RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics (Englisch)
Freier Zugriff
- Neue Suche nach: Lohse, Marc
- Neue Suche nach: Bolger, Anthony M.
- Neue Suche nach: Nagel, Axel
- Neue Suche nach: Fernie, Alisdair R.
- Neue Suche nach: Lunn, John E.
- Neue Suche nach: Stitt, Mark
- Neue Suche nach: Usadel, Björn
- Neue Suche nach: Lohse, Marc
- Neue Suche nach: Bolger, Anthony M.
- Neue Suche nach: Nagel, Axel
- Neue Suche nach: Fernie, Alisdair R.
- Neue Suche nach: Lunn, John E.
- Neue Suche nach: Stitt, Mark
- Neue Suche nach: Usadel, Björn
In:
Nucleic acids research
;
40
, W1
;
W622-
;
2012
- Aufsatz (Zeitschrift) / Elektronische Ressource
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Titel:RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
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Beteiligte:Lohse, Marc ( Autor:in ) / Bolger, Anthony M. ( Autor:in ) / Nagel, Axel ( Autor:in ) / Fernie, Alisdair R. ( Autor:in ) / Lunn, John E. ( Autor:in ) / Stitt, Mark ( Autor:in ) / Usadel, Björn ( Autor:in )
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Erschienen in:Nucleic acids research ; 40, W1 ; W622-
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Verlag:
- Neue Suche nach: Oxford University Press
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Erscheinungsdatum:01.07.2012
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ISSN:
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DOI:
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Medientyp:Aufsatz (Zeitschrift)
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Format:Elektronische Ressource
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Sprache:Englisch
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Datenquelle:
Inhaltsverzeichnis – Band 40, Ausgabe W1
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Nucleic Acids Research: VOLUME 40 WEB SERVER ISSUE JULY 1, 2012| 2012
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Nucleic Acids Research - Editorial Board| 2012
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Subscriptions| 2012
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EditorialBenson, Gary et al. | 2012
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A decade of web server updates at the bioinformatics links directory: 2003-2012Brazas, Michelle D. / Yim, David / Yeung, Winston / Ouellette, B. F. Francis et al. | 2012
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MAGIA2: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update)Bisognin, Andrea / Sales, Gabriele / Coppe, Alessandro / Bortoluzzi, Stefania / Romualdi, Chiara et al. | 2012
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Rtips: fast and accurate tools for RNA 2D structure prediction using integer programmingKato, Yuki / Sato, Kengo / Asai, Kiyoshi / Akutsu, Tatsuya et al. | 2012
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NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA moleculesHamdani, Hazrina Y. / Appasamy, Sri D. / Willett, Peter / Artymiuk, Peter J. / Firdaus-Raih, Mohd et al. | 2012
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SETTER: web server for RNA structure comparisonCech, Petr / Svozil, Daniel / Hoksza, David et al. | 2012
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CARNA--alignment of RNA structure ensemblesSorescu, Dragos Alexandru / Möhl, Mathias / Mann, Martin / Backofen, Rolf / Will, Sebastian et al. | 2012
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VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation SequencingMedina, Ignacio / De Maria, Alejandro / Bleda, Marta / Salavert, Francisco / Alonso, Roberto / Gonzalez, Cristina Y. / Dopazo, Joaquin et al. | 2012
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SAVoR: a server for sequencing annotation and visualization of RNA structuresLi, Fan / Ryvkin, Paul / Childress, Daniel M. / Valladares, Otto / Gregory, Brian D. / Wang, Li-San et al. | 2012
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SNPnexus: a web server for functional annotation of novel and publicly known genetic variants (2012 update)Dayem Ullah, Abu Z. / Lemoine, Nicholas R. / Chelala, Claude et al. | 2012
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KD4v: comprehensible knowledge discovery system for missense variantLuu, Tien-Dao / Rusu, Alin / Walter, Vincent / Linard, Benjamin / Poidevin, Laetitia / Ripp, Raymond / Moulinier, Luc / Muller, Jean / Raffelsberger, Wolfgang / Wicker, Nicolas et al. | 2012
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VarioWatch: providing large-scale and comprehensive annotations on human genomic variants in the next generation sequencing eraCheng, Yu-Chang / Hsiao, Fang-Chih / Yeh, Erh-Chan / Lin, Wan-Jia / Tang, Cheng-Yang Louis / Tseng, Huan-Chin / Wu, Hsing-Tsung / Liu, Chuan-Kun / Chen, Chih-Cheng / Chen, Yuan-Tsong et al. | 2012
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TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverageBrandt, Bernd W. / Bonder, Marc J. / Huse, Susan M. / Zaura, Egija et al. | 2012
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METAGENassist: a comprehensive web server for comparative metagenomicsArndt, David / Xia, Jianguo / Liu, Yifeng / Zhou, You / Guo, An Chi / Cruz, Joseph A. / Sinelnikov, Igor / Budwill, Karen / Nesbø, Camilla L. / Wishart, David S. et al. | 2012
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QGRS-H Predictor: a web server for predicting homologous quadruplex forming G-rich sequence motifs in nucleotide sequencesMenendez, Camille / Frees, Scott / Bagga, Paramjeet S. et al. | 2012
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The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequencesLuehr, Sebastian / Hartmann, Holger / Söding, Johannes et al. | 2012
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LAHEDES: the LAGLIDADG homing endonuclease database and engineering serverTaylor, Gregory K. / Petrucci, Lucas H. / Lambert, Abigail R. / Baxter, Sarah K. / Jarjour, Jordan / Stoddard, Barry L. et al. | 2012
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TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target predictionDoyle, Erin L. / Booher, Nicholas J. / Standage, Daniel S. / Voytas, Daniel F. / Brendel, Volker P. / VanDyk, John K. / Bogdanove, Adam J. et al. | 2012
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MetaboAnalyst 2.0--a comprehensive server for metabolomic data analysisXia, Jianguo / Mandal, Rupasri / Sinelnikov, Igor V. / Broadhurst, David / Wishart, David S. et al. | 2012
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IntScore: a web tool for confidence scoring of biological interactionsKamburov, Atanas / Stelzl, Ulrich / Herwig, Ralf et al. | 2012
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BIPS: BIANA Interolog Prediction Server. A tool for protein-protein interaction inferenceGarcia-Garcia, Javier / Schleker, Sylvia / Klein-Seetharaman, Judith / Oliva, Baldo et al. | 2012
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MAGNET: MicroArray Gene expression and Network Evaluation ToolkitLinderman, George C. / Chance, Mark R. / Bebek, Gurkan et al. | 2012
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NetAligner--a network alignment server to compare complexes, pathways and whole interactomesPache, Roland A. / Céol, Arnaud / Aloy, Patrick et al. | 2012
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GENIES: gene network inference engine based on supervised analysisKotera, Masaaki / Yamanishi, Yoshihiro / Moriya, Yuki / Kanehisa, Minoru / Goto, Susumu et al. | 2012
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DBD2BS: connecting a DNA-binding protein with its binding sitesChien, Ting-Ying / Lin, Chih-Kang / Lin, Chih-Wei / Weng, Yi-Zhong / Chen, Chien-Yu / Chang, Darby Tien-Hao et al. | 2012
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VIGOR extended to annotate genomes for additional 12 different virusesWang, Shiliang / Sundaram, Jaideep P. / Stockwell, Timothy B. et al. | 2012
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jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virusSchultz, Anne-Kathrin / Bulla, Ingo / Abdou-Chekaraou, Mariama / Gordien, Emmanuel / Morgenstern, Burkhard / Zoulim, Fabien / Dény, Paul / Stanke, Mario et al. | 2012
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ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteinsKonc, Janez / Janezic, Dusanka et al. | 2012
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MOLEonline 2.0: interactive web-based analysis of biomacromolecular channelsBerka, Karel / Hanák, Ondrej / Sehnal, David / Banás, Pavel / Navrátilová, Veronika / Jaiswal, Deepti / Ionescu, Crina-Maria / Svobodová Vareková, Radka / Koca, Jaroslav / Otyepka, Michal et al. | 2012
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pKNOT v.2: the protein KNOT web serverLai, Yan-Long / Chen, Chih-Chieh / Hwang, Jenn-Kang et al. | 2012
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CPred: a web server for predicting viable circular permutations in proteinsLo, Wei-Cheng / Wang, Li-Fen / Liu, Yen-Yi / Dai, Tian / Hwang, Jenn-Kang / Lyu, Ping-Chiang et al. | 2012
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BioShell Threader: protein homology detection based on sequence profiles and secondary structure profilesGront, Dominik / Blaszczyk, Maciej / Wojciechowski, Piotr / Kolinski, Andrzej et al. | 2012
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MoNetFamily: a web server to infer homologous modules and module-module interaction networks in vertebratesLin, Chun-Yu / Lin, Yi-Wei / Yu, Shang-Wen / Lo, Yu-Shu / Yang, Jinn-Moon et al. | 2012
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FTMAP: extended protein mapping with user-selected probe moleculesNgan, Chi Ho / Bohnuud, Tanggis / Mottarella, Scott E. / Beglov, Dmitri / Villar, Elizabeth A. / Hall, David R. / Kozakov, Dima / Vajda, Sandor et al. | 2012
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GalaxyWEB server for protein structure prediction and refinementKo, Junsu / Park, Hahnbeom / Heo, Lim / Seok, Chaok et al. | 2012
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CSA: comprehensive comparison of pairwise protein structure alignmentsWohlers, Inken / Malod-Dognin, Noël / Andonov, Rumen / Klau, Gunnar W. et al. | 2012
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NMSim Web Server: integrated approach for normal mode-based geometric simulations of biologically relevant conformational transitions in proteinsKrüger, Dennis M. / Ahmed, Aqeel / Gohlke, Holger et al. | 2012
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PredyFlexy: flexibility and local structure prediction from sequencede Brevern, Alexandre G. / Bornot, Aurélie / Craveur, Pierrick / Etchebest, Catherine / Gelly, Jean-Christophe et al. | 2012
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KoBaMIN: a knowledge-based minimization web server for protein structure refinementRodrigues, João P. G. L. M. / Levitt, Michael / Chopra, Gaurav et al. | 2012
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CMWeb: an interactive on-line tool for analysing residue-residue contacts and contact prediction methodsKozma, Dániel / Simon, István / Tusnády, Gábor E. et al. | 2012
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Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bankCollier, James H. / Lesk, Arthur M. / Garcia de la Banda, Maria / Konagurthu, Arun S. et al. | 2012
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SeqFIRE: a web application for automated extraction of indel regions and conserved blocks from protein multiple sequence alignmentsAjawatanawong, Pravech / Atkinson, Gemma C. / Watson-Haigh, Nathan S. / MacKenzie, Bryony / Baldauf, Sandra L. et al. | 2012
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Protein frustratometer: a tool to localize energetic frustration in protein moleculesJenik, Michael / Parra, R. Gonzalo / Radusky, Leandro G. / Turjanski, Adrian / Wolynes, Peter G. / Ferreiro, Diego U. et al. | 2012
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IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networksWong, Aaron K. / Park, Christopher Y. / Greene, Casey S. / Bongo, Lars A. / Guan, Yuanfang / Troyanskaya, Olga G. et al. | 2012
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