ACTA CRYSTALLOGRAPHICA SECTION D
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Table of contents
- 1755
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Research papers - Maximum-likelihood density modification using pattern recognition of structural motifs - A likelihood-based density-modification method is extended to include pattern recognition of structural motifs.Terwilliger, T.C. et al. | 2001
- 1755
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Maximum-likelihood density modification using pattern recognition of structural motifsTerwilliger, Thomas C. et al. | 2001
- 1763
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Map-likelihood phasingTerwilliger, Thomas C. et al. | 2001
- 1763
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Research papers - Map-likelihood phasing - A map-likelihood function is described that can yield phase probabilities with very low model bias.Terwilliger, T.C. et al. | 2001
- 1776
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Multiple isomorphous replacement on merohedral twins: structure determination of deacetoxycephalosporin C synthaseTerwisscha van Scheltinga, Anke C. / Valegård, Karin / Ramaswamy, S. et al. | 2001
- 1776
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Research papers - Multiple isomorphous replacement on merohedral twins: Structure determination of deacetoxycephalosporin C synthase - The structure of DAOCS was determined by isomorphous replacement from crystals twinned by merohedry.Scheltinga, A.C.Terwisscha van et al. | 2001
- 1786
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Research papers - The first structure of pectate lyase belonging to polysaccharide lyase family 3 - The structure of a low molecular-weight pectate lyase was determined at 1.5 °A resolution. The structure is a b-helix domain motif.Akita, M. et al. | 2001
- 1786
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The first structure of pectate lyase belonging to polysaccharide lyase family 3Akita, Masatake / Suzuki, Atsuo / Kobayashi, Tohru et al. | 2001
- 1793
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Research papers - Regulation of catalytic function by molecular association: Structure of phospholipase A2 from Daboia russelli pulchella (DPLA2) at 1.9 °A resolution - The high-resolution X-ray analysis of phospholipase A2 from D. russelli pulchella clearly brings out the differences between the two crystallographically independent molecules in the structure. The structure presents a unique case in which molecular association leads to blocking of the active site in one molecule while retaining the open geometry of the site in the other.Chandra, V. et al. | 2001
- 1793
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Regulation of catalytic function by molecular association: structure of phospholipase A2from Daboia russelli pulchella (DPLA2) at 1.9 Å resolutionChandra, Vikas / Kaur, Punit / Jasti, Jayasankar et al. | 2001
- 1799
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Spherical plant viruses: interactions in solution, phase diagrams and crystallization of brome mosaic virusCasselyn, Marina / Perez, Javier / Tardieu, Annette et al. | 2001
- 1799
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Research papers - Spherical plant viruses: Interactions in solution, phase diagrams and crystallization of brome mosaic virus - Variations of interactions of brome mosaic viruses in solution and the immediate formation of microcrystals were characterized by small-angle X-ray scattering.Casselyn, M. et al. | 2001
- 1813
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Crystallographic analysis of family 11 endo-β-1,4-xylanase Xyl1 from Streptomyces sp. S38Wouters, J. / Georis, J. / Engher, D. et al. | 2001
- 1813
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Research papers - Crystallographic analysis of family 11 endo-b-1,4-xylanase Xyl1 from Streptomyces sp. S38 - Family 11 endo-b-1,4-xylanases degrade xylan, the main constituent of plant hemicelluloses. The structure of a family 11 endo-xylanase from Streptomyces sp. S38 at 2.0 °A is reported.Wouters, J. et al. | 2001
- 1820
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Conditional optimization: a new formalism for protein structure refinementScheres, Sjors H. W. / Gros, Piet et al. | 2001
- 1820
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Research papers - Conditional optimization: A new formalism for protein structure refinement - An N-particle approach, combining loose-atom refinement with extensive application of geometrical restraints, allows optimization of a simple polyalanine test structure starting from random atom distributions.Scheres, S.H.W. et al. | 2001
- 1829
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A twinned monoclinic crystal form of human peroxiredoxin 5 with eight molecules in the asymmetric unitDeclercq, Jean Paul / Evrard, Christine et al. | 2001
- 1829
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Research papers - A twinned monoclinic crystal form of human peroxiredoxin 5 with eight molecules in the asymmetric unit - The monoclinic crystal form of human peroxiredoxin 5 has been determined by the SIR method after detwinning. The presence of eight molecules in the asymmetric unit allows an analysis of the mobility.Declercq, J.-P. et al. | 2001
- 1836
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Binding of N-acetylglucosamine to chicken egg lysozyme: a powder diffraction studyVon Dreele, R. B. et al. | 2001
- 1836
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Research papers - Binding of N-acetylglucosamine to chicken egg lysozyme: A powder diffraction study - The binding of N-acetylglucosamine to chicken egg lysozyme was investigated by high-resolution X-ray powder diffraction.Dreele, R.B.Von et al. | 2001
- 1843
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Research papers - Structure of Ca2+-loaded human grancalcin - The structure of full-length grancalcin, a cytosolic Ca2+ -binding protein, has been determined in the apo form and with one EF-hand motif within the dimer occupied by a Ca2+ ion.Jia, J. et al. | 2001
- 1843
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Structure of Ca2+-loaded human grancalcinJia, Jia / Borregaard, Niels / Lollike, Karsten et al. | 2001
- 1850
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Research papers - The structure of greylag goose oxy haemoglobin: The roles of four mutations compared with bar-headed goose haemoglobin - The structure of the greylag goose oxy haemoglobin shows quaternary structural differences compared with that of its highland relative bar-headed goose. The four differing residues between the two species may be responsible for the differences in their oxygen affinity and quaternary structure.Liang, Y.-H. et al. | 2001
- 1850
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The structure of greylag goose oxy haemoglobin: the roles of four mutations compared with bar-headed goose haemoglobinLiang, Yu He / Liu, Xiao Zhou / Liu, Shun He et al. | 2001
- 1857
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Research papers - Matrix methods for solving protein substructures of chlorine and sulfur from anomalous data - Using Karle-Hauptman matrices as the basis of an algebraic procedure of phase determination is proposed. The method allows the determination of the sulfur-chlorine substructure of lysozyme based on the anomalous signal obtained from in-house measurements.Graaff, R.A.G.de et al. | 2001
- 1857
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Matrix methods for solving protein substructures of chlorine and sulfur from anomalous datade Graaff, Rudolf A. G. / Hilge, Mark / van der Plas, Jaco L. et al. | 2001
- 1863
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The X-ray structure of a recombinant major urinary protein at 1.75 Å resolution. A comparative study of X-ray and NMR-derived structuresKuser, Paula R. / Franzoni, Lorella / Ferrari, Elena et al. | 2001
- 1863
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Research papers - The X-ray structure of a recombinant major urinary protein at 1.75 °A resolution. A comparative study of X-ray and NMR-derived structures - The structure of a recombinant major urinary protein has been determined at 1.75 °A resolution. The crystal structure is compared with the NMR-derived structure.Kuser, P.R. et al. | 2001
- 1870
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Crystallization and preliminary X-ray diffraction analysis of shikimate kinase from Mycobacterium tuberculosis in complex with MgADPGu, Yijun / Reshetnikova, Ludmila / Li, Yue et al. | 2001
- 1870
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Crystallization papers - Crystallization and preliminary X-ray diffraction analysis of shikimate kinase from Mycobacterium tuberculosis in complex with MgADP - Shikimate kinase from M. tuberculosis has been overexpressed and purified to homogeneity. Crystals of the enzyme in complex with MgADP diffract to 2.2 °A resolution.Gu, Y. et al. | 2001
- 1872
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Crystallization and preliminary X-ray diffraction analysis of two homologous antigen-binding fragments in complex with different carbohydrate antigensNguyen, Hoa P. / Seto, Nina O. L. / Brade, Lore et al. | 2001
- 1872
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Crystallization papers - Crystallization and preliminary X-ray diffraction analysis of two homologous antigen-binding fragments in complex with different carbohydrate antigens - The crystallization of antigen-binding fragments from two homologous monoclonal antibodies in the presence and absence of different carbohydrate haptens offers an opportunity to determine the sequence-structural basis of carbohydrate specificity.Nguyen, H.P. et al. | 2001
- 1877
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Crystallization papers - Expression and preliminary X-ray diffraction studies of cytosolic Cu,Zn superoxide dismutase from Schistosoma mansoni - Cytosolic Cu,Zn superoxide dismutase from S. mansoni has been crystallized in both orthorhombic and monoclinic space groups and data have been collected to 2.2 and 1.55 °A, respectively. Molecular-replacement solutions show that slight distortions to the crystal lattice relate one form to the other.Cardoso, R.M.F. et al. | 2001
- 1877
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Expression and preliminary X-ray diffraction studies of cytosolic Cu,Zn superoxide dismutase from Schistosoma mansoniCardoso, Rosa M. F. / da Silva, Carlos H. T. P. / de Araújo, Ana P. U. et al. | 2001
- 1881
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Crystallization papers - Crystallization and preliminary X-ray study of the edema factor exotoxin adenylyl cyclase domain from Bacillus anthracis in the presence of its activator, calmodulin - A complex of human calmodulin and adenylyl cyclase domain of edema factor, a pathogenic factor secreted by Bacillus anthrax, was crystallized in space groups I222, P3121 and P212 1)21. The initial phases were obtained by selenomethionyl MAD using direct methods and improved by combining with two heavy-metal derivatives.Drum, C.L. et al. | 2001
- 1881
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Crystallization and preliminary X-ray study of the edema factor exotoxin adenylyl cyclase domain from Bacillus anthracis in the presence of its activator, calmodulinDrum, Chester L. / Shen, Yuequan / Rice, Phoebe A. et al. | 2001
- 1885
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Crystallization papers - Crystallization and preliminary X-ray analysis of W120K mutant of streptavidin - Crystallization and data collection are reported of a streptavidin crucial tryptophan mutation (Savm-W120K) that results in decreased affinity towards biotin and the dissociation of the tetramer into stable dimers.Pazy, Y. et al. | 2001
- 1885
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Crystallization and preliminary X-ray analysis of W120K mutant of streptavidinPazy, Yael / Laitinen, Olli H. / Ravoy, Bilha et al. | 2001
- 1887
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Crystallization and preliminary X-ray analysis of glucose dehydrogenase from Haloferax mediterraneiFerrer, Juan / Fisher, Martin / Burke, Jacky et al. | 2001
- 1887
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Crystallization papers - Crystallization and preliminary X-ray analysis of glucose dehydrogenase from Haloferax mediterranei - Recombinant glucose dehydrogenase from the halophilic archaea H. mediterranei has been refolded, purified and crystallized. Two crystal forms have been obtained, one of which diffracts to greater than 2.0 °A resolution.Ferrer, J. et al. | 2001
- 1890
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Crystallization and preliminary X-ray diffraction analysis of human transcobalamin, a vitamin B12-transporting proteinGarau, Gianpiero / Fedosov, Sergey N. / Petersen, Torben E. et al. | 2001
- 1890
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Crystallization papers - Crystallization and preliminary X-ray diffraction analysis of human transcobalamin, a vitamin B12-transporting protein - Transcobalamin is a cobalamin-binding protein present in mammalian plasma that facilitates the cellular uptake of vitamin B 12)-Crystals of human transcobalamin have been obtained and diffraction data have been collected to 3.2 °A resolution.Garau, G. et al. | 2001
- 1893
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Preliminary crystallographic studies of the double-stranded DNA-binding protein Sso10b from Sulfolobus solfataricusWardleworth, Ben N. / Russell, Rupert J. M. / White, Malcolm F. et al. | 2001
- 1893
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Crystallization papers - Preliminary crystallographic studies of the double-stranded DNA-binding protein Sso10b from Sulfolobus solfataricus - Crystals of Sso10b, an abundant non-specific double-stranded DNA-binding protein, from the hyperthermophilic archaeon S. solfataricus have been grown and preliminary X-ray data are reported.Wardleworth, B.N. et al. | 2001
- 1895
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Crystallization papers - Crystallization and preliminary crystallographic data of the PAS domain of the NifL protein from Azotobacter vinelandii - The PAS domain of the NifL protein from A. vinelandii has been crystallized and X-ray diffraction data have been collected to 3.0 °A using synchrotron radiation. The native crystals belong to space group R32, with unit-cell parameters aHefti, M. et al. | 2001
- 1895
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Crystallization and preliminary crystallographic data of the PAS domain of the NifL protein from Azotobacter vinelandiiHefti, Marco / Hendle, Jörg / Enroth, Cristofer et al. | 2001
- 1897
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Crystallization papers - Crystallization and preliminary X-ray analysis of neural haemoglobin from the nemertean worm Cerebratulus lacteus - A haemoglobin-related protein composed of 109 residues (i.e. 30% shorter than conventional vertebrate haemoglobins) has been isolated from a nemertean worm neural tissue. Crystals of the recombinant protein allow location of the haem Fe atom in anomalous difference Patterson maps.Pesce, A. et al. | 2001
- 1897
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Crystallization and preliminary X-ray analysis of neural haemoglobin from the nemertean worm Cerebratulus lacteusPesce, Alessandra / Nardini, Marco / Dewilde, Sylvia et al. | 2001
- 1900
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Crystallization papers - Crystallization and preliminary X-ray analysis of the periplasmic nitrate reductase (NapA-NapB complex) from Rhodobacter sphaeroides f. sp. denitrificans - The heterodynamic periplasmic nitrate reductase from R. sphaeroides has been cloned, purified and crystallized. X-ray diffraction data have been collected to 3.1 °A resolution.Pignol, D. et al. | 2001
- 1900
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Crystallization and preliminary X-ray analysis of the periplasmic nitrate reductase (NapA–NapB complex) from Rhodobacter sphaeroides f. sp. denitrificansPignol, David / Adriano, Jean Marc / Fontecilla-Camps, Juan Carlos et al. | 2001
- 1903
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Crystallization papers - Crystallization and preliminary X-ray study of two liver basic fatty acid-binding proteins - Two different liver basic fatty acid-binding proteins have been crystallized in forms suitable for X-ray diffraction studies. The crystals diffract to 2.0 and 2.5 °A resolution.Pietro, S.M.Di et al. | 2001
- 1903
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Crystallization and preliminary X-ray study of two liver basic fatty acid-binding proteinsDi Pietro, Santiago M. / Perduca, Massimiliano / Santomé, José A. et al. | 2001
- 1906
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Crystallization papers - Purification, crystallization and preliminary X-ray analysis of an acetylxylan esterase from Bacillus pumilus - Crystals of the acetylxylan esterase from B. pumilus have been obtained by the hanging-drop method. The crystals diffract to 2.0 °A resolution and belong to space group R32.Benini, S. et al. | 2001
- 1906
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Purification, crystallization and preliminary X-ray analysis of an acetylxylan esterase from Bacillus pumilusBenini, Stefano / Degrassi, Giuliano / Krastanova, Ivet et al. | 2001
- 1908
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Purification, crystallization and preliminary X-ray diffraction of a complex between IL-10 and soluble IL-10R1Josephson, Kristopher / McPherson, David T. / Walter, Mark R. et al. | 2001
- 1908
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Crystallization papers - Purification, crystallization and preliminary X-ray diffraction of a complex between IL-10 and soluble IL-10R1 - Crystals of interleukin-10 in complex with the extracellular cytokine-binding domain of its high-affinity receptor have been obtained. A complete low-temperature native data set to 2.9 °A has been collected using synchrotron radiation.Josephson, K. et al. | 2001
- 1912
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Crystallization papers - Crystallization and preliminary X-ray study of OXA-1, a class D b-lactamase - The OXA-1 oxacillinase from E. coli has been crystallized from PEG at pH 7.5 in P1. Crystals diffract to 1.5 °A resolution and contain two monomers related by a pseudo twofold screw axis.Sun, T. et al. | 2001
- 1912
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Crystallization and preliminary X-ray study of OXA-1, a class D β-lactamaseSun, Tao / Nukaga, Michiyoshi / Mayama, Kayoko et al. | 2001
- 1915
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Crystallization and preliminary X-ray analysis of maltose O-acetyltransferaseLo Leggio, Leila / Dal Degan, Florence / Poulsen, Peter et al. | 2001
- 1915
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Crystallization papers - Crystallization and preliminary X-ray analysis of maltose O-acetyltransferase - Maltose O-acetyltransferase has been crystallized in four crystal forms, including a trimethyl lead acetate cocrystal suitable for structure determination.Leggio, L.Lo et al. | 2001
- 1919
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Crystallization papers - Preparation and X-ray crystallographic analysis of recombinant obelin crystals diffracting to beyond 1.1 °A - Crystallization conditions are described that allow recombinant obelin from O. longissima to form relatively large single light yellow crystals with excellent diffraction properties. A 1.1 °A data set has been collected and analysis is in progress.Vysotski, E.S. et al. | 2001
- 1919
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Preparation and X-ray crystallographic analysis of recombinant obelin crystals diffracting to beyond 1.1 ÅVysotski, Eugene S. / Liu, Zhi Jie / Rose, John et al. | 2001
- 1922
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Crystallization papers - Crystallization and preliminary X-ray analysis of Citrobacter amalonaticus methylaspartate ammonia lyase - The purification and crystallization of C. amalonaticus (2S,3S)-3-methylaspartic acid ammonia lyase is reported. Diffraction data have been collected to 2.1 and 1.5 °A, respectively, from two different crystal forms.Levy, C.W. et al. | 2001
- 1922
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Crystallization and preliminary X-ray analysis of Citrobacter amalonaticus methylaspartate ammonia lyaseLevy, C. W. / Buckley, P. A. / Baker, P. J. et al. | 2001
- 1925
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Crystallization papers - Crystallization and preliminary crystallographic analysis of the proline dehydrogenase domain of the multifunctional PutA flavoprotein from Escherichia coli - Crystals of a peptide corresponding to the first 669 residues of a 1320-residue multifunctional flavoprotein have been obtained and X-ray data have been collected to 2.15 °A resolution.Nadaraia, S. et al. | 2001
- 1925
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Crystallization and preliminary crystallographic analysis of the proline dehydrogenase domain of the multifunctional PutA flavoprotein from Escherichia coliNadaraia, Shorena / Lee, Yong Hwan / Becker, Donald F. et al. | 2001
- 1928
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Crystallization and preliminary X-ray diffraction analysis of the 10 kDa C-terminal subdomain of 70 kDa heat-shock cognate proteinChou, Chia Cheng / Wang, Chung / Sun, Yuh Ju et al. | 2001
- 1928
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Crystallization papers - Crystallization and preliminary X-ray diffraction analysis of the 10 kDa C-terminal subdomain of 70 kDa heat-shock cognate protein - The C-terminal subdomain of rat 70 kDa heat-shock cognate protein has been cloned and expressed in E. coli. Preliminary crystallographic investigations have been carried out.Chou, C.-C. et al. | 2001
- 1931
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Crystallization and preliminary crystallographic studies of antibacterial polypeptide LCI expressed in Escherichia coliZhu, Jia Peng / Chen, Bing Zhang / Gong, Wei Bin et al. | 2001
- 1931
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Crystallization papers - Crystallization and preliminary crystallographic studies of antibacterial polypeptide LCI expressed in Escherichia coli - LCI, type of novel antibacterial polypeptide secreted by a Bacillus subtilis strain, has been expressed in E. coli DH5a with recombinant plasmid pBVAB16 and crystallized using PEG 4000 as a precipitant.Zhu, J.-P. et al. | 2001
- 1933
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Crystallization papers - Cloning, expression, purification and preliminary X-ray crystallographic studies of Escherichia coli HSP100 ClpB N-terminal domain - The N-terminal domain of E. coli Hsp100 ClpB has been crystallized. The crystal diffracted X-rays to 1.95 °A.Li, J. et al. | 2001
- 1933
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Cloning, expression, purification and preliminary X-ray crystallographic studies of Escherichia coli Hsp100 ClpB N-terminal domainLi, Jingzhi / Sha, Bingdong et al. | 2001
- 1936
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Crystallization papers - Crystallization and preliminary crystallographic analysis of human alanine:Glyoxylate aminotransferase and its polymorphic variants - Crystallization and preliminary crystallographic analysis has been carried out on the most common polymorphic variants of the human intermediary metabolic enzyme alanine:Glyoxylate aminotransferase, a deficiency of which causes the autosomal recessive disease primary hyperoxaluria type 1.Zhang, X. et al. | 2001
- 1936
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Crystallization and preliminary crystallographic analysis of human alanine:glyoxylate aminotransferase and its polymorphic variantsZhang, Xiaoxuan / Roe, S. Mark / Pearl, Laurence H. et al. | 2001
- 1938
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Crystallization papers - Crystallization of the Bacillus thuringiensis toxin Cry1Ac and its complex with the receptor ligand N-acetyl-D-galactosamine - Aggregation of a membrane toxin was overcome by the use of the diamine buffer 1,3-diaminopropane. Glycerol inhibition of complex formation between protein and carbohydrate was shown to be insignificant in competitive binding assays conducted in the presence of glycerol prior to crystallization.Derbyshire, D.J. et al. | 2001
- 1938
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Crystallization of the Bacillus thuringiensis toxin Cry1Ac and its complex with the receptor ligand N-acetyl-D-galactosamineDerbyshire, Dean J. / Ellar, David J. / Li, Jade et al. | 2001
- 1945
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Short communications - Crystallization and rhenium MAD phasing of the acyl-homoserinelactone synthase Esal - The acyl-homoserinelactone synthase Esa I has been crystallized in the space group P43, with unit-cell parameters aWatson, W.T. et al. | 2001
- 1945
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Crystallization and rhenium MAD phasing of the acyl-homoserinelactone synthase EsaIWatson, William T. / Murphy IV, Frank V. / Gould, Ty A. et al. | 2001
- 1950
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Structure of Haemophilus influenzae HslV protein at 1.9 Å resolution, revealing a cation-binding site near the catalytic siteSousa, Marcelo C. / McKay, David B. et al. | 2001
- 1950
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Short communications - Structure of Haemophilus influenzae HsIV protein at 1.9 °A resolution, revealing a cation-binding site near the catalytic site - Anomalous scattering measurements reveal a K+ ion bound in proximity to the active site of the H. influenzae HsIV protease.Sousa, M.C. et al. | 2001
- 1955
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Subject index| 2001
- 1962
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Author index| 2001