91 Kinetics of DNA overstretching: melting vs. B-to-S transition (Englisch)
- Neue Suche nach: McCauley, Micah J.
- Neue Suche nach: Rouzina, Ioulia
- Neue Suche nach: Williams, Mark C.
- Neue Suche nach: McCauley, Micah J.
- Neue Suche nach: Rouzina, Ioulia
- Neue Suche nach: Williams, Mark C.
In:
Journal of Biomolecular Structure and Dynamics
;
31
, sup1
;
58
;
2013
- Aufsatz (Zeitschrift) / Elektronische Ressource
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Titel:91 Kinetics of DNA overstretching: melting vs. B-to-S transition
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Beteiligte:
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Erschienen in:Journal of Biomolecular Structure and Dynamics ; 31, sup1 ; 58
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Verlag:
- Neue Suche nach: Routledge
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Erscheinungsdatum:01.01.2013
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Format / Umfang:1 pages
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ISSN:
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DOI:
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Medientyp:Aufsatz (Zeitschrift)
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Format:Elektronische Ressource
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Sprache:Englisch
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Datenquelle:
Inhaltsverzeichnis – Band 31, Ausgabe sup1
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109 Molecular dynamics done quick: efficient trajectory analysis softwarePopov, Alexander V. / Vorobjev, Yuri N. / Zharkov, Dmitry O. et al. | 2013
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111 Towards the manifold representations of biological objectZhuravlev, Yu.N. / Guzev, M.A. / Skurichin, E.E. et al. | 2013
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128 Some derivatives of 1,3-diazaadamantane strongly stimulate strand exchange reaction between short oligonucleotidesGabrielian, Anna / Bocharova, Tatiana N. / Smirnova Alexander, Elena A. / Volodin, A. / Harutjunyan, Amalya / Gevorkyan, Knarik / Harutjunyan, Gayane et al. | 2013
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130 Transcription blockage by single-strand breaks in various sequences and the general model for transcription blockage by R-loop formationBelotserkovskii, Boris P. / Neil, Alexander J. / Saleh, Syed Shayon / Shin, Jane Hae Soo / Mirkin, Sergei M. / Hanawalt, Philip C. et al. | 2013
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129 The molecular mechanism of breakage at fragile site FRA16DKaushal, Simran / Lee, Soo-Mi Alison / House, Nealia / Gnanapradeepan, Keerthana / Snider, Adam / Su, Xiaofeng Allen / Freudenreich, Catherine H. et al. | 2013
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131 Using whole-genome sequencing to search for trans-modifiers of repeat expansionsMcGinty, Ryan / Aksenova, Anna / Wang, Eric / Hausman, David / Mirkin, Sergei et al. | 2013
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132 Impact of sticky end length on the diffraction of self-assembled DNA crystalsOhayon, Yoel P. / Chandrasekaran, Arun Richard / Demirel, Esra / Obbad, Sabrine I. / Shah, Rutu C. / Adesoba, Victoria T. / Lehmann, Matthew / Birktoft, Jens J. / Sha, Ruojie / Chaikin, Paul M. et al. | 2013
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133 Designed DNA crystals with a triple-helix veneerChandrasekaran, Arun Richard / Rusling, David A. / Ohayon, Yoel P. / Sha, Ruojie / Seeman, Nadrian C. et al. | 2013
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134 Encapsulation of antitumor drugs tamoxifen, 4-hydroxytamoxifen and endoxifen by chitosan nanoparticlesTajmir-Riahi, H.A. / Agudelo, D. / Sanyakamdhorn, S. et al. | 2013
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135 Arranging enzymes and receptors with nanometer-scale precision on molecular switchboardsTien, Ngo Anh / Nakata, Eiji / Morii, Takashi et al. | 2013
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136 Dendritic Alkyl Chains on DNA Cages: A Geometry-Dependent Inter- or Intramolecular “Handshake”Edwardson, Thomas G.W. / Carneiro, Karina M.M. / McLaughlin, Christopher K. / Serpell, Christopher J. / Sleiman, Hanadi F. et al. | 2013
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137 DNA nanostructure serum stability: greater than the sum of their partsConway, Justin W. / McLaughlin, Christopher K. / Castor, Katherine J. / Sleiman, Hanadi et al. | 2013
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138 Optimizing DNA nanotube design for future applicationsHamblin, Graham D. / Sleiman, Hanadi F. et al. | 2013
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139 Development and application of crop exudate specific aptamersMastronardi, Emily / Mckeague, Maureen / Monreal, Carlos / DeRosa, Maria et al. | 2013
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140 Development of nanoscale aptamer films for controlled release of encapsulated payloadsFoster, Amanda G. / Sultan, Yasir / Monreal, Carlos / DeRosa, Maria C. et al. | 2013
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141 DNA origami as a platform for assembly of nanophotonic elementsLiu, Yan et al. | 2013
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142 Non-canonical base pairing motifs in DNA crystal designGeng, Chun / Muser, Stephanie E. / Paukstelis, Paul J. et al. | 2013
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143 Porous three-dimensional DNA crystals as biomolecular containers for catalysisGeng, Chun / Paukstelis, Paul J. et al. | 2013
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144 Sculpting light with DNA origamiKuzyk, Anton / Schreiber, Robert / Fan, Zhiyuan / Pardatscher, Günther / Roller, Eva-Maria / Högele, Alexander / Simmel, Friedrich C. / Govorov, Alexander O. / Liedl, Tim et al. | 2013
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145 Single-molecule observation of enzymes and DNA structural changes in the DNA nanostructuresSugiyama, Hiroshi / Endo, Masayuki et al. | 2013
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146 Amyloid fibril polymorphism probed by advanced vibrational spectroscopyLednev, Igor K. / Kurouski, Dmitry et al. | 2013
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147Characterizing the conformational space of two disordered peptides in different solutionsRojas, Ana V. / Easterhoff, David / DiMaio, John T.M. / Dewhurst, Stephen / Grossfield, Alan / Miao, Hongyu / Nilsson, Bradley L. et al. | 2013
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148 Evolutionary dynamics of conformational flexibilityOrtiz, Juan F. / Masterson, Patrick / Macdonald, Madolyn / Uversky, Vladimir N. / Siltberg-Liberles, Jessica et al. | 2013
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149 Generating context-specific functions with intrinsically disordered domainsLiu, Ying / Matthews, Kathleen S. / Bondos, Sarah E. et al. | 2013
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150 Getting a grip on alpha-synuclein amyloid oligomersSubramaniam, Vinod et al. | 2013
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153 Wonderful roles of the entropy in protein dynamics, binding and foldingXie, Yue-Hui / Tao, Yan / Liu, Shu-Qun et al. | 2013
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152 Order from disorder: defining structure in disordered proteinsElbaum-Garfinkle, Shana / Cobb, Garrett / Nath, Abhinav / Rhoades, Elizabeth et al. | 2013
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151 Network inference and analysis of Parkinson’s diseaseDel Sol Mesa, Antonio et al. | 2013
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154 Protein folding and binding funnels: a common driving force and a common mechanismXie, Yue-Hui / Sang, Peng / Tao, Yan / Liu, Shu-Qun et al. | 2013
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155 3D QSAR and protein–protein interaction studies on neuraminidase against Clostridium perfringens: An approach toward target identification using structure-based drug designingSomvanshi, Pallavi / Rai, Suruchi / Mishra, Bhartendu Nath et al. | 2013
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156 A cutting-edge to drug discovery in Cancer; Cyclins as novel, targets - an in silico techniqueSarita Rajender, P. / Bhargavi, K. / Ramasree, D. / Uma, V. et al. | 2013
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157 Identification of intein inhibitors as novel anti-microbials with relevance to tuberculosisPearson, Seth / Callahan, Brian / Belfort, Georges / Belfort, Marlene et al. | 2013
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158 A molecular dynamics simulation-based prediction of deleterious angiogenin mutations causing amyotrophic lateral sclerosisPadhi, Aditya K. / Jayaram, B. / Gomes, James et al. | 2013
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159 Computational approach for optimizing inhibitors of 1HWK (HMG-CoA reductase)Annabhimoju, Ramakrishna / Vuruputuri, Uma et al. | 2013
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160 A dynamic model for the linker histoneTodolli, Stefjord / Olson, Wilma K. et al. | 2013
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161 Discovery of potent KdsA inhibitors of Leptospira interrogans through homology modeling, docking, and molecular dynamics simulationsPradhan, Dibyabhaba / Priyadarshini, Vani / Munikumar, Manne / Swargam, Sandeep / Umamaheswari, Amineni et al. | 2013
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163 Enhanced sampling of peptides and proteins with a new biasing replica exchange methodOstermeir, Katja / Zacharias, Martin et al. | 2013
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164 Extracting dynamics information from multiple structuresJernigan, Robert L. / Liu, Jie / Sankar, Kannan / Jia, Kejue / Zimmermann, Michael T. et al. | 2013
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162 Dominant forces in protein foldingBen-Naim, Arieh et al. | 2013
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165 Protein domains: a thermodynamic definitionPorter, Lauren L. / Rose, George D. et al. | 2013
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167 Network properties of decoy and CASP predicted models: a comparison with native protein structuresChatterjee, S. / Ghosh, S. / Vishveshwara, S. et al. | 2013
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166 Millisecond-long molecular dynamics simulations of proteins on a special-purpose machineShaw, David E. et al. | 2013
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169 Polymorphic assembly of computationally designed hydrophobic-rich collagen peptidesMcGuinness, Kenneth N. / Nanda, Vikas et al. | 2013
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168 NMR study of RQC domain of BLM proteinCheong, Vee Vee / Heddi, Brahim / Phan, Anh Tuân et al. | 2013
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170 GMPC model and the helix–coil transition in biopolymersMorozov, V.F. / Tonoyan, Sh.A. / Melkonyan, L.V. / Poghosyan, N.L. / Sargsyan, Sh.A. et al. | 2013
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171 Protein structure prediction with limited dataPerez, Alberto / MacCallum, Justin / Dill, Ken et al. | 2013
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172 Role of conserved water molecular triad in the recognition of IMP, NAD+ with Asp 274, Asn 303, Arg 322, and Asp 364 in both the isoform of hIMPDHMishra, Deepak K. / Bairagya, Hridoy R. / Mukhopadhyay, Bishnu P. et al. | 2013
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174 Self-association prompts proteins for new function: The role of altered dynamic propertiesWodak, Shoshana J. / Garton, Michael / Malevanets, Anatoly / McKinnon, Stephen et al. | 2013
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173 Role of free cysteines in leptin receptorKarthick, R. / Raghunath, Gokul / Anishetty, Sharmila / Malathi, R. et al. | 2013
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175 Structure-based engineering to generate high-affinity immunotherapy for the drug of abuseThakkar, Shraddha / Nanaware-Kharade, Nisha / Gonzalez, GuillermoIII / Celikel, Reha / Peterson, Eric / Varughese, Kottayil I. et al. | 2013
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176 Structure-based virtual screening towards identification of potential FabH inhibitorsPriyadarshini, Vani / Pradhan, Dibyabhaba / Munikumar, Manne / Swargam, Sandeep / Umamaheswari, Amineni et al. | 2013
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177 T-cell vaccine design for Streptococcus pneumoniae: an in silico approachMunikumar, Manne / Priyadarshini, Vani / Pradhan, Dibyabhaba / Swargam, Sandeep / Umamaheswari, Amineni et al. | 2013
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178 Targeting “Beta lactamase-C” in development of novel anti-tuberculosis therapeuticsHazra, Saugata / Blanchard, John S. et al. | 2013
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179 Impact of cancer mutations on protein binding and activityPanchenko, Anna et al. | 2013
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180 Integrating structural and systems biology: structure-based prediction of protein–protein interactions on a genome-wide scaleZhang, Qiangfeng Cliff / Petrey, Donald / Honig, Barry et al. | 2013
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181 Integrative analysis of gene expression and protein–protein interaction networks in GlioblastomaMishra, Seema et al. | 2013
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182 Investigating the mode of action of an essential OBG GTPase, CgtA in bacteriaChatterjee, Ananya / Datta, Partha P. et al. | 2013
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183 Isolation and partial characterization of a general hormone transporting blood protein complexGaripova, Margarita I. / Usmanova, Rita R. et al. | 2013
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184 Small molecule identification against novel MDRA protein of Mycobacterium tuberculosisKiran Kumar, M. / Vasavi, M. / Venkataramana Reddy, C. / Uma, V. et al. | 2013
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185 Vascular endothelial growth factor receptor-2 (VEGFR2): structure and functional relationshipNathan, Jhansi Rani / Shika, Shilpi / Ragunathan, Malathi et al. | 2013
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186 Molecular dynamics and ligand based studies for the validation of potential inhibitors for SrtA against Bacillus anthracisSingh, Sanjeev Kumar / Selvaraj, Chandrabose et al. | 2013
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187 Plucking the high hanging fruit: a systematic approach for targeting protein interfacesArora, Paramjit S. et al. | 2013
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189 Structural articulation of biochemical reactions using altered bonds and iterative topology switchingManjari, Swati R. / Banavali, Nilesh K. et al. | 2013
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188 Using CG modeling in exploring the role of dynamical effects in catalysis and in simulating biological molecular machinesWarshel, Arieh et al. | 2013
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190 The peculiarities of regulation of Yarrowia lipolytica yeast and citric acid overproductionMorgunov, Igor G. / Kamzolova, Svetlana V. et al. | 2013
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191 Point mutations in the yeast Pma1 H+-ATPase affect polyphosphate (PolyP) distributionTomashevski, Alexandr A. / Petrov, Valery V. et al. | 2013
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192 Computer-aided search for novel anti-HIV-1 agents presenting peptidomimetics of broadly neutralizing antibodies against the virus envelope GP120 V3 loopAndrianov, Alexander M. / Kashyn, Ivan A. / Tuzikov, Alexander V. et al. | 2013
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194 Energetics and dynamics of adenine protonation in HIV-1’s dimerization initiation siteRobbins, Timothy J. / Whitakera, Nicole A. / Wang, Yongmei et al. | 2013
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193 Computer-aided design of novel HIV-1 entry inhibitors based on glycosphingolipidsAndrianov, Alexander M. / Kornoushenko, Yuri V. / Kashyn, Ivan A. / Tuzikov, Alexander V. et al. | 2013
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195 In silico study on HIV-PRIs substructures to terminate proteolytic activity in HTLVSingh, Poonam / Singh, Sanjeev Kumar / Selvaraj, Chandrabose / Singh, Rama Kant et al. | 2013
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196 Mechanisms of viral dsRNA detection and antiviral signal activation by MDA5 filamentWu, Bin / Peisley, Alys / Hur, Sun et al. | 2013
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197 Modeling the maturation pathway of the HIV-1 5’-UTR RNA dimerUlyanov, Nikolai B. / Guilbert, Christophe / Tjhen, Richard / James, Thomas L. et al. | 2013
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198 MS-based approaches for the structural determination of retroviral ribonucleoproteinsFabris, Dan / Scalabrin, Matteo / Asare-Okai, Papa Nii / Basanta-Sanchez, Maria / Lippens, Jennifer et al. | 2013
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199 Network analysis of inhibition and resistance mechanisms in viral polymerasesSrivastava, Ashutosh / Sinha, Somdatta et al. | 2013
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201 The ESCRT pathway in HIV budding and cell divisionSundquist, Wesley I. et al. | 2013
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200 Potent inhibition of HIV replication by RNA-binding peptide mimetics with unprecedented specificityVarani, Gabriele et al. | 2013
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203 Polymers through pores: single-molecule experiments with nucleic acids, polypeptides and polysaccharidesBayley, Hagan et al. | 2013
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202 Structural aspects of the infection cycles of giant virusesMinsky, Abraham / Mutsafi, Yael et al. | 2013
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204 Polymer translocationMuthukumar, Murugappan et al. | 2013
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205 Ultrathin nanopores for structural analysis of small nucleic acidsWanunu, Meni et al. | 2013
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206 An artificial active DNA transporter from biological building blocksFranceschini, Lorenzo / Soskine, Misha / Maglia, Giovanni et al. | 2013
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207 Nanopore immobilization of DNA polymerase enhances single-molecule sequencingLarkin, Joseph / Foquet, Matieu / Korlach, Jonas / Wanunu, Meni et al. | 2013
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208 Electrophoresis and capture of DNA into a nanoporeGrosberg, Alexander Y. et al. | 2013
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210 Computational study of substrates and mediators features of lacassesDelavari, Azar / Perez, Juan J. et al. | 2013
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209 Designing stiff protein nanopores for challenging tasks in biosensingMovileanu, L. et al. | 2013
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211 Synthesis of informational polymers by guided polymerization reactions in liquid crystalline matrices of lipidsMungi, Chaitanya / Rajamani, Sudha et al. | 2013
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212 Shifting interfaces: changes in protein–protein and protein–DNA interfaces probed via molecular dynamicsNegureanu, Lacra / Salsbury, FreddieJr. et al. | 2013
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213 Structures and interactions of proteins involved in ER-associated protein degradationHeinemann, Udo / Arumughan, Anup / Hanna, Jennifer / Roske, Yvette / Schütz, Anja / Wanker, Erich E. et al. | 2013