Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics (Englisch)
- Neue Suche nach: Althaus, Ernst
- Neue Suche nach: Althaus, Ernst
- Neue Suche nach: Caprara, Alberto
- Neue Suche nach: Lenhof, Hans-Peter
- Neue Suche nach: Reinert, Knut
In:
Bioinformatics
;
18
, 2
; S4
;
2013
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ISSN:
- Aufsatz (Zeitschrift) / Print
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Titel:Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics
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Beteiligte:
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Erschienen in:Bioinformatics ; 18, 2 ; S4
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Verlag:
- Neue Suche nach: Oxford Univ. Press
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Erscheinungsort:Oxford
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Erscheinungsdatum:2013
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ISSN:
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ZDBID:
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Medientyp:Aufsatz (Zeitschrift)
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Format:Print
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Sprache:Englisch
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Schlagwörter:
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Klassifikation:
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Datenquelle:
Inhaltsverzeichnis – Band 18, Ausgabe 2
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Die Inhaltsverzeichnisse werden automatisch erzeugt und basieren auf den im Index des TIB-Portals verfügbaren Einzelnachweisen der enthaltenen Beiträge. Die Anzeige der Inhaltsverzeichnisse kann daher unvollständig oder lückenhaft sein.
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Annotating regulatory DNA based on man-mouse genomic comparisonDieterich, C. et al. | 2002
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A similarity-based method for genome-wide prediction of disease-relevant human genesFreudenberg, J. et al. | 2002
- 223
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EDITORIAL - Beyond the central dogmaHenikoff, S. et al. | 2002
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ORIGINAL PAPERS - A Bayesian approach to discriminate between alternative DNA sequence segmentationsHusmeier, D. et al. | 2002
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ORIGINAL PAPERS - A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosisSebban, M. et al. | 2002
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ORIGINAL PAPERS - Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence datasetZhang, Z. et al. | 2002
- 251
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ORIGINAL PAPERS - Adjustments and measures of differential expression for microarray dataTsodikov, A. et al. | 2002
- 261
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ORIGINAL PAPERS - Probabilistic Boolean networks: A rule-based uncertainty model for gene regulatory networksShmulevich, I. et al. | 2002
- 275
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ORIGINAL PAPERS - Mixture modelling of gene expression data from microarray experimentsGhosh, D. et al. | 2002
- 287
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ORIGINAL PAPERS - Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modelingToh, H. et al. | 2002
- 298
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ORIGINAL PAPERS - Extensive feature detection of N-terminal protein sorting signalsBannai, H. et al. | 2002
- 306
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ORIGINAL PAPERS - Predicting reliable regions in protein sequence alignmentsCline, M. et al. | 2002
- 315
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ORIGINAL PAPERS - Models(commat)Home: Distributed computing in bioinformatics using a screensaver based approachKrieger, E. et al. | 2002
- 319
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APPLICATIONS NOTE - A cluster validity framework for genome expression dataAzuaje, R. et al. | 2002
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APPLICATIONS NOTE - Avoiding cross hybridization by choosing nonredundant targets on cDNA arraysNielsen, H.B. et al. | 2002
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APPLICATIONS NOTE - DRAGON View: Information visualization for annotated microarray dataBouton, C.M.L.S. et al. | 2002
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APPLICATIONS NOTE - CGO: Utilizing and integrating gene expression microarray data in clinical research and data managementBumm, K. et al. | 2002
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APPLICATIONS NOTE - ISEApeaks: An Excel platform for GeneScan and Immunoscope data retrieval, management and analysisCollette, A. et al. | 2002
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APPLICATIONS NOTE - INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif SamplingThijs, G. et al. | 2002
- 333
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APPLICATIONS NOTE - PROMO: Detection of known transcription regulatory elements using species-tailored searchesMesseguer, X. et al. | 2002
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APPLICATIONS NOTE - GenomePixelizer -- A visualization program for comparative genomics within and between speciesKozik, A. et al. | 2002
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APPLICATIONS NOTE - Generating samples under a Wright-Fisher neutral model of genetic variationHudson, R.R. et al. | 2002
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APPLICATIONS NOTE - QTL Express: Mapping quantitative trait loci in simple and complex pedigreesSeaton, G. et al. | 2002
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APPLICATIONS NOTE - PATRI -- Paternity inference using genetic dataSignorovitch, J. et al. | 2002
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GCB2000 PAPERS - Translation initiation start prediction in human cDNAs with high accuracyHatzigeorgiou, A.G. et al. | 2002
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GCB2000 PAPERS - Exploring the pathway structure of metabolism: Decomposition into subnetworks and application to Mycoplasma pneumoniaeSchuster, S. et al. | 2002
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GCB2000 PAPERS - Structure motif discovery and mining the PDBJonassen, I. et al. | 2002
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GCB2000 PAPERS - The EBI SRS server -- Recent developmentsZdobnov, E.M. et al. | 2002
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APPLICATIONS NOTE - Interactive InterPro-based comparisons of proteins in whole genomesKanapin, A. et al. | 2002
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Biological information: making it accessible and integrated (and trying to make sense of it)Hubbard, Tim et al. | 2013
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ECCB 2002 Organization| 2013
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An efficient and accurate distance based algorithm to reconstruct tandem duplication treesElemento, Olivier et al. | 2013
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A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosisSebban, M. et al. | 2013
-
Avoiding cross hybridization by choosing nonredundant targets on cDNA arraysNielsen, H. B. et al. | 2013
-
Beyond the central dogmaHenikoff, Steven et al. | 2013
-
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniaeSchuster, S. et al. | 2013
-
Identifying transcription factor binding sites through Markov chain optimizationEllrott, Kyle et al. | 2013
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GenomePixelizer--a visualization program for comparative genomics within and between speciesKozik, A. et al. | 2013
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Common intervals and sorting by reversals: a marriage of necessityBergeron, A. et al. | 2013
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Using robotics to fold proteins and dock ligandsBrutlag, Douglas et al. | 2013
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A Bayesian approach to discriminate between alternative DNA sequence segmentationsHusmeier, Dirk et al. | 2013
-
ISEApeaks: an Excel platform for GeneScan and Immunoscope data retrieval, management and analysisCollette, A. et al. | 2013
-
The EBI SRS server--recent developmentsZdobnov, Evgeni M. et al. | 2013
-
Interactive InterPro-based comparisons of proteins in whole genomesKanapin, A. et al. | 2013
-
Contextual alignment of biological sequences (Extended abstract)Gambin, Anna et al. | 2013
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Selecting targets for therapeutic validation through differential protein expression using chromatography-mass spectrometryPatterson, Scott et al. | 2013
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Detecting genomic features under weak selective pressure: the example of codon usage in animals and plantsDuret, Laurent et al. | 2013
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Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modelingToh, Hiroyuki et al. | 2013
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Proteome analysis based on motif statisticsNicodème, P. et al. | 2013
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An approximate matching algorithm for finding (sub-)optimal sequences in S-attributed grammarsWaldispühl, J. et al. | 2013
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Comparative analysis of protein interaction networksBork, Peer et al. | 2013
-
DRAGON View: information visualization for annotated microarray dataBouton, Christopher M. L. S. et al. | 2013
-
CGO: utilizing and integrating gene expression microarray data in clinical research and data managementBumm, Klaus et al. | 2013
-
QTL Express: mapping quantitative trait loci in simple and complex pedigreesSeaton, George et al. | 2013
-
Genome segmentation using piecewise constant intensity models and reversible jump MCMCSalmenkivi, Marko et al. | 2013
-
A new distance measure for comparing sequence profiles based on path lengths along an entropy surfaceBenson, Gary et al. | 2013
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Feature subset selection for splice site predictionDegroeve, Sven et al. | 2013
-
Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence datasetZhang, Zhengdong et al. | 2013
-
Mixture modelling of gene expression data from microarray experimentsGhosh, Debashis et al. | 2013
-
INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif SamplingThijs, Gert et al. | 2013
-
PROMO: detection of known transcription regulatory elements using species-tailored searchesMesseguer, Xavier et al. | 2013
-
An automatic block and spot indexing with k-nearest neighbors graph for microarray image analysisJung, Ho-Youl et al. | 2013
-
ProClust: improved clustering of protein sequences with an extended graph-based approachPipenbacher, P. et al. | 2013
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Principles of protein-protein interactionsTeichmann, Sarah A. et al. | 2013
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Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatoricsAlthaus, Ernst et al. | 2013
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This section is devoted to papers presented at the GCB00 (German Conference on Bioinformatics), the Annual, International Conference on Computational Biosciences covering computational molecular biology and adjoining fields. Heidelberg, October 5-7, 2000.| 2002
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Generating samples under a Wright-Fisher neutral model of genetic variationHudson, Richard R. et al. | 2013
-
EditorialLengauer, Thomas et al. | 2013
-
The mutual information: Detecting and evaluating dependencies between variablesSteuer, R. et al. | 2013
-
Predicting reliable regions in protein sequence alignmentsCline, Melissa et al. | 2013
-
Structure motif discovery and mining the PDBJonassen, Inge et al. | 2013
-
Breakpoint medians and breakpoint phylogenies: A fixed-parameter approachGramm, Jens et al. | 2013
-
Adjustments and measures of differential expression for microarray dataTsodikov, A. et al. | 2013
-
Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networksShmulevich, Ilya et al. | 2013
-
Models@Home: distributed computing in bioinformatics using a screensaver based approachKrieger, Elmar et al. | 2013
-
A cluster validity framework for genome expression dataAzuaje, F. et al. | 2013
-
Tclass: tumor classification system based on gene expression profileWuju, Li et al. | 2013
-
PATRI--paternity inference using genetic dataSignorovitch, J. et al. | 2013
-
Building and analysing genome-wide gene disruption networksRung, J. et al. | 2013
-
Application of metabolomics to plant genotype discrimination using statistics and machine learningTaylor, Janet et al. | 2013
-
Estonian Genome Project--before the take-off and take-offMetspalu, Andres et al. | 2013
-
Stochastic pairwise alignmentsMückstein, U. et al. | 2013
-
BioMiner--modeling, analyzing, and visualizing biochemical pathways and networksSirava, M. et al. | 2013
-
Automated annotation of keywords for proteins related to mycoplasmataceae using machine learning techniquesBazzan, Ana L.C. et al. | 2013
-
Modeling splicing sites with pairwise correlationsArita, Masanori et al. | 2013
-
Extensive feature detection of N-terminal protein sorting signalsBannai, Hideo et al. | 2013
-
Translation initiation start prediction in human cDNAs with high accuracyHatzigeorgiou, Artemis G. et al. | 2013
-
Comparative genomics of microbial pathogens and symbiontsAndersson, Siv G.E. et al. | 2013
-
Correlating gene promoters and expression in gene disruption experimentsPalin, Kimmo et al. | 2013
-
Stochastic roadmap simulation for the study of ligand-protein interactionsApaydin, Mehmet Serkan et al. | 2013
-
Building an automated classification of DNA-binding protein domainsPonomarenko, Julia V. et al. | 2013
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Theoretical analysis of alternative splice forms using computational methodsBoué, Stéphanie et al. | 2013