αCORR: a novel algorithm for clustering gene expression data (Englisch)
- Neue Suche nach: Sharara, Hossam S.
- Neue Suche nach: Ismail, Mohamed A.
- Neue Suche nach: Sharara, Hossam S.
- Neue Suche nach: Ismail, Mohamed A.
In:
2007 IEEE 7th International Symposium on BioInformatics and BioEngineering
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974-981
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2007
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ISBN:
- Aufsatz (Konferenz) / Elektronische Ressource
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Titel:αCORR: a novel algorithm for clustering gene expression data
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Beteiligte:Sharara, Hossam S. ( Autor:in ) / Ismail, Mohamed A. ( Autor:in )
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Erschienen in:
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Verlag:
- Neue Suche nach: IEEE
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Erscheinungsdatum:01.10.2007
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Format / Umfang:2258660 byte
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ISBN:
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DOI:
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Medientyp:Aufsatz (Konferenz)
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Format:Elektronische Ressource
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Sprache:Englisch
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Datenquelle:
Inhaltsverzeichnis Konferenzband
Die Inhaltsverzeichnisse werden automatisch erzeugt und basieren auf den im Index des TIB-Portals verfügbaren Einzelnachweisen der enthaltenen Beiträge. Die Anzeige der Inhaltsverzeichnisse kann daher unvollständig oder lückenhaft sein.
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IEEE 7th BIBE Invited Plenary Keynote: Intrinsically Disordered Proteins: Predictions and ApplicationsDunker, A. Keith / Oldfield, Christopher J. / Meng, Jingwei / Romero, Pedro / Yang, Jack Y. / Obradovic, Zoran / Uversky, Vladimir N. et al. | 2007
- 2
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IEEE 7th BIBE Invited Plenary Keynote: Stochasticity and Networks in Genomic DataQuackenbush, John et al. | 2007
- 3
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IEEE 7th BIBE Research Tutorial Lecture: Decoding Novel Genomes: From Microbiomes to the EukaryotaBorodovsky, Mark et al. | 2007
- 4
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IEEE 7th BIBE Keynote: Promoter studies in the human genome: one perspective on an unfinished storyYang, Mary Qu / Elnitski, Laura L. et al. | 2007
- 7
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Protein Structure Prediction and Its Understanding Based on Machine Learning MethodsPan, Yi et al. | 2007
- 8
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IEEE 7th BIBE Invited Plenary Keynote: Statistial Analysis of nucleosome occupancy and histone modification dataYuan, Guocheng / Liu, Jun S et al. | 2007
- 9
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An Investigation into the Feasibility of Detecting Microscopic Disease Using Machine LearningYang, Mary Qu / Yang, Jack Y. et al. | 2007
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- 12
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IEEE 7th BIBE Invited Tutorial Lecture: Intrinsically Disordered Proteins in Human DiseasesUversky, Vladimir N. / Oldfield, Christopher J. / Dunker, A. Keith et al. | 2007
- 13
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- 908
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Fractal Dimension of Mie Scattering Spectra for the Appraisal of Infected HeLa Cells in CulturesDobrescu, Radu / Ichim, Loretta et al. | 2007
- 914
-
Complexity-theoretic Modeling of Biological Cyanide Poisoning as Security Attack in Self-organizing NetworksKong, Jiejun / Hong, Xiaoyan / Wu, Dapeng / Gerla, Mario et al. | 2007
- 922
-
Quantitative and Probabilistic Modeling in Pathway LogicAbate, Alessandro / Bai, Yu / Sznajder, Nathalie / Talcott, Carolyn / Tiwari, Ashish et al. | 2007
- 930
-
A 2D Vibration Array as an Assistive Device for Visually ImpairedDakopoulos, D. / Boddhu, S. K. / Bourbakis, N. et al. | 2007
- 938
-
Characterizing and Predicting Catalytic Residues in Enzyme Active Sites Based on Local Properties: A Machine Learning ApproachBobadilla, Leonardo / Nino, Fernando / Cepeda, Edilberto / Patarroyo, Manuel A. et al. | 2007
- 946
-
Predicting Protein-Protein Interaction Based on Fisher Scores Extracted from Domain ProfilesPatel, Tapan / Li Liao, et al. | 2007
- 952
-
A Novel Sequence-Structure Approach for Accurate Prediction of Resistance to HIV-1 Protease InhibitorsMasso, Majid / Vaisman, Iosif I. et al. | 2007
- 959
-
Prediction of Histone Modifications in DNA sequencesPham, Tho Hoan / Ho, Tu Bao / Tran, Dang Hung / Satou, Kenji et al. | 2007
- 967
-
Feature Selection and Partial Least Squares Based Dimension Reduction for Tumor ClassificationBu, Hua-Long / Li, Guo-Zheng / Zeng, Xue-Qiang / Yang, Jack Y. / Yang, Mary Qu et al. | 2007
- 974
-
αCORR: a novel algorithm for clustering gene expression dataSharara, Hossam S. / Ismail, Mohamed A. et al. | 2007
- 982
-
An Intelligent System for Searching Genomic SequencesGummuluru, Vandana / Chen, Su-Shing et al. | 2007
- 987
-
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular ComplexesBlinov, Michael L. / Moraru, Ion I. et al. | 2007
- 995
-
BALBOA: Extending Bicluster Analysis to Classify ORFs using Expression DataBryan, Kenneth / Cunningham, Padraig et al. | 2007
- 1003
-
A Comprehensive Fuzzy-Based Framework for Cancer Microarray Data Gene Expression AnalysisWang, Zhenyu / Palade, Vasile et al. | 2007
- 1011
-
Ensemble of Kernel Based Classifiers to Improve the Human Cancer Prediction using DNA MicroarraysBlanco, Angela / Martin-Merino, Manuel / De Las Rivas, Javier et al. | 2007
- 1019
-
Mining Order Preserving Patterns in Microarray Data by Finding Frequent OrdersLi Teng, / Chan, Laiwan et al. | 2007
- 1027
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A New Smoothing Model for Analyzing Array CGH DataNguyen, Nha / Huang, Heng / Oraintara, Soontorn / Vo, An et al. | 2007
- 1035
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Inference of Gene Regulatory Networks Using Time Sliding Comparison and Transcriptional Lagging Time from Time Series Gene Expression ProfilesKim, Sheehyun / Kim, Dongsup et al. | 2007
- 1041
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Multivariate Feature Selection using Random Subspace Classifiers for Gene Expression DataKamath, Vidya P. / Hall, Lawrence O. / Yeatman, Timothy J. / Eschrich, Steven. A et al. | 2007
- 1046
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Gene Selection via Matrix FactorizationWang, Fei / Li, Tao et al. | 2007
- 1051
-
Mutual Information based Minimum Spanning Trees Model for Selecting Discriminative GenesZhou, Fang / He, Jieyue / Zhong, Wei et al. | 2007
- 1056
-
Gene-Markers Representation for Microarray Data IntegrationBaralis, Elena / Ficarra, Elisa / Fiori, Alessandro / Macii, Enrico et al. | 2007
- 1061
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Partial Mixture Model for Tight Clustering in Exploratory Gene Expression AnalysisYuan, Yinyin / Li, Chang-Tsun et al. | 2007
- 1066
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rSWTi: A Robust Stationary Wavelet Denoising Method for Array CGH DataWang, Yuhang / Wang, Siling / Zinn, Andrew R. et al. | 2007
- 1071
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An Empirical CDF Approach to Estimate the Significance of Gene Ranking for Finding Differentially Expressed GenesShaik, J. / George, E.O. / Yeasin, M. et al. | 2007
- 1076
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Gene expression profiling and machine learning to understand and predict primary graft dysfunctionRay, Monika / Dharmarajan, Sekhar / Freudenberg, Johannes / Patterson, G. Alexander / Zhang, Weixiong et al. | 2007
- 1081
-
Sensitivity and Consistency of Affymetrix GeneChip Normalization MethodsFox, Jared / Brown, Nik et al. | 2007
- 1087
-
Statistical Shape Analysis of the Corpus Callosum in Subtypes of AutismHe, Qing / Duan, Ye / Miles, Judith / Takahashi, Nicole et al. | 2007
- 1092
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Simulation and Visualization of Menisci-Femur Contact Using Patient-Specific Deformable ModelsZhu, Ying et al. | 2007
- 1097
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Improved edge map of geometrical active contour model based on coupling to anisotropic diffusion filteringDerraz, Foued / Taleb-Ahmed, Abdelmalik / Chikh, Azzeddine / Bereksi-Reguig, Fethi et al. | 2007
- 1102
-
Analysis of cardiac wall motion estimation methodsbehbahani, Soroor / magholi, Keivan et al. | 2007
- 1108
-
Partial transmission high-speed continuous tracking multi-leaf collimator for 4D adaptive radiation therapyPodder, Tarun K. / Buzurovic, Ivan / Hu, Yida / Galvin, James M. / Yu, Yan et al. | 2007
- 1113
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Quantitative Analysis of Inter-object Spatial Relationships in Biological ImagesAhmed, Wamiq M. / Jonczyk, Magdalena / Shamsaie, Ali / Ghafoor, Arif / Robinson, J. Paul et al. | 2007
- 1118
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Histogram Transformation for Inter-Modality Image RegistrationMeyer, Joerg et al. | 2007
- 1124
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The GPU on biomedical image processing for color and phenotype analysisRuiz, Antonio / Ujaldon, Manuel / Andrades, Jose Antonio / Becerra, Jose / Huang, Kun / Pan, Tony / Saltz, Joel et al. | 2007
- 1129
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Tissue Identification in Ultrasound Images using Rayleigh Local Parameter EstimationAja-Fernandez, Santiago / Martin-Fernandez, Marcos / Alberola-Lopez, Carlos et al. | 2007
- 1134
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Exploring Cardioneural Signals from Noninvasive ECG MeasurementArani, Amirali Shayan / Zhu, Yi / Cheng, Yi-Ning / Cheng, Chung-Kuan / Lin, Shien-Fong / Chen, Peng-Sheng et al. | 2007
- 1139
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MS Lesions Detection in MRI Using Grouping Artificial Immune NetworksYounis, Akmal A. / Soliman, Ahmed T. / Kabuka, Mansur R. / John, Nigel M. et al. | 2007
- 1147
-
Non-negative Tensor Factorization Based on Alternating Large-scale Non-negativity-constrained Least SquaresKim, Hyunsoo / Park, Haesun / Elden, Lars et al. | 2007
- 1152
-
A Computer Aided Tool for the Assessment of Human Sperm MorphologyCarrillo, Henry / Villarreal, Jorge / Sotaquira, Miguel / Goelkel, Alvaro / Gutierrez, Ricardo et al. | 2007
- 1158
-
Feature Estimation for Vocal Fold Edema Detection Using Short-Term Cepstral AnalysisNeto, Benedito G. Aguiar / Fechine, Joseana M. / Costa, Silvana Cunha / Muppa, Menaka et al. | 2007
- 1163
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A New Hybrid Technique for Dermatological Image RegistrationHuang, Heng / Bergstresser, Paul et al. | 2007
- 1168
-
PID Control based on BP Neural Network for the Regulation of Blood Glucose Level in DiabetesLi, Chengwei / Hu, Ruiqiang et al. | 2007
- 1173
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Spatiotemporal Analysis of an Agent-Based Model of a Colony of Keratinocytes: A First Approach for the Development of Validation MethodsPichardo-Almarza, Cesar / Smallwood, Rod / Billings, S. A. et al. | 2007
- 1178
-
A Suffix Tree Construction Algorithm for DNA SequencesHuo, Hongwei / Stojkovic, Vojislav et al. | 2007
- 1183
-
Identifying Fungal Regulatory Motif Patterns Using SCOPE, an Ensemble Learning Method Motif FinderMartyanov, Viktor / Elderon, Larkin / Gladfelter, Amy / Nair, Dhanalakshmi R. / Gross, Robert H. et al. | 2007
- 1188
-
Computational Identification of Cis-regulatory Elements Associated with Pungency of Chili PeppersJi, Tieming / Ranjan, Desh / Curry, Jeanne / O'Connell, Mary et al. | 2007
- 1194
-
Speeding Up Pairwise Sequence Alignments: A Scoring Scheme Reweighting Based ApproachGao, Yong / Henderson, Michael et al. | 2007
- 1199
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Iterative Refinement of Repeat Sequence Specification Using Constrained Pattern MatchingHe, Dan / Arslan, Abdullah N. / He, Yu / Wu, Xindong et al. | 2007
- 1204
-
Differential Scoring for Systolic Sequence Alignmentde la Serna, Antonio E. et al. | 2007
- 1209
-
Determining Domain Similarity and Domain-Protein Similarity Using Functional Similarity Measurements of Gene Ontology TermsGuntly, Lisa M. / Leopold, Jennifer L. / Maglia, Anne M. et al. | 2007
- 1214
-
Signal Representation and Processing of Nucleotide SequencesCristea, Paul / Tuduce, Rodica / Nastac, Iulian / Cornelis, Jan / Deklerck, Rudi / Andrei, Marius et al. | 2007
- 1220
-
Cluster Analysis of Regulatory Sequences with a Log Likelihood Ratio Statistics-based Similarity MeasureZheng, Huiru / Wang, Haiying / Hu, Jinglu et al. | 2007
- 1225
-
A PQRM-based PACS System for Advanced Medical Services under Grid EnvironmentNi, Yong-Jie / Youn, Chan-Hyun / Kim, Byoung-Jin / Han, Young-Joo / Liu, Peng et al. | 2007
- 1230
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Middleware based Inpatient Healthcare Information SystemHsieh, S. H. / Hsieh, S. L. / Weng, Y. C. / Yang, T. H. / Lai, Feipei / Cheng, P. H. / Ping, X.O. / Jan, M. Y. / Lin, J.C. / Peng, C.H. et al. | 2007
- 1235
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Generating social networks of intimate contacts for the study of public health intervention strategiesCorley, Courtney D. / Brown, Lindsey / Mikler, Armin R. / Cook, Diane J. / Singh, Karan et al. | 2007
- 1240
-
Yin Yang Mental Squares - An Equilibrium-Based System For Bipolar Neurobiological Pattern Classification and AnalysisZhang, Wen-Ran / Peace, Karl E. et al. | 2007
- 1245
-
Automatically Extracting Acronyms from Biomedical TextFox, Jared / Brown, Nik et al. | 2007
- 1249
-
Feature Extraction and Parameters Selection of Classification Model on Brain-Computer InterfaceZhao, Mingyuan / Zhou, Mingtian / Zhu, Qingxin / Yang, Ping et al. | 2007
- 1254
-
Consistent Modeling, Integration and Simulation of Molecular Interaction Networks in Space-Time DimensionChang, Rui et al. | 2007
- 1260
-
Feature Reduction for Gene Regulatory Network ControlTan, Mehmet / Polat, Faruk / Alhajj, Reda et al. | 2007
- 1265
-
Graph Mining of Networks from Genome BiologyChin, George / Nakamura, Grant C. / Chavarria, Daniel G. / Sofia, Heidi J. et al. | 2007
- 1270
-
Structural Prediction of Protein-Protein Interactions in Saccharomyces cerevisiaeParadesi, Martin S.R. / Caragea, Doina / Hsu, William H. et al. | 2007
- 1275
-
Complete Backtranslation of Oligopeptides for Metabolic Pathways Exploration of Complex Environments using Functional MicroarraysMissaoui, Mohieddine / Hill, David R.C. / Militon, Cecile / Peyret, Pierre et al. | 2007
- 1280
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A Structure Learning Algorithm for Inference of Gene Networks from Microarray Gene Expression Data Using Bayesian NetworksNumata, Kazuyuki / Imoto, Seiya / Miyano, Satoru et al. | 2007
- 1285
-
An Algorithm for Mining Fuzzy Association Rules Based on Immune PrinciplesLei, Zhang / Li Ren-hou, et al. | 2007
- 1290
-
Toward The Recognition Code Of Protein-DNA RecognitionShan, Juan / Wang, Yuxuan / Yan, Changhui et al. | 2007
- 1294
-
Self-Optimizing Parallel Algorithms for Haplotype Reconstruction and Their Evaluation on the JPT and CHB Genotype DataTrinca, Dragos / Rajasekaran, Sanguthevar et al. | 2007
- 1299
-
Reducing Folding Scenario Candidates in Pseudoknots Detection Using PLMM_DPSS Algorithm Integrated With Energy FiltersHuang, Xiaolu / Ali, Hesham et al. | 2007
- 1304
-
Exploring Topological Properties of NMR GraphsMicikevicius, Paulius / Deo, Narsingh et al. | 2007
- 1308
-
Probability Analysis on Associations of Adverse Drug Events with Drug-Drug InteractionsHuang, Yu-Ting / Lin, Shih-Fang / Chiu, Chung-Cheng / Yeh, Hsiang-Yuan / Soo, Von-Wun et al. | 2007
- 1313
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Combining Semantics, Context, and Statistical Evidence in Genomics Literature SearchUrbain, Jay / Goharian, Nazli / Frieder, Ophir et al. | 2007
- 1318
-
Graph and Topological Structure Mining on Scientific ArticlesWang, Fan / Jin, Ruoming / Agrawal, Gagan / Piontkivska, Helen et al. | 2007
- 1323
-
Supervised HITS Algorithm for MEDLINE Citation RankingLiu, Ying / Lin, Yongjing et al. | 2007
- 1328
-
Storing Efficiently Bioinformatics WorkflowsKinsy, Michel / Lacroix, Zoe et al. | 2007
- 1333
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Intelligent Interfaces for Mining Large-Scale RNAi-HCS Image DatabasesLin, Chen / Mak, Wayne / Hong, Pengyu / Sepp, Katharine / Perrimon, Norbert et al. | 2007
- 1338
-
GPX: A Tool for the Exploration and Visualization of Genome EvolutionNahar, Neha / Hamel, Lutz / Poptsova, Maria S. / Gogarten, J. Peter et al. | 2007
- 1343
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SBLAST: Structural Basic Local Alignment Searching Tools using Geometric HashingMilledge, Tom / Zheng, Gaolin / Mullins, Tim / Narasimhan, Giri et al. | 2007
- 1348
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G-protein Coupled Receptor Subfamilies Prediction Based on Nearest Neighbor ApproachFayyaz, Mudassir / Mujahid, Adnan / Khan, Asifullah / Choi, Tae-Sun / Iqbal, Nadeem et al. | 2007
- 1355
-
Protein Secondary Structure Prediction Using Genetic Neural Support Vector MachinesReyaz-Ahmed, Anjum / Zhang, Yan-Qing et al. | 2007
- 1360
-
An HV-SVM Classifier to Infer TF-TF Interactions Using Protein Domains and GO AnnotationsLi, Xiao-Li / Lee, Jun-Xiang / Veeravalli, Bharadwaj / Ng, See-Kiong et al. | 2007
- 1365
-
Supervised Statistical and Machine Learning Approaches to Inferring Pairwise and Module-Based Protein Interaction NetworksBrowne, Fiona / Wang, Haiying / Zheng, Huiru / Azuaje, Francisco et al. | 2007
- 1370
-
Predicting Protein Subcelluar Localizations Using Weighted Euclidian DistanceHu, Jing / Yan, Changhui et al. | 2007
- 1374
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An efficient data structure for applying multiple seeds in homology searchKhodabakhshi, Alireza Hadj / Mirzazadeh, Mehdi / Gupta, Arvind et al. | 2007
- 1379
-
A Mixture of Experts Method for Predicting Domain Boundaries in ProteinsMacDonald, Ian / Berg, George et al. | 2007
- 1384
-
SIGN: reliable protein interaction identification by integrating the Similarity In GO and the similarity in protein interaction NetworksHwang, Woochang / Kim, Taehyong / Cho, Young-Rae / Zhang, Aidong / Ramanathan, Murali et al. | 2007
- 1389
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Identification of Differential Flow Cytometry ExpressionRossin, Elizabeth / Pyne, Saumyadipta / Hahne, Florian / De Jager, Philip L. et al. | 2007
- 1394
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Performance Characterization of BLAST for the GridAfgan, Enis / Bangalore, Purushotham et al. | 2007
- 1399
-
Large-scale Discovery of Regulatory Motifs Involved in Alternative SplicingZhao, Sihui / Kim, Jihye / Heber, Steffen et al. | 2007
- 1404
-
Semiparametric RMA Background-Correction for Oligonucleotide ArraysBebu, Ionut / Seillier-Moiseiwitsch, Francoise / Liu, Hongfang et al. | 2007
- 1409
-
Alternative Splicing: Associating Frequency with IsoformsRoy, Anuradha / Leopold, Jennifer L. / Maglia, Anne M. et al. | 2007
- 1414
-
A Proposed Statistical Protocol for the Analysis of Metabolic Toxicological Data Derived from NMR SpectroscopyKelly, Benjamin J. / Anderson, Paul E. / Reo, Nicholas V. / DelRaso, Nicholas J. / Doom, Travis E. / Raymer, Michael L. et al. | 2007
- 1419
-
A Framework for Mass Spectral Quality Assessment without Prior InformationWu, Fang-Xiang / Ding, Jiarui / Poirier, Guy G. et al. | 2007
- 1424
-
Using long fragments to reconstruct RNA backbonesUtriainen, Tapani / Kemp, Graham J.L. et al. | 2007
- 1429
-
A Modified Uniformization Method for the Chemical Master EquationZhang, Jingwei / Watson, Layne T. et al. | 2007
- 1434
-
Decision Fusion of Circulating Markers for Breast Cancer Detection in Premenopausal WomenJesneck, Jonathan L. / Mukherjee, Sayan / Nolte, Loren W. / Lokshin, Anna E. / Marks, Jeffrey R. / Lo, Joseph et al. | 2007
- 1439
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Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor ClassificationLi, Guo-Zheng / Zeng, Xue-Qiang / Yang, Jack Y. / Yang, Mary Qu et al. | 2007
- 1445
-
Functional and Molecular Imaging: Key Components of Personalized HealthcareSeltzer, Steven et al. | 2007
- 1446
-
Biomedical Literature MiningHu, Xiaohua et al. | 2007
- 1447
-
An Overview of Bidirectional PromotersYang, Mary Qu / Elnitski, Laura L. et al. | 2007
- 1448
-
Distributed Wireless Sensors on the Human BodyBajcsy, Ruzena et al. | 2007
- 1449
-
Transforming Medicine: Genomics, Bioinformatics, and Human HealthBaxevanis, Andreas D. et al. | 2007
- 1450
-
Integrative Biomedical InformaticsAthey, Brian D. et al. | 2007
- 1452
-
Bio-Nano-Info Integration for Personalized MedicineJakobsson, Eric / Wang, May D. / Molnar, Linda et al. | 2007
- 1453
-
Using The Soybean Genome Database (SoyGD) To Display and Analyze a 1 Gbp Genome SequenceLightfoot, David / Zhu, Mengxia Michelle et al. | 2007
- 1454
-
Biometrics Intelligence Information Systems and ApplicationsWang, Patrick S. P. et al. | 2007
- 1455
-
Knowledge Modeling for High Content Screening of Multimedia Biological DataGhafoor, Arif / Robinson, J. Paul et al. | 2007
- 1456
-
Reconstructing Signal Transduction from Raw Genomic DataZhulin, Igor B. et al. | 2007
- 1457
-
Studying Co-Regulation and Inter-Regulation of Genes via eQTL MappingZheng, Tian et al. | 2007
- 1458
-
Lecture on Progress toward Petascale Applications in Bioinformatics and Computational BiologyStewart, Craig A. / Lingwall, Malinda / Bader, David et al. | 2007
- 1459
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Performance Evaluation of a Scalable Molecular Dynamics Simulation Framework on a Massively-Parallel SystemAlam, Sadaf R. / Agarwal, Pratul K. / Kuehn, Jeffery A. et al. | 2007
- C1
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Covers| 2007
- ii
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Copyright page| 2007
- iii
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Message from the General, Program and Steering Committee Chairs| 2007
- nil1
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Author index| 2007
- vi
-
The 7th IEEE BIBE Organization| 2007
- x
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Members of Program and Scientific Review Committee| 2007
- xvi
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Members of Steering and Advisory Committee| 2007
- xvii
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Table of Contents| 2007