LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets (Englisch)
Freier Zugriff
- Neue Suche nach: Wilm, Andreas
- Neue Suche nach: Aw, Pauline Poh Kim
- Neue Suche nach: Bertrand, Denis
- Neue Suche nach: Yeo, Grace Hui Ting
- Neue Suche nach: Ong, Swee Hoe
- Neue Suche nach: Wong, Chang Hua
- Neue Suche nach: Khor, Chiea Chuen
- Neue Suche nach: Petric, Rosemary
- Neue Suche nach: Hibberd, Martin Lloyd
- Neue Suche nach: Nagarajan, Niranjan
- Neue Suche nach: Wilm, Andreas
- Neue Suche nach: Aw, Pauline Poh Kim
- Neue Suche nach: Bertrand, Denis
- Neue Suche nach: Yeo, Grace Hui Ting
- Neue Suche nach: Ong, Swee Hoe
- Neue Suche nach: Wong, Chang Hua
- Neue Suche nach: Khor, Chiea Chuen
- Neue Suche nach: Petric, Rosemary
- Neue Suche nach: Hibberd, Martin Lloyd
- Neue Suche nach: Nagarajan, Niranjan
In:
Nucleic acids research
;
40
, 22
;
11189-
;
2012
- Aufsatz (Zeitschrift) / Elektronische Ressource
-
Titel:LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
-
Beteiligte:Wilm, Andreas ( Autor:in ) / Aw, Pauline Poh Kim ( Autor:in ) / Bertrand, Denis ( Autor:in ) / Yeo, Grace Hui Ting ( Autor:in ) / Ong, Swee Hoe ( Autor:in ) / Wong, Chang Hua ( Autor:in ) / Khor, Chiea Chuen ( Autor:in ) / Petric, Rosemary ( Autor:in ) / Hibberd, Martin Lloyd ( Autor:in ) / Nagarajan, Niranjan ( Autor:in )
-
Erschienen in:Nucleic acids research ; 40, 22 ; 11189-
-
Verlag:
- Neue Suche nach: Oxford University Press
-
Erscheinungsdatum:01.12.2012
-
ISSN:
-
DOI:
-
Medientyp:Aufsatz (Zeitschrift)
-
Format:Elektronische Ressource
-
Sprache:Englisch
-
Datenquelle:
Inhaltsverzeichnis – Band 40, Ausgabe 22
Zeige alle Jahrgänge und Ausgaben
Die Inhaltsverzeichnisse werden automatisch erzeugt und basieren auf den im Index des TIB-Portals verfügbaren Einzelnachweisen der enthaltenen Beiträge. Die Anzeige der Inhaltsverzeichnisse kann daher unvollständig oder lückenhaft sein.
- 11173
-
NAR Awards 2012| 2012
- 11173
-
Editorial: NAR Awards 2012| 2012
- 11178
-
Transcription in the maintenance of centromere chromatin identityChan, F. Lyn / Wong, Lee H. et al. | 2012
- 11189
-
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasetsWilm, Andreas / Aw, Pauline Poh Kim / Bertrand, Denis / Yeo, Grace Hui Ting / Ong, Swee Hoe / Wong, Chang Hua / Khor, Chiea Chuen / Petric, Rosemary / Hibberd, Martin Lloyd / Nagarajan, Niranjan et al. | 2012
- 11202
-
Self-organization of domain structures by DNA-loop-extruding enzymesAlipour, Elnaz / Marko, John F. et al. | 2012
- 11213
-
A multipronged strategy of an anti-terminator protein to overcome Rho-dependent transcription terminationMuteeb, Ghazala / Dey, Debashish / Mishra, Saurabh / Sen, Ranjan et al. | 2012
- 11229
-
CAF-1-induced oligomerization of histones H3/H4 and mutually exclusive interactions with Asf1 guide H3/H4 transitions among histone chaperones and DNALiu, Wallace H. / Roemer, Sarah C. / Port, Alex M. / Churchill, Mair E. A. et al. | 2012
- 11240
-
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thalianaStreitner, Corinna / Köster, Tino / Simpson, Craig G. / Shaw, Paul / Danisman, Selahattin / Brown, John W. S. / Staiger, Dorothee et al. | 2012
- 11256
-
LCR 5' hypersensitive site specificity for globin gene activation within the active chromatin hubPeterson, Kenneth R. / Fedosyuk, Halyna / Harju-Baker, Susanna et al. | 2012
- 11270
-
Mechanism of allele-selective inhibition of huntingtin expression by duplex RNAs that target CAG repeats: function through the RNAi pathwayHu, Jiaxin / Liu, Jing / Yu, Dongbo / Chu, Yongjun / Corey, David R. et al. | 2012
- 11281
-
Distinct contributions of MSL complex subunits to the transcriptional enhancement responsible for dosage compensation in DrosophilaDunlap, David / Yokoyama, Ruth / Ling, Huiping / Sun, He-Ying / McGill, Kerry / Cugusi, Simona / Lucchesi, John C. et al. | 2012
- 11292
-
LtmA, a novel cyclic di-GMP-responsive activator, broadly regulates the expression of lipid transport and metabolism genes in Mycobacterium smegmatisLi, Weihui / He, Zheng-Guo et al. | 2012
- 11308
-
Pr is a member of a restricted class of {sigma}70-dependent promoters that lack a recognizable -10 elementdel Peso-Santos, Teresa / Landfors, Mattias / Skärfstad, Eleonore / Ryden, Patrik / Shingler, Victoria et al. | 2012
- 11321
-
Suppression and recovery of BRCA1-mediated transcription by HP1{gamma} via modulation of promoter occupancyChoi, Jae Duk / Park, Mi Ae / Lee, Jong-Soo et al. | 2012
- 11339
-
A global DNA methylation and gene expression analysis of early human B-cell development reveals a demethylation signature and transcription factor networkLee, Seung-Tae / Xiao, Yuanyuan / Muench, Marcus O. / Xiao, Jianqiao / Fomin, Marina E. / Wiencke, John K. / Zheng, Shichun / Dou, Xiaoqin / de Smith, Adam / Chokkalingam, Anand et al. | 2012
- 11352
-
RNA polymerase-promoter interactions determining different stability of the Escherichia coli and Thermus aquaticus transcription initiation complexesMekler, Vladimir / Minakhin, Leonid / Kuznedelov, Konstantin / Mukhamedyarov, Damir / Severinov, Konstantin et al. | 2012
- 11363
-
SPOC1 modulates DNA repair by regulating key determinants of chromatin compaction and DNA damage responseMund, Andreas / Schubert, Tobias / Staege, Hannah / Kinkley, Sarah / Reumann, Kerstin / Kriegs, Malte / Fritsch, Lauriane / Battisti, Valentine / Ait-Si-Ali, Slimane / Hoffbeck, Anne-Sophie et al. | 2012
- 11380
-
A SUMO-interacting motif activates budding yeast ubiquitin ligase Rad18 towards SUMO-modified PCNAParker, Joanne L. / Ulrich, Helle D. et al. | 2012
- 11389
-
DNA-binding determinants promoting NHEJ by human PolμMartin, M.J. / Juarez, R. / Blanco, L. et al. | 2012
- 11389
-
DNA-binding determinants promoting NHEJ by human Pol{micro}Martin, Maria Jose / Juarez, Raquel / Blanco, Luis et al. | 2012
- 11404
-
Phosphorylation of PNKP by ATM prevents its proteasomal degradation and enhances resistance to oxidative stressParsons, Jason L. / Khoronenkova, Svetlana V. / Dianova, Irina I. / Ternette, Nicola / Kessler, Benedikt M. / Datta, Pran K. / Dianov, Grigory L. et al. | 2012
- 11416
-
Mek1 stabilizes Hop1-Thr318 phosphorylation to promote interhomolog recombination and checkpoint responses during yeast meiosisChuang, Chi-Ning / Cheng, Yun-Hsin / Wang, Ting-Fang et al. | 2012
- 11428
-
DNA catenation maintains structure of human metaphase chromosomesBauer, David L. V. / Marie, Rodolphe / Rasmussen, Kristian H. / Kristensen, Anders / Mir, Kalim U. et al. | 2012
- 11435
-
Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repairLimbo, Oliver / Moiani, Davide / Kertokalio, Aryandi / Wyman, Claire / Tainer, John A. / Russell, Paul et al. | 2012
- 11450
-
The methylomes of six bacteriaMurray, Iain A. / Clark, Tyson A. / Morgan, Richard D. / Boitano, Matthew / Anton, Brian P. / Luong, Khai / Fomenkov, Alexey / Turner, Stephen W. / Korlach, Jonas / Roberts, Richard J. et al. | 2012
- 11463
-
Hundreds of conserved non-coding genomic regions are independently lost in mammalsHiller, Michael / Schaar, Bruce T. / Bejerano, Gill et al. | 2012
- 11477
-
Telomere length homeostasis and telomere position effect on a linear human artificial chromosome are dictated by the genetic backgroundWeuts, An / Voet, Thierry / Verbeeck, Jelle / Lambrechts, Nathalie / Wirix, Evelyne / Schoonjans, Luc / Danloy, Sophie / Marynen, Peter / Froyen, Guy et al. | 2012
- 11490
-
Evaluation of single CpG sites as proxies of CpG island methylation states at the genome scaleBarrera, Víctor / Peinado, Miguel A. et al. | 2012
- 11499
-
Genome-wide analysis of FoxO1 binding in hepatic chromatin: Potential involvement of FoxO1 in linking retinoid signaling to hepatic gluconeogenesisShin, Dong-Ju / Joshi, Pujan / Hong, Seung-Hyun / Mosure, Kathleen / Shin, Dong-Guk / Osborne, Timothy F. et al. | 2012
- 11510
-
Binding of hairpin pyrrole and imidazole polyamides to DNA: relationship between torsion angle and association rate constantsHan, Yong-Woon / Matsumoto, Tomoko / Yokota, Hiroaki / Kashiwazaki, Gengo / Morinaga, Hironobu / Hashiya, Kaori / Bando, Toshikazu / Harada, Yoshie / Sugiyama, Hiroshi et al. | 2012
- 11518
-
HRP2 determines the efficiency and specificity of HIV-1 integration in LEDGF/p75 knockout cells but does not contribute to the antiviral activity of a potent LEDGF/p75-binding site integrase inhibitorWang, Hao / Jurado, Kellie A. / Wu, Xiaolin / Shun, Ming-Chieh / Li, Xiang / Ferris, Andrea L. / Smith, Steven J. / Patel, Pratiq A. / Fuchs, James R. / Cherepanov, Peter et al. | 2012
- 11531
-
RNA-binding protein AUF1 represses Dicer expressionAbdelmohsen, Kotb / Tominaga-Yamanaka, Kumiko / Srikantan, Subramanya / Yoon, Je-Hyun / Kang, Min-Ju / Gorospe, Myriam et al. | 2012
- 11545
-
The C-terminus of Dpb2 is required for interaction with Pol2 and for cell viabilityIsoz, Isabelle / Persson, Ulf / Volkov, Kirill / Johansson, Erik et al. | 2012
- 11554
-
Demethylation initiated by ROS1 glycosylase involves random sliding along DNAPonferrada-Marín, María Isabel / Roldán-Arjona, Teresa / Ariza, Rafael R. et al. | 2012
- 11563
-
Sequence-specific cleavage of the RNA strand in DNA-RNA hybrids by the fusion of ribonuclease H with a zinc fingerSulej, Agata A. / Tuszynska, Irina / Skowronek, Krzysztof J. / Nowotny, Marcin / Bujnicki, Janusz M. et al. | 2012
- 11571
-
Pol {beta} associated complex and base excision repair factors in mouse fibroblastsPrasad, Rajendra / Williams, Jason G. / Hou, Esther W. / Wilson, Samuel H. et al. | 2012
- 11583
-
A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase--extensive moonlighting in mitochondrial tRNA biogenesisVilardo, Elisa / Nachbagauer, Christa / Buzet, Aurélie / Taschner, Andreas / Holzmann, Johann / Rossmanith, Walter et al. | 2012
- 11594
-
Engineering the DNA cytosine-5 methyltransferase reaction for sequence-specific labeling of DNALukinavicius, Grazvydas / Lapinaite, Audrone / Urbanaviciute, Giedre / Gerasimaite, Ruta / Klimasauskas, Saulius et al. | 2012
- 11603
-
Regulation of human Dicer by the resident ER membrane protein CLIMP-63Pépin, Geneviève / Perron, Marjorie P. / Provost, Patrick et al. | 2012
- 11618
-
A four-subunit DNA polymerase {zeta} complex containing Pol {delta} accessory subunits is essential for PCNA-mediated mutagenesisMakarova, Alena V. / Stodola, Joseph L. / Burgers, Peter M. et al. | 2012
- 11618
-
A four-subunit DNA polymerase ζ complex containing Pol delta accessory subunits is essential for PCNA-mediated mutagenesisMakarova, A.V. / Stodola, J.L. / Burgers, P.M. et al. | 2012
- 11627
-
Evolutionary transitions to new DNA methyltransferases through target site expansion and shrinkageRockah-Shmuel, Liat / Tawfik, Dan S. et al. | 2012
- 11638
-
Defining the functional footprint for recognition and repair of deaminated DNABaldwin, Michael R. / OBrien, Patrick J. et al. | 2012
- 11648
-
Pmt1, a Dnmt2 homolog in Schizosaccharomyces pombe, mediates tRNA methylation in response to nutrient signalingBecker, Maria / Müller, Sara / Nellen, Wolfgang / Jurkowski, Tomasz P. / Jeltsch, Albert / Ehrenhofer-Murray, Ann E. et al. | 2012
- 11659
-
SR1--a small RNA with two remarkably conserved functionsGimpel, Matthias / Preis, Heike / Barth, Emanuel / Gramzow, Lydia / Brantl, Sabine et al. | 2012
- 11673
-
miRmap: Comprehensive prediction of microRNA target repression strengthVejnar, Charles E. / Zdobnov, Evgeny M. et al. | 2012
- 11684
-
The extent of sequence complementarity correlates with the potency of cellular miRNA-mediated restriction of HIV-1Houzet, Laurent / Klase, Zachary / Yeung, Man Lung / Wu, Annie / Le, Shu-Yun / Quiñones, Mariam / Jeang, Kuan-Teh et al. | 2012
- 11697
-
The folding of the hepatitis C virus internal ribosome entry site depends on the 3'-end of the viral genomeRomero-López, Cristina / Barroso-delJesus, Alicia / García-Sacristán, Ana / Briones, Carlos / Berzal-Herranz, Alfredo et al. | 2012
- 11714
-
The novel long non-coding RNA CRG regulates Drosophila locomotor behaviorLi, Meixia / Wen, Shengyun / Guo, Xiangqian / Bai, Baoyan / Gong, Zhefeng / Liu, Xiaojun / Wang, Yijin / Zhou, Yanqiong / Chen, Xiaowei / Liu, Li et al. | 2012
- 11728
-
Direct quantitative analysis of HCV RNA by atomic force microscopy without labeling or amplificationJung, Yu Jin / Albrecht, Jeffrey A. / Kwak, Ju-Won / Park, Joon Won et al. | 2012
- 11737
-
A minimal i-motif stabilized by minor groove G:T:G:T tetradsEscaja, Núria / Viladoms, Júlia / Garavís, Miguel / Villasante, Alfredo / Pedroso, Enrique / González, Carlos et al. | 2012
- 11748
-
Recognition of asymmetrically dimethylated arginine by TDRD3Sikorsky, Tomas / Hobor, Fruzsina / Krizanova, Eva / Pasulka, Josef / Kubicek, Karel / Stefl, Richard et al. | 2012
- 11756
-
AIRE-PHD fingers are structural hubs to maintain the integrity of chromatin-associated interactomeGaetani, Massimiliano / Matafora, Vittoria / Saare, Mario / Spiliotopoulos, Dimitrios / Mollica, Luca / Quilici, Giacomo / Chignola, Francesca / Mannella, Valeria / Zucchelli, Chiara / Peterson, Pärt et al. | 2012
- 11769
-
Probing Rad51-DNA interactions by changing DNA twistAtwell, Scott / Disseau, Ludovic / Stasiak, Alicja Z. / Stasiak, Andrzej / Renodon-Cornière, Axelle / Takahashi, Masayuki / Viovy, Jean-Louis / Cappello, Giovanni et al. | 2012
- 11777
-
Selection is more intelligent than design: improving the affinity of a bivalent ligand through directed evolutionAhmad, Kareem M. / Xiao, Yi / Soh, H. Tom et al. | 2012
- e170
-
Manipulating replisome dynamics to enhance lambda Red-mediated multiplex genome engineeringLajoie, M. J. / Gregg, C. J. / Mosberg, J. A. / Washington, G. C. / Church, G. M. et al. | 2012
- e171
-
Compression of next-generation sequencing reads aided by highly efficient de novo assemblyJones, Daniel C. / Ruzzo, Walter L. / Peng, Xinxia / Katze, Michael G. et al. | 2012
- e172
-
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related speciesFouts, Derrick E. / Brinkac, Lauren / Beck, Erin / Inman, Jason / Sutton, Granger et al. | 2012
- e173
-
Antisense morpholino targeting just upstream from a poly(A) tail junction of maternal mRNA removes the tail and inhibits translationWada, Tadashi / Hara, Masatoshi / Taneda, Takuya / Qingfu, Cao / Takata, Ryouhei / Moro, Kanako / Takeda, Kei / Kishimoto, Takeo / Handa, Hiroshi et al. | 2012
- e174
-
OASIS: an automated program for global investigation of bacterial and archaeal insertion sequencesRobinson, David G. / Lee, Ming-Chun / Marx, Christopher J. et al. | 2012
- e175
-
Improved predictions of transcription factor binding sites using physicochemical features of DNAMaienschein-Cline, Mark / Dinner, Aaron R. / Hlavacek, William S. / Mu, Fangping et al. | 2012
- e176
-
Targeted manipulation of heterochromatin rescues MeCP2 Rett mutants and re-establishes higher order chromatin organizationCasas-Delucchi, Corella S. / Becker, Annette / Bolius, Janine J. / Cardoso, M. Cristina et al. | 2012
- i
-
Nucleic Acids Research: VOLUME 40 ISSUE 22 2012| 2012
- ii
-
Nucleic Acids Research - Editorial Board| 2012
- iii
-
Subscriptions| 2012