The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function (Englisch)
Freier Zugriff
- Neue Suche nach: Warde-Farley, David
- Neue Suche nach: Donaldson, Sylva L.
- Neue Suche nach: Comes, Ovi
- Neue Suche nach: Zuberi, Khalid
- Neue Suche nach: Badrawi, Rashad
- Neue Suche nach: Chao, Pauline
- Neue Suche nach: Franz, Max
- Neue Suche nach: Grouios, Chris
- Neue Suche nach: Kazi, Farzana
- Neue Suche nach: Lopes, Christian Tannus
- Neue Suche nach: Maitland, Anson
- Neue Suche nach: Mostafavi, Sara
- Neue Suche nach: Montojo, Jason
- Neue Suche nach: Shao, Quentin
- Neue Suche nach: Wright, George
- Neue Suche nach: Bader, Gary D.
- Neue Suche nach: Morris, Quaid
- Neue Suche nach: Warde-Farley, David
- Neue Suche nach: Donaldson, Sylva L.
- Neue Suche nach: Comes, Ovi
- Neue Suche nach: Zuberi, Khalid
- Neue Suche nach: Badrawi, Rashad
- Neue Suche nach: Chao, Pauline
- Neue Suche nach: Franz, Max
- Neue Suche nach: Grouios, Chris
- Neue Suche nach: Kazi, Farzana
- Neue Suche nach: Lopes, Christian Tannus
- Neue Suche nach: Maitland, Anson
- Neue Suche nach: Mostafavi, Sara
- Neue Suche nach: Montojo, Jason
- Neue Suche nach: Shao, Quentin
- Neue Suche nach: Wright, George
- Neue Suche nach: Bader, Gary D.
- Neue Suche nach: Morris, Quaid
In:
Nucleic acids research
;
38
, suppl_2
;
W214-
;
2010
- Aufsatz (Zeitschrift) / Elektronische Ressource
-
Titel:The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
-
Beteiligte:Warde-Farley, David ( Autor:in ) / Donaldson, Sylva L. ( Autor:in ) / Comes, Ovi ( Autor:in ) / Zuberi, Khalid ( Autor:in ) / Badrawi, Rashad ( Autor:in ) / Chao, Pauline ( Autor:in ) / Franz, Max ( Autor:in ) / Grouios, Chris ( Autor:in ) / Kazi, Farzana ( Autor:in ) / Lopes, Christian Tannus ( Autor:in )
-
Erschienen in:Nucleic acids research ; 38, suppl_2 ; W214-
-
Verlag:
- Neue Suche nach: Oxford University Press
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Erscheinungsdatum:01.07.2010
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ISSN:
-
DOI:
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Medientyp:Aufsatz (Zeitschrift)
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Format:Elektronische Ressource
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Sprache:Englisch
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Datenquelle:
Inhaltsverzeichnis – Band 38, Ausgabe suppl_2
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Nucleic Acids Research: VOLUME 38 WEB SERVER ISSUE JULY 1, 2010| 2010
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Nucleic Acids Research| 2010
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The EMBRACE web service collectionPettifer, Steve / Ison, Jon / Kalas, Matús / Thorne, Dave / McDermott, Philip / Jonassen, Inge / Liaquat, Ali / Fernández, José M. / Rodriguez, Jose M. / Partners, INB- et al. | 2010
- W689
-
BioCatalogue: a universal catalogue of web services for the life sciencesBhagat, Jiten / Tanoh, Franck / Nzuobontane, Eric / Laurent, Thomas / Orlowski, Jerzy / Roos, Marco / Wolstencroft, Katy / Aleksejevs, Sergejs / Stevens, Robert / Pettifer, Steve et al. | 2010
- W695
-
A new bioinformatics analysis tools framework at EMBL-EBIGoujon, Mickael / McWilliam, Hamish / Li, Weizhong / Valentin, Franck / Squizzato, Silvano / Paern, Juri / Lopez, Rodrigo et al. | 2010
- W700
-
G-language genome analysis environment with REST and SOAP web service interfacesArakawa, Kazuharu / Kido, Nobuhiro / Oshita, Kazuki / Tomita, Masaru et al. | 2010
- W706
-
TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web servicesKatayama, Toshiaki / Nakao, Mitsuteru / Takagi, Toshihisa et al. | 2010
- W712
-
IBWS: IST Bioinformatics Web ServicesZappa, Achille / Miele, Mariangela / Romano, Paolo et al. | 2010
- W719
-
WIWS: a protein structure bioinformatics Web service collectionHekkelman, M. L. / te Beek, T. A. H. / Pettifer, S. R. / Thorne, D. / Attwood, T. K. / Vriend, G. et al. | 2010
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-
Opal web services for biomedical applicationsRen, Jingyuan / Williams, Nadya / Clementi, Luca / Krishnan, Sriram / Li, Wilfred W. et al. | 2010
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-
MagicViewer: integrated solution for next-generation sequencing data visualization and genetic variation detection and annotationHou, Huabin / Zhao, Fangqing / Zhou, LingLin / Zhu, Erle / Teng, Huajing / Li, Xiaokun / Bao, Qiyu / Wu, Jinyu / Sun, Zhongsheng et al. | 2010
- W737
-
PEACE: Parallel Environment for Assembly and Clustering of Gene ExpressionRao, D. M. / Moler, J. C. / Ozden, M. / Zhang, Y. / Liang, C. / Karro, J. E. et al. | 2010
- W743
-
ZOOM Lite: next-generation sequencing data mapping and visualization softwareZhang, Zefeng / Lin, Hao / Ma, Bin et al. | 2010
- W749
-
GSA-SNP: a general approach for gene set analysis of polymorphismsNam, Dougu / Kim, Jin / Kim, Seon-Young / Kim, Sangsoo et al. | 2010
- W755
-
AltAnalyze and DomainGraph: analyzing and visualizing exon expression dataEmig, Dorothea / Salomonis, Nathan / Baumbach, Jan / Lengauer, Thomas / Conklin, Bruce R. / Albrecht, Mario et al. | 2010