Transmembrane helix predictions revisited (Englisch)
- Neue Suche nach: Chen, Chien Peter
- Neue Suche nach: Kernytsky, Andrew
- Neue Suche nach: Rost, Burkhard
- Neue Suche nach: Chen, Chien Peter
- Neue Suche nach: Kernytsky, Andrew
- Neue Suche nach: Rost, Burkhard
In:
Protein Science
;
11
, 12
;
2774-2791
;
2002
- Aufsatz (Zeitschrift) / Elektronische Ressource
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Titel:Transmembrane helix predictions revisited
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Beteiligte:
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Erschienen in:Protein Science ; 11, 12 ; 2774-2791
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Verlag:
- Neue Suche nach: Cold Spring Harbor Laboratory Press
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Erscheinungsdatum:01.12.2002
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Format / Umfang:18 pages
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ISSN:
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DOI:
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Medientyp:Aufsatz (Zeitschrift)
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Format:Elektronische Ressource
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Sprache:Englisch
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Schlagwörter:MaxHom, dynamic programming algorithm for conservation weight‐based multiple sequence alignment (Sander and Schneider 1991) , Wolfenden, hydration potential (Wolfenden et al. 1981) , PHDpsihtm, divergent profile (PSI‐BLAST)‐based neural network prediction 2002) , TMAP, alignment‐based prediction of transmembrane helices (Persson and Argos 1996) , TopPred2, hydrophobicity‐based membrane helix prediction (von Heijne 1992; Cserzö et al. 1997) , SPLIT, transmembrane helix prediction (Juretic et al. 1998) , , WW, Wimley–White hydrophobicity scale‐based method (Wimley et al. 1996a,b; White and Wimley 1999; White 2001). , PHDhtm, profile‐based neural network prediction of transmembrane helices (Rost 1996; Rost et al. 1996b) , TM, transmembrane , GES, hydrophobicity property (Engelman et al. 1986; Prabhakaran 1990) , multiple alignments, predicting transmembrane helices , DSSP, program assigning secondary structure (Kabsch and Sander 1983) , KD, Kyte–Doolittle hydropathy index (Kyte and Doolittle 1982) , META‐PP, internet service allowing access to a variety of bioinformatics tools through one single interface (Eyrich and Rost 2000) , TrEMBL, translation of the EMBL‐nucleotide database coding DNA to protein sequences (Bairoch and Apweiler 2000) , Fauchere, hydrophobic parameter π from the partitioning of N‐acetyl‐amino‐acid amides (Fauchere and Pliska 1983) , PSI‐BLAST, position‐specific iterated database search (Altschul et al. 1997) , comparing genomes , computational biology , EVA, server automatically evaluating structure prediction methods (Eyrich et al. 2001a,b) , TMpred, prediction of transmembrane helices (Hofmann and Stoffel 1993) , Eisenberg, normalized consensus hydrophobicity scale (Eisenberg et al. 1984) , Hopp‐Woods, Hopp‐Woods hydrophilicity value (Hopp and Woods 1981) , BIG, nonidentical merger of SWISS‐PROT (Bairoch and Apweiler 2000) and TrEMBL (Bairoch and Apweiler 2000) and PDB (Berman et al. 2000) , Av‐Cid, normalized average hydrophobicity scale (Cid 1992) , SWISS‐PROT, database of protein sequences (Bairoch and Apweiler 2000) , SignalP, signal peptide prediction (Nielsen et al. 1997a) , Ben‐Tal, hydrophobicity scale representing the free energy of transferring an amino acid from water into the center of the hydrocarbon region of a lipid bilayer (Kessel and Ben‐Tal 2002) , Bull‐Breese, Bull‐Breese hydrophobicity scale (Bull 1974) , , SOSUI, hydrophobicity‐ and amphiphilicity‐based transmembrane helix prediction (Hirokawa et al. 1998) , Roseman, solvation‐corrected side‐chain hydropathy (Roseman 1988) , MEMSAT, dynamic‐programming based prediction of transmembrane helices (Jones et al. 1994) , proteomes , EM, Solvation free energy (Eisenberg and McLachlan 1986) , Heijne, transfer free energy to lipophilic phase (von Heijne and Blomberg 1979) , Sweet, optimal matching hydrophobicity (Sweet and Eisenberg 1983) , bioinformatics , protein structure prediction , Lawson, transfer free energy (Lawson et al. 1984) , PDB, Protein Data Bank of experimentally determined 3D structures of proteins (Bernstein et al. 1977; Berman et al. 2000) , Sequence analysis , Radzicka, transfer free energy from 1‐octanol to water (Radzicka and Wolfenden 1988) , A‐Cid, normalized hydrophobicity scale for α‐proteins (Cid 1992) , Nakashima, normalized composition of membrane proteins (Nakashima et al. 1990) , BLAST, fast sequence alignment method (Altschul and Gish 1996) , TMH, transmembrane helix , Levitt, hydrophobic parameter (Levitt 1976),
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Datenquelle:
Inhaltsverzeichnis – Band 11, Ausgabe 12
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