et al. | 2005
- 1618
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Chemical engineering of the peptidyl transferase center reveals an important role of the 2'-hydroxyl group of A2451Erlacher, Matthias D. et al. | 2005
- 1618
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Chemical engineering of the peptidyl transferase center reveals an important role of the 2prime-hydroxyl group of A2451Erlacher, M. D. / Lang, K. / Shankaran, N. / Wotzel, B. / Huttenhofer, A. / Micura, R. / Mankin, A. S. / Polacek, N. et al. | 2005
- 1628
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Two modes of microsatellite instability in human cancer: differential connection of defective DNA mismatch repair to dinucleotide repeat instabilityOda, Shinya et al. | 2005
- 1637
-
The effect of the 2-amino group of 7,8-dihydro-8-oxo-2prime-deoxyguanosine on translesion synthesis and duplex stabilityOka, N. / Greenberg, M. M. et al. | 2005
- 1637
-
The effect of the 2-amino group of 7,8-dihydro-8-oxo-2'-deoxyguanosine on translesion synthesis and duplex stabilityOka, Natsuhisa et al. | 2005
- 1644
-
Conversion of DNA methyltransferases into azidonucleosidyl transferases via synthetic cofactorsComstock, Lindsay R. et al. | 2005
- 1653
-
Modification at position 9 with 1-methyladenosine is crucial for structure and function of nematode mitochondrial tRNAs lacking the entire T-armSakurai, Masayuki et al. | 2005
- 1662
-
Single-stranded DNA-binding protein of Deinococcus radiodurans: a biophysical characterizationWitte, Gregor et al. | 2005
- 1671
-
A systematic analysis of the silencing effects of an active siRNA at all single-nucleotide mismatched target sitesDu, Quan et al. | 2005
- 1678
-
Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhBAfonyushkin, Taras et al. | 2005
- 1690
-
The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogenChiu, Cheng-Hsun et al. | 2005
- 1699
-
Formation of linear inverted repeat amplicons following targeting of an essential gene in LeishmaniaGenest, Paul-André et al. | 2005
- 1710
-
Sequence variation in G-protein-coupled receptors: analysis of single nucleotide polymorphismsBalasubramanian, Suganthi et al. | 2005
- 1722
-
Transcriptional regulation of two stage-specifically expressed genes in the protozoan parasite Toxoplasma gondiiKibe, Michael K. et al. | 2005
- 1737
-
siRNAdb: a database of siRNA sequencesChalk, Alistair M. et al. | 2005
- 1741
-
Conservation versus parallel gains in intron evolutionSverdlov, Alexander V. et al. | 2005
- 1749
-
Solution structure of a modified 2',5'-linked RNA hairpin involved in an equilibrium with duplexPlevnik, Miha et al. | 2005
- 1749
-
Solution structure of a modified 2prime,5prime-linked RNA hairpin involved in an equilibrium with duplexPlevnik, M. / Gdaniec, Z. / Plavec, J. et al. | 2005
- 1760
-
On the DNA cleavage mechanism of Type I restriction enzymesJindrova, Eva et al. | 2005
- 1767
-
Post-synthetic and site-specific modification of endocyclic nitrogen atoms of purines in DNA and its potential for biological and structural studiesNarukulla, Raman et al. | 2005
- 1779
-
Influence of the p-p interaction on the hydrogen bonding capacity of stacked DNA-RNA basesMignon, Pierre et al. | 2005
- 1790
-
Polyamines preferentially interact with bent adenine tracts in double-stranded DNALindemose, Søren et al. | 2005
- 1804
-
The archaeal eIF2 homologue: functional properties of an ancient translation initiation factorPedullà, Nadia et al. | 2005
- 1813
-
Dynamic relocalization of hOGG1 during the cell cycle is disrupted in cells harbouring the hOGG1-Cys326 polymorphic variantLuna, Luisa et al. | 2005
- 1825
-
Torsional restraint: a new twist on frameshifting pseudoknotsPlant, Ewan P. et al. | 2005
- 1834
-
A computational study of off-target effects of RNA interferenceQiu, Shibin et al. | 2005
- 1848
-
Srs2 and RecQ homologs cooperate in mei-3-mediated homologous recombination repair of Neurospora crassaSuzuki, Keiichiro et al. | 2005
- 1859
-
The liver-enriched transcription factor CREB-H is a growth suppressor protein underexpressed in hepatocellular carcinomaChin, King-Tung et al. | 2005
- 1874
-
Practical lessons from protein structure predictionGinalski, Krzysztof et al. | 2005
- 1892
-
Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspIYang, Zhe et al. | 2005
- 1902
-
tRNA-linked molecular beacons for imaging mRNAs in the cytoplasm of living cellsMhlanga, Musa M. et al. | 2005
- 1913
-
Mutational comparison of the single-domained APOBEC3C and double-domained APOBEC3F-G anti-retroviral cytidine deaminases provides insight into their DNA target site specificitiesLanglois, Marc-André et al. | 2005
- 1924
-
Regulation of Id2 expression by CCAAT-enhancer binding protein bKaraya, Kazuhiro et al. | 2005
- 1935
-
Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genesCastelo, Robert et al. | 2005
- 1940
-
Tandem oligonucleotide synthesis using linker phosphoramiditesPon, Richard T. et al. | 2005
- 1949
-
Experimental RNomics in Aquifex aeolicus: identification of small non-coding RNAs and the putative 6S RNA homologWillkomm, Dagmar K. et al. | 2005
- 1961
-
Site-specific incorporation of N-(deoxyguanosin-8-yl)-2-acetylaminofluorene (dG-AAF) into oligonucleotides using modified 'ultra-mild' DNA synthesisGillet, Ludovic C.J. et al. | 2005
- 1970
-
Pre-organized structure of viral DNA at the binding-processing site of HIV-1 integraseRenisio, Jean-Guillaume et al. | 2005
- 1982
-
Cyclic changes in the affinity of protein-DNA interactions drive the progression and regulate the outcome of the Tn10 transposition reactionLiu, Danxu et al. | 2005
- 1993
-
Functional roles of 3'-terminal structures of template RNA during in vivo retrotransposition of non-LTR retrotransposon, R1BmAnzai, Tomohiro et al. | 2005
- 1993
-
Functional roles of 3prime-terminal structures of template RNA during in vivo retrotransposition of non-LTR retrotransposon, R1BmAnzai, T. / Osanai, M. / Hamada, M. / Fujiwara, H. et al. | 2005
- 2003
-
A novel cGUUAg tetraloop structure with a conserved yYNMGg-type backbone conformation from cloverleaf 1 of bovine enterovirus 1 RNAIhle, Yvonne et al. | 2005
- 2012
-
Substrate discrimination in RNase P RNA-mediated cleavage: importance of the structural environment of the RNase P cleavage siteKikovska, Ema et al. | 2005
- 2022
-
Vertebrate telomere repeat DNAs favor external loop propeller quadruplex structures in the presence of high concentrations of potassiumRujan, Iulian N. et al. | 2005
- 2032
-
Retropseudogenes derived from the human Ro-SS-A autoantigen-associated hY RNAsPerreault, Jonathan et al. | 2005
- 2042
-
Site-specific reverse splicing of a HEG-containing group I intron in ribosomal RNABirgisdottir, Åsa B. et al. | 2005
- 2052
-
Argonaute protein PIWI controls mobilization of retrotransposons in the Drosophila male germlineKalmykova, Alla I. et al. | 2005
- 2060
-
Efficient isolation of targeted Caenorhabditis elegans deletion strains using highly thermostable restriction endonucleases and PCRWei, Aguan et al. | 2005
- 2061
-
NMR chemical shift and relaxation measurements provide evidence for the coupled folding and binding of the p53 transactivation domainVise, Pamela D. et al. | 2005
- 2078
-
Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activitiesNakahata, Shingo et al. | 2005
- 2090
-
Human Ku70-80 interacts directly with hTR, the RNA component of human telomeraseTing, Nicholas S.Y. et al. | 2005
- 2099
-
Torque-limited RecA polymerization on dsDNAvan der Heijden, Thijn et al. | 2005
- 2106
-
U7 snRNP-specific Lsm11 protein: dual binding contacts with the 100 kDa zinc finger processing factor (ZFP100) and a ZFP100-independent function in histone RNA 3prime end processingAzzouz, T. N. / Gruber, A. / Schumperli, D. et al. | 2005
- 2106
-
U7 snRNP-specific Lsm11 protein: dual binding contacts with the 100 kDa zinc finger processing factor (ZFP100) and a ZFP100-independent function in histone RNA 3' end processingAzzouz, Teldja N. et al. | 2005
- 2118
-
Predicting the secondary structures and tertiary interactions of 211 group I introns in IE subgroupLi, Zhijie et al. | 2005
- 2129
-
Detecting DNA-binding helix-turn-helix structural motifs using sequence and structure informationPellegrini-Calace, Marialuisa et al. | 2005
- 2141
-
Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase EEven, Sergine et al. | 2005
- 2153
-
DNA-binding specificity of rice mariner-like transposases and interactions with Stowaway MITEsFeschotte, Cédric et al. | 2005
- 2166
-
Eukaryotic RNases H1 act processively by interactions through the duplex RNA-binding domainGaidamakov, Sergei A. et al. | 2005
- 2176
-
Masking repeats while clustering ESTsSchneeberger, Korbinian et al. | 2005
- 2181
-
Repair activity of base and nucleotide excision repair enzymes for guanine lesions induced by nitrosative stressNakano, Toshiaki et al. | 2005
- 2192
-
Overexpression of Bcl-2 is associated with apoptotic resistance to the G-quadruplex ligand 12459 but is not sufficient to confer resistance to long-term senescenceDouarre, Céline et al. | 2005
- 2204
-
APE1-dependent repair of DNA single-strand breaks containing 3'-end 8-oxoguanineParsons, Jason L. et al. | 2005
- 2204
-
APE1-dependent repair of DNA single-strand breaks containing 3prime-end 8-oxoguanineParsons, J. L. / Dianova, I. I. / Dianov, G. L. et al. | 2005
- 2210
-
Asymmetry in RNA pseudoknots: observation and theoryAalberts, Daniel P. et al. | 2005
- 2215
-
Pre-mRNA processing enhancer (PPE) elements from intronless genes play additional roles in mRNA biogenesis than do ones from intron-containing genesGuang, Shouhong et al. | 2005
- 2227
-
Nematode selenoproteome: the use of the selenocysteine insertion system to decode one codon in an animal genome?Taskov, Kalin et al. | 2005
- 2239
-
Factors affecting translation at the programmed -1 ribosomal frameshifting site of Cocksfoot mottle virus RNA in vivoMäkeläinen, Katri et al. | 2005
- 2248
-
Cryptic promoter activity in the DNA sequence corresponding to the pim-1 5'-UTRWang, Zeping et al. | 2005
- 2248
-
Cryptic promoter activity in the DNA sequence corresponding to the pim-1 5prime-UTRWang, Z. / Weaver, M. / Magnuson, N. S. et al. | 2005
- 2259
-
Enzymatic processing of replication and recombination intermediates by the vaccinia virus DNA polymeraseHamilton, Michael D. et al. | 2005
- 2269
-
The repressor DREAM acts as a transcriptional activator on Vitamin D and retinoic acid response elementsScsucova, Sona et al. | 2005
- 2280
-
Influence of RNA structural stability on the RNA chaperone activity of the Escherichia coli protein StpAGrossberger, Rupert et al. | 2005
- 2290
-
Computational technique for improvement of the position-weight matrices for the DNA-protein binding sitesGershenzon, Naum I. et al. | 2005
- 2302
-
TM-align: a protein structure alignment algorithm based on the TM-scoreZhang, Yang et al. | 2005
- 2310
-
Inhibition of archaeal growth and DNA topoisomerase VI activities by the Hsp90 inhibitor radicicolGadelle, D. et al. | 2005
- 2318
-
COUP-TF interacting protein 2 represses the initial phase of HIV-1 gene transcription in human microglial cellsMarban, Céline et al. | 2005
- 2332
-
High frequency trans-splicing in a cell line producing spliced and polyadenylated RNA polymerase I transcripts from an rDNA-myc chimeric geneChen, Célia et al. | 2005
- 2343
-
Bacillus subtilis RecN binds and protects 3prime-single-stranded DNA extensions in the presence of ATPSanchez, H. / Alonso, J. C. et al. | 2005
- 2343
-
Bacillus subtilis RecN binds and protects 3'-single-stranded DNA extensions in the presence of ATPSanchez, Humberto et al. | 2005
- 2352
-
Analysis of host response to bacterial infection using error model based gene expression microarray experimentsStekel, Dov J. et al. | 2005
- 2355
-
Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signalsNakao, Mitsuteru et al. | 2005
- 2364
-
Characterization of the DNA-binding domain and identification of the active site residue in the 'Gyr A' half of Leishmania donovani topoisomerase IISengupta, Tanushri et al. | 2005
- 2374
-
Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding abilityHarrison, Paul M. et al. | 2005
- 2384
-
Independent binding sites of small protein B onto transfer-messenger RNA during trans-translationMetzinger, Laurent et al. | 2005
- 2395
-
Recurrent structural RNA motifs, Isostericity Matrices and sequence alignmentsLescoute, Aurélie et al. | 2005
- 2410
-
The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcriptionNieduszynski, Conrad A. et al. | 2005
- 2421
-
Dissecting eukaryotic translation and its control by ribosome density mappingArava, Yoav et al. | 2005
- 2433
-
A benchmark of multiple sequence alignment programs upon structural RNAsGardner, Paul P. et al. | 2005
- 2440
-
Regulation of the human cyclin C gene via multiple vitamin D3-responsive regions in its promoterSinkkonen, Lasse et al. | 2005
- 2452
-
Cyclohexenyl nucleic acids: conformationally flexible oligonucleotidesNauwelaerts, Koen et al. | 2005
- 2464
-
Studies on Escherichia coli RNase P RNA with Zn2+ as the catalytic cofactorCuzic, Simona et al. | 2005
- 2475
-
Repair of cyclobutane pyrimidine dimers or dimethylsulfate damage in DNA is identical in normal or telomerase-immortalized human skin fibroblastsBates, Steven E. et al. | 2005
- 2486
-
Selenocysteine insertion directed by the 3prime-UTR SECIS element in Escherichia coliSu, D. / Li, Y. / Gladyshev, V. N. et al. | 2005
- 2486
-
Selenocysteine insertion directed by the 3'-UTR SECIS element in Escherichia coliSu, Dan et al. | 2005
- 2493
-
U1 small nuclear RNP from Trypanosoma brucei: a minimal U1 snRNA with unusual protein componentsPalfi, Zsofia et al. | 2005