Architecture of basic building blocks in protein and domain structural interaction networks (English)
- New search for: Moon, Hyun S.
- New search for: Moon, Hyun S.
- New search for: Bhak, Jonghwa
- New search for: Lee, Kwang H.
- New search for: Lee, Doheon
In:
Bioinformatics
;
21
, 8
; 1479-1478
;
2013
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ISSN:
- Article (Journal) / Print
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Title:Architecture of basic building blocks in protein and domain structural interaction networks
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Contributors:
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Published in:Bioinformatics ; 21, 8 ; 1479-1478
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Publisher:
- New search for: Oxford Univ. Press
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Place of publication:Oxford
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Publication date:2013
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ISSN:
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ZDBID:
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Type of media:Article (Journal)
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Type of material:Print
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Language:English
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Keywords:
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Classification:
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Source:
Table of contents – Volume 21, Issue 8
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1295
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Synergy of human Pol II core promoter elements revealed by statistical sequence analysisGershenzon, Naum I. et al. | 2005
- 1301
-
The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formationBateman, Alex et al. | 2005
- 1304
-
The WHy domain mediates the response to desiccation in plants and bacteriaCiccarelli, Francesca D. et al. | 2005
- 1308
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Structural drift: a possible path to protein fold changeKrishna, S.Sri et al. | 2005
- 1311
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Topology of small-world networks of protein-protein complex structuresdel Sol, Antonio et al. | 2005
- 1316
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Accelerated off-target search algorithm for siRNAYamada, Tomoyuki et al. | 2005
- 1325
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Autoregressive modeling of analytical sensor data can yield classifiers in the predictor coefficient parameter spaceKrebs, Melissa D. et al. | 2005
- 1332
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SpliceMachine: predicting splice sites from high-dimensional local context representationsDegroeve, Sven et al. | 2005
- 1339
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Statistical detection of chromosomal homology using shared-gene density aloneHampson, S.E. et al. | 2005
- 1349
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Correlation of amino acid preference and mammalian viral genome typeRose, John R. et al. | 2005
- 1358
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Evidence for the regulation of alternative splicing via complementary DNA sequence repeatsLian, Yun et al. | 2005
- 1365
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YODA: selecting signature oligonucleotidesNordberg, Eric K. et al. | 2005
- 1371
-
A graph based algorithm for generating EST consensus sequencesMalde, Ketil et al. | 2005
- 1376
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Highly specific and accurate selection of siRNAs for high-throughput functional assaysSantoyo, Javier et al. | 2005
- 1383
-
Support vector machines for separation of mixed plant-pathogen EST collections based on codon usageFriedel, Caroline C. et al. | 2005
- 1389
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LongSAGE analysis revealed the presence of a large number of novel antisense genes in the mouse genomeWahl, Matthias B. et al. | 2005
- 1393
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LongSAGE analysis significantly improves genome annotation: identifications of novel genes and alternative transcripts in the mouseWahl, Matthias B. et al. | 2005
- 1401
-
TargetFinder: a software for antisense oligonucleotide target site selection based on MAST and secondary structures of target mRNABo, Xiaochen et al. | 2005
- 1403
-
A fuzzy guided genetic algorithm for operon predictionJacob, E. et al. | 2005
- 1408
-
Evaluation of iterative alignment algorithms for multiple alignmentWallace, Iain M. et al. | 2005
- 1415
-
Cysteine separations profiles on protein sequences infer disulfide connectivityZhao, East et al. | 2005
- 1421
-
Statistical evaluation and comparison of a pairwise alignment algorithm that a priori assigns the number of gaps rather than employing gap penaltiesNozaki, Yasuyuki et al. | 2005
- 1429
-
Implicit motif distribution based hybrid computational kernel for sequence classificationAtalay, Volkan et al. | 2005
- 1437
-
DbW: automatic update of a functional family-specific multiple alignmentPrigent, V. et al. | 2005
- 1443
-
Mapping SNPs to protein sequence and structure dataCavallo, A. et al. | 2005
- 1451
-
A structure-based method for protein sequence alignmentKann, Maricel G. et al. | 2005
- 1457
-
A score matrix to reveal the hidden links in glycansAoki, Kiyoko F. et al. | 2005
- 1464
-
Convergent evolution of domain architectures (is rare)Gough, Julian et al. | 2005
- 1472
-
M-ZDOCK: a grid-based approach for Cn symmetric multimer dockingPierce, Brian et al. | 2005
- 1479
-
Architecture of basic building blocks in protein and domain structural interaction networksMoon, Hyun S. et al. | 2005
- 1487
-
Improved prediction of protein-protein binding sites using a support vector machines approachBradford, James R. et al. | 2005
- 1495
-
The ArrayExpress gene expression database: a software engineering and implementation perspectiveSarkans, Ugis et al. | 2005
- 1502
-
Sample size for gene expression microarray experimentsTsai, Chen-An et al. | 2005
- 1509
-
Optimal number of features as a function of sample size for various classification rulesHua, Jianping et al. | 2005
- 1516
-
Bayesian models for the analysis of genetic structure when populations are correlatedFu, Rongwei et al. | 2005
- 1530
-
HykGene: a hybrid approach for selecting marker genes for phenotype classification using microarray gene expression dataWang, Yuhang et al. | 2005
- 1538
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Characterizing the dynamic connectivity between genes by variable parameter regression and Kalman filtering based on temporal gene expression dataCui, Qinghua et al. | 2005
- 1542
-
Boolean relationships among genes responsive to ionizing radiation in the NCI 60 ACDSPal, Ranadip et al. | 2005
- 1550
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Balancing protein similarity and gene co-expression reveals new links between genetic conservation and developmental diversity in invertebratesLefebvre, Céline et al. | 2005
- 1559
-
LS Bound based gene selection for DNA microarray dataZhou, Xin et al. | 2005
- 1565
-
Differential gene expression detection using penalized linear regression models: the improved SAM statisticsWu, Baolin et al. | 2005
- 1572
-
Quick and simple: quality control of microarray dataSauer, Ursula et al. | 2005
- 1579
-
A nearest-neighboring-end algorithm for genetic mappingCrane, Charles F. et al. | 2005
- 1592
-
Generalized Venn diagrams: a new method of visualizing complex genetic set relationsKestler, Hans A. et al. | 2005
- 1596
-
VitaPad: visualization tools for the analysis of pathway dataHolford, Matthew et al. | 2005
- 1603
-
Exploring the diversity of complex metabolic networksHatzimanikatis, Vassily et al. | 2005
- 1610
-
Dynamic simulation of protein complex formation on a genomic scaleBeyer, A. et al. | 2005
- 1617
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Investigating the dynamic behavior of biochemical networks using model familiesHaunschild, Marc Daniel et al. | 2005
- 1626
-
Dynamic network reconstruction from gene expression data applied to immune response during bacterial infectionGuthke, Reinhard et al. | 2005
- 1635
-
GMDCSB.DB the Golm Metabolome DatabaseKopka, Joachim et al. | 2005
- 1639
-
Quantifying the relevance of different mediators in the human immune cell networkTieri, P. et al. | 2005
- 1644
-
Predicting gene function through systematic analysis and quality assessment of high-throughput dataKemmeren, Patrick et al. | 2005
- 1653
-
Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extractionSantos, Carlos et al. | 2005
- 1659
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Visualizing information across multidimensional post-genomic structured and textual databasesTao, Ying et al. | 2005
- 1668
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Evaluation of HIV-1 kinetic models using quantitative discrimination analysisKnorr, Andrea L. et al. | 2005
- 1678
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A framework for scientific data modeling and automated software developmentFogh, Rasmus H. et al. | 2005
- 1685
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Constructing ontology-driven protein family databasesWolstencroft, K. et al. | 2005
- 1693
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Procom: a web-based tool to compare multiple eukaryotic proteomesLi, Jin Billy et al. | 2005
- 1695
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TERMINUS-Telomeric End-Read Mining IN Unassembled SequencesLi, Weixi et al. | 2005
- 1699
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HESAS: HERVs Expression and Structure Analysis SystemKim, Tae-Hyung et al. | 2005
- 1701
-
MultiPLX: automatic grouping and evaluation of PCR primersKaplinski, Lauris et al. | 2005
- 1703
-
Carhta Gene: multipopulation integrated genetic and radiation hybrid mappingde Givry, Simon et al. | 2005
- 1705
-
DSEARCH: sensitive database searching using distributed computingKeane, T.M. et al. | 2005
- 1707
-
PatGen-a consolidated resource for searching genetic patent sequencesRouse, Richard J.D. et al. | 2005
- 1709
-
SymmeTREE: whole-tree analysis of differential diversification ratesChan, Kai M.A. et al. | 2005
- 1711
-
RBT-a tool for building refined Buneman treesBesenbacher, Søren et al. | 2005
- 1713
-
GeneContent: software for whole-genome phylogenetic analysisGu, Xun et al. | 2005
- 1715
-
Voro3D: 3D Voronoi tessellations applied to protein structuresDupuis, Franck et al. | 2005
- 1717
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The carbohydrate sequence markup language (CabosML): an XML description of carbohydrate structuresKikuchi, Norihiro et al. | 2005
- 1719
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Porter: a new, accurate server for protein secondary structure predictionPollastri, Gianluca et al. | 2005
- 1721
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PreDs: a server for predicting dsDNA-binding site on protein molecular surfacesTsuchiya, Yuko et al. | 2005
- 1724
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OLIN: optimized normalization, visualization and quality testing of two-channel microarray dataFutschik, Matthias E. et al. | 2005
- 1727
-
Bloader-a batch loader application for MIAMExpressSchwager, Christian et al. | 2005
- 1730
-
HaploPainter: a tool for drawing pedigrees with complex haplotypesThiele, Holger et al. | 2005
- 1733
-
Serial SimCoal: A population genetics model for data from multiple populations and points in timeAnderson, Christian N.K. et al. | 2005
- 1735
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CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPsAo, S.I. et al. | 2005
- 1737
-
In silico fine-mapping: narrowing disease-associated loci by intergenomicsSerrano-Fernández, Pablo et al. | 2005
- 1739
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expa: a program for calculating extreme pathways in biochemical reaction networksBell, Steven L. et al. | 2005
- 1741
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An enhanced Java graph applet interface for visualizing interactomesChang, Aaron N. et al. | 2005
- 1743
-
GPSDB: a new database for synonyms expansion of gene and protein namesPillet, Violaine et al. | 2005
- 1745
-
BIAS: Bioinformatics Integrated Application SoftwareFinak, G. et al. | 2005
- 1747
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Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogasterBergman, Casey M. et al. | 2005
- 1750
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Erratum| 2005