Predicting Local Protein 3D Structures Using Clustering Deep Recurrent Neural Network (Englisch)
- Neue Suche nach: Zhong, Wei
- Weitere Informationen zu Zhong, Wei:
- https://orcid.org/0000-0002-6199-1376
- Neue Suche nach: Gu, Feng
- Weitere Informationen zu Gu, Feng:
- https://orcid.org/0000-0001-5337-4282
- Neue Suche nach: Zhong, Wei
- Weitere Informationen zu Zhong, Wei:
- https://orcid.org/0000-0002-6199-1376
- Neue Suche nach: Gu, Feng
- Weitere Informationen zu Gu, Feng:
- https://orcid.org/0000-0001-5337-4282
In:
IEEE/ACM Transactions on Computational Biology and Bioinformatics
;
19
, 1
;
593-604
;
2022
- Aufsatz (Zeitschrift) / Elektronische Ressource
-
Titel:Predicting Local Protein 3D Structures Using Clustering Deep Recurrent Neural Network
-
Beteiligte:Zhong, Wei ( Autor:in ) / Gu, Feng ( Autor:in )
-
Erschienen in:IEEE/ACM Transactions on Computational Biology and Bioinformatics ; 19, 1 ; 593-604
-
Verlag:
- Neue Suche nach: IEEE
-
Erscheinungsdatum:01.01.2022
-
Format / Umfang:1705364 byte
-
ISSN:
-
DOI:
-
Medientyp:Aufsatz (Zeitschrift)
-
Format:Elektronische Ressource
-
Sprache:Englisch
-
Datenquelle:
Inhaltsverzeichnis – Band 19, Ausgabe 1
Zeige alle Jahrgänge und Ausgaben
Die Inhaltsverzeichnisse werden automatisch erzeugt und basieren auf den im Index des TIB-Portals verfügbaren Einzelnachweisen der enthaltenen Beiträge. Die Anzeige der Inhaltsverzeichnisse kann daher unvollständig oder lückenhaft sein.
- 1
-
EditorialSun, Sunny / Chen, Yi-Ping Phoebe et al. | 2022
- 1
-
2021 Index IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 18| 2022
- 3
-
Resting State Functional Connectivity Analysis During General Anesthesia: A High-Density EEG StudyBi, Hui / Cao, Shumei / Yan, Hanying / Jiang, Zhongyi / Zhang, Jun / Zou, Ling et al. | 2022
- 14
-
Shaking the β-BulgesCraveur, Pierrick / Narwani, Tarun J. / Srinivasan, Narayanaswamy / Gelly, Jean-Christophe / Rebehmed, Joseph / de Brevern, Alexandre G. et al. | 2022
- 19
-
A New Family of Similarity Measures for Scoring Confidence of Protein Interactions Using Gene OntologyPaul, Madhusudan / Anand, Ashish et al. | 2022
- 31
-
A Clinical Dataset and Various Baselines for Chromosome Instance SegmentationHuang, Runhua / Lin, Chengchuang / Yin, Aihua / Chen, Hanbiao / Guo, Li / Zhao, Gansen / Fan, Xiaomao / Li, Shuangyin / Yang, Jinji et al. | 2022
- 40
-
SPP-CPI: Predicting Compound–Protein Interactions Based On Neural NetworksQian, Ying / Li, Xuelian / Zhang, Qian / Zhang, Jiongmin et al. | 2022
- 48
-
MultiTrans: An Algorithm for Path Extraction Through Mixed Integer Linear Programming for Transcriptome AssemblyZhao, Jin / Feng, Haodi / Zhu, Daming / Lin, Yu et al. | 2022
- 57
-
GraphPlas: Refined Classification of Plasmid Sequences Using Assembly GraphsWickramarachchi, Anuradha / Lin, Yu et al. | 2022
- 68
-
Leveraging Sequential and Spatial Neighbors Information by Using CNNs Linked With GCNs for Paratope PredictionLu, Shuai / Li, Yuguang / Wang, Fei / Nan, Xiaofei / Zhang, Shoutao et al. | 2022
- 75
-
An Aggregation Method to Identify the RNA Meta-Stable Secondary Structure and its Functionally Interpretable Structure EnsembleYang, Tzu-Hsien et al. | 2022
- 87
-
An Extensive Examination of Discovering 5-Methylcytosine Sites in Genome-Wide DNA Promoters Using Machine Learning Based ApproachesNguyen, Trinh-Trung-Duong / Tran, The-Anh / Le, Nguyen-Quoc-Khanh / Pham, Dinh-Minh / Ou, Yu-Yen et al. | 2022
- 95
-
Guest Editorial: Deep Learning For GenomicsDi Camillo, Barbara / Nicosia, Giuseppe et al. | 2022
- 97
-
Novel Transformer Networks for Improved Sequence Labeling in genomicsClauwaert, Jim / Waegeman, Willem et al. | 2022
- 107
-
Effective Cancer Subtype and Stage Prediction via Dropfeature-DNNsChen, Zhong / Zhang, Wensheng / Deng, Hongwen / Zhang, Kun et al. | 2022
- 121
-
Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer and Multi-Omic DataCristovao, Francisco / Cascianelli, Silvia / Canakoglu, Arif / Carman, Mark / Nanni, Luca / Pinoli, Pietro / Masseroli, Marco et al. | 2022
- 135
-
Representation Learning for the Clustering of Multi-Omics DataViaud, Gautier / Mayilvahanan, Prasanna / Cournede, Paul-Henry et al. | 2022
- 146
-
Graph Convolutional Networks for Drug Response PredictionNguyen, Tuan / Nguyen, Giang T. T. / Nguyen, Thin / Le, Duc-Hau et al. | 2022
- 155
-
Deep Neural Network and Extreme Gradient Boosting Based Hybrid Classifier for Improved Prediction of Protein-Protein InteractionMahapatra, Satyajit / Gupta, Vivek Raj / Sahu, Sitanshu Sekhar / Panda, Ganapati et al. | 2022
- 166
-
Guest Editors’ Introduction to the Special Section on Bioinformatics Research and ApplicationsCai, Zhipeng / Li, Min / Skums, Pavel et al. | 2022
- 168
-
Predicting Drug-Drug Interactions Based on Integrated Similarity and Semi-Supervised LearningYan, Cheng / Duan, Guihua / Zhang, Yayan / Wu, Fang-Xiang / Pan, Yi / Wang, Jianxin et al. | 2022
- 180
-
Computational Approaches to Detect Illicit Drug Ads and Find Vendor Communities Within Social Media PlatformsZhao, Fengpan / Skums, Pavel / Zelikovsky, Alex / Sevigny, Eric L. / Swahn, Monica Haavisto / Strasser, Sheryl M. / Huang, Yan / Wu, Yubao et al. | 2022
- 192
-
A Refined 3-in-1 Fused Protein Similarity Measure: Application in Threshold-Free Hub DetectionAcharya, Sudipta / Cui, Laizhong / Pan, Yi et al. | 2022
- 209
-
Macromolecules Structural Classification With a 3D Dilated Dense Network in Cryo-Electron TomographyGao, Shan / Han, Renmin / Zeng, Xiangrui / Liu, Zhiyong / Xu, Min / Zhang, Fa et al. | 2022
- 220
-
K2Mem: Discovering Discriminative K-mers From Sequencing Data for Metagenomic Reads ClassificationStorato, Davide / Comin, Matteo et al. | 2022
- 230
-
TNet: Transmission Network Inference Using Within-Host Strain Diversity and its Application to Geographical Tracking of COVID-19 SpreadDhar, Saurav / Zhang, Chengchen / Mandoiu, Ion I. / Bansal, Mukul S. et al. | 2022
- 243
-
EpiMC: Detecting Epistatic Interactions Using Multiple ClusteringsWang, Jun / Zhang, Huiling / Ren, Wei / Guo, Maozu / Yu, Guoxian et al. | 2022
- 255
-
A Heterogeneous Information Network Model for Long Non-Coding RNA Function PredictionV, Sunil Kumar P / Thahsin, Adheeba / M, Manju / G, Gopakumar et al. | 2022
- 267
-
A Novel Encoding and Decoding Calibration Guiding Pathway for Pathological Image AnalysisLi, Hansheng / Li, Jianping / Kang, Yuxin / Wang, Chunbao / Liu, Feihong / Hui, Wenli / Bo, Qirong / Cui, Lei / Feng, Jun / Yang, Lin et al. | 2022
- 275
-
AMP0: Species-Specific Prediction of Anti-microbial Peptides Using Zero and Few Shot LearningGull, Sadaf / Minhas, Fayyaz et al. | 2022
- 284
-
An Efficient Multiresolution Clustering for Motif Discovery in Complex NetworksPursalim, Mahdi / Keong, Kwoh Chee et al. | 2022
- 295
-
An Improved Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural NetworkYang, Yuning / Yu, Jiawen / Liu, Zhe / Wang, Xi / Wang, Han / Ma, Zhiqiang / Xu, Dong et al. | 2022
- 305
-
An Integrative Framework of Heterogeneous Genomic Data for Cancer Dynamic Modules Based on Matrix DecompositionMa, Xiaoke / Sun, Penggang / Gong, Maoguo et al. | 2022
- 317
-
Analysis of Pattern Formation by Colored Petri Nets With Quantitative Regulation of Gene Expression LevelLiu, Fei / Yamamoto, Ena / Shirahama, Katsunobu / Saitoh, Tsubasa / Aoyama, Shuhei / Harada, Yumiko / Murakami, Ryutaro / Matsuno, Hiroshi et al. | 2022
- 328
-
Boltzmann Machine Learning and Regularization Methods for Inferring Evolutionary Fields and Couplings From a Multiple Sequence AlignmentMiyazawa, Sanzo et al. | 2022
- 343
-
Clustering Based Parameter Estimation of Thyroid Hormone PathwayGhosh, Devleena / Mandal, Chittaranjan et al. | 2022
- 355
-
Compressed Sparse FM-Index: Fast Sequence Alignment Using Large K-StepsLangarita, Ruben / Armejach, Adria / Setoain, Javier / Ibanez-Marin, Pablo / Alastruey-Benede, Jesus / Moreto, Miquel et al. | 2022
- 369
-
Convolutional Embedded Networks for Population Scale Clustering and Bio-Ancestry InferencingKarim, Md. Rezaul / Cochez, Michael / Zappa, Achille / Sahay, Ratnesh / Rebholz-Schuhmann, Dietrich / Beyan, Oya / Decker, Stefan et al. | 2022
- 383
-
Correlated Motions and Dynamics in Different Domains of Epidermal Growth Factor Receptor With L858R and T790M MutationsQureshi, Rizwan / Ghosh, Avirup / Yan, Hong et al. | 2022
- 395
-
De novo Protein Structure Prediction by Coupling Contact With Distance ProfilePeng, Chun-Xiang / Zhou, Xiao-Gen / Zhang, Gui-Jun et al. | 2022
- 407
-
Deep Learning in Drug Design: Protein-Ligand Binding Affinity PredictionRezaei, Mohammad A. / Li, Yanjun / Wu, Dapeng / Li, Xiaolin / Li, Chenglong et al. | 2022
- 418
-
DeepOlf: Deep Neural Network Based Architecture for Predicting Odorants and Their Interacting Olfactory ReceptorsSharma, Anju / Kumar, Rajnish / Semwal, Rahul / Aier, Imlimaong / Tyagi, Pankaj / Varadwaj, Pritish K. et al. | 2022
- 429
-
Generic Context-Aware Group ContributionsFlamm, Christoph / Hellmuth, Marc / Merkle, Daniel / Nojgaard, Nikolai / Stadler, Peter F. et al. | 2022
- 443
-
GenSeg and MR-GenSeg: A Novel Segmentation Algorithm and its Parallel MapReduce Based Approach for Identifying Genomic Regions With Copy Number VariationsSinha, Rituparna / Pal, Rajat K. / De, Rajat K. et al. | 2022
- 455
-
Graph Convolutional Autoencoder and Generative Adversarial Network-Based Method for Predicting Drug-Target InteractionsSun, Chang / Xuan, Ping / Zhang, Tiangang / Ye, Yilin et al. | 2022
- 465
-
GraPhyC: Using Consensus to Infer Tumor EvolutionGovek, Kiya / Sikes, Camden / Zhou, Yangqiaoyu / Oesper, Layla et al. | 2022
- 479
-
Group Sparse Joint Non-Negative Matrix Factorization on Orthogonal Subspace for Multi-Modal Imaging Genetics Data AnalysisPeng, Peng / Zhang, Yipu / Ju, Yongfeng / Wang, Kaiming / Li, Gang / Calhoun, Vince D. / Wang, Yu-Ping et al. | 2022
- 491
-
GuiltyTargets: Prioritization of Novel Therapeutic Targets With Network Representation LearningMuslu, Ozlem / Hoyt, Charles Tapley / Lacerda, Mauricio / Hofmann-Apitius, Martin / Frohlich, Holger et al. | 2022
- 501
-
Higher-Order Proximity-Based MiRNA-Disease Associations PredictionZhang, Sai / Li, Jin / Zhou, Wei / Li, Tong / Zhang, Yang / Wang, Jingru et al. | 2022
- 513
-
Identifying Gene Network Rewiring Based on Partial CorrelationTan, Yu-Ting / Ou-Yang, Le / Jiang, Xingpeng / Yan, Hong / Zhang, Xiao-Fei et al. | 2022
- 522
-
Integrative Biological Network Analysis to Identify Shared Genes in Metabolic DisordersTenekeci, Samet / Isik, Zerrin et al. | 2022
- 531
-
JUPPI: A Multi-Level Feature Based Method for PPI Prediction and a Refined Strategy for Performance AssessmentHalder, Anup Kumar / Bandyopadhyay, Soumyendu Sekhar / Chatterjee, Piyali / Nasipuri, Mita / Plewczynski, Dariusz / Basu, Subhadip et al. | 2022
- 543
-
META-BASE: A Novel Architecture for Large-Scale Genomic Metadata IntegrationBernasconi, Anna / Canakoglu, Arif / Masseroli, Marco / Ceri, Stefano et al. | 2022
- 558
-
Network Classification Based on Reducibility With Respect to the Stability of Canalizing Power of Genes in a Gene Regulatory Network – A Boolean Network Modeling PerspectiveKim, Eunji / Ivanov, Ivan / Dougherty, Edward R. et al. | 2022
- 569
-
On Monomeric and Multimeric Structures-Based Protein-Ligand InteractionsDai, Yajun / Li, Yang / Wang, Liping / Peng, Zhenling / Yang, Jianyi et al. | 2022
- 575
-
PDGNet: Predicting Disease Genes Using a Deep Neural Network With Multi-View FeaturesYang, Kuo / Zheng, Yi / Lu, Kezhi / Chang, Kai / Wang, Ning / Shu, Zixin / Yu, Jian / Liu, Baoyan / Gao, Zhuye / Zhou, Xuezhong et al. | 2022
- 585
-
Pr[m]: An Algorithm for Protein Motif DiscoverySemwal, Rahul / Aier, Imlimaong / Raj, Utkarsh / Varadwaj, Pritish Kumar et al. | 2022
- 593
-
Predicting Local Protein 3D Structures Using Clustering Deep Recurrent Neural NetworkZhong, Wei / Gu, Feng et al. | 2022
- 605
-
Relating Translation Efficiency to Protein Networks Provides Evolutionary Insights in Shewanella and Its Implications for Extracellular Electron TransferDing, D. W. / Sun, X. et al. | 2022
- 614
-
SACall: A Neural Network Basecaller for Oxford Nanopore Sequencing Data Based on Self-Attention MechanismHuang, Neng / Nie, Fan / Ni, Peng / Luo, Feng / Wang, Jianxin et al. | 2022
- 624
-
SelfE: Gene Selection via Self-Expression for Single-Cell DataRai, Priyadarshini / Sengupta, Debarka / Majumdar, Angshul et al. | 2022
- 633
-
Significance-Based Essential Protein DiscoveryLiu, Yan / Liang, Hao / Zou, Quan / He, Zengyou et al. | 2022
- 643
-
SSKM_Succ: A Novel Succinylation Sites Prediction Method Incorporating K-Means Clustering With a New Semi-Supervised Learning AlgorithmNing, Qiao / Ma, Zhiqiang / Zhao, Xiaowei / Yin, Minghao et al. | 2022