SANS: high-throughput retrieval of protein sequences allowing 50% mismatches (English)
- New search for: Koskinen, J. P.
- New search for: Holm, L.
- New search for: Koskinen, J. P.
- New search for: Holm, L.
In:
BIOINFORMATICS -OXFORD-
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28
, 18
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i438-i443
;
2012
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ISSN:
- Article (Journal) / Print
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Title:SANS: high-throughput retrieval of protein sequences allowing 50% mismatches
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Contributors:Koskinen, J. P. ( author ) / Holm, L. ( author )
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Published in:BIOINFORMATICS -OXFORD- ; 28, 18 ; i438-i443
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Publisher:
- New search for: Oxford University Press
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Publication date:2012-01-01
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Size:i438-i443
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ISSN:
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Type of media:Article (Journal)
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Type of material:Print
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Language:English
- New search for: 570
- Further information on Dewey Decimal Classification
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Classification:
DDC: 570 -
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© Metadata Copyright the British Library Board and other contributors. All rights reserved.
Table of contents – Volume 28, Issue 18
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 2297
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Inferring epigenetic and transcriptional regulation during blood cell development with a mixture of sparse linear modelsdo Rego, Thais G. et al. | 2012
- 2304
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Predicting drug-target interactions from chemical and genomic kernels using Bayesian matrix factorizationGönen, Mehmet et al. | 2012
- 2311
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Integrating literature-constrained and data-driven inference of signalling networksEduati, Federica et al. | 2012
- 2318
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Efficient sampling for Bayesian inference of conjunctive Bayesian networksSakoparnig, Thomas et al. | 2012
- 2325
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Context-specific transcriptional regulatory network inference from global gene expression maps using double two-way t-testsQi, Jianlong et al. | 2012
- 2333
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Metabolite identification and molecular fingerprint prediction through machine learningHeinonen, Markus et al. | 2012
- 2342
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Network inference using steady-state data and Goldbeter-koshland kineticsOates, Chris J et al. | 2012
- 2349
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Targeted retrieval of gene expression measurements using regulatory modelsGeorgii, Elisabeth et al. | 2012
- 2357
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A regression model for estimating DNA copy number applied to capture sequencing dataRigaill, Guillem J. et al. | 2012
- 2366
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Fast and accurate read alignment for resequencingMu, John C. et al. | 2012
- 2374
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A bioimage informatics approach to automatically extract complex fungal networksObara, Boguslaw et al. | 2012
- 2382
-
CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysisLi, Pei et al. | 2012
- 2385
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SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impactsRyan, Michael C. et al. | 2012
- 2388
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ANGES: reconstructing ANcestral GEnomeS mapsJones, Bradley R. et al. | 2012
- 2391
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RIBFIND: a web server for identifying rigid bodies in protein structures and to aid flexible fitting into cryo EM mapsPandurangan, Arun Prasad et al. | 2012
- 2394
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Cell-Dock: high-performance protein-protein dockingPons, Carles et al. | 2012
- 2397
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GAPIT: genome association and prediction integrated toolLipka, Alexander E. et al. | 2012
- 2400
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CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry dataLinderman, Michael D. et al. | 2012
- 2402
-
CySBML: a Cytoscape plugin for SBMLKönig, Matthias et al. | 2012
- 2404
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DanteR: an extensible R-based tool for quantitative analysis of -omics dataTaverner, Tom et al. | 2012
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ECCB 2012: The 11th European Conference on Computational BiologySchwede, Torsten et al. | 2012
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ECCB 2012 Organization| 2012
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Telescoper: de novo assembly of highly repetitive regionsBresler, Ma'ayan et al. | 2012
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Long read alignment based on maximal exact match seedsLiu, Yongchao et al. | 2013
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Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious kd-treesMahmud, Md Pavel et al. | 2013
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DELLY: structural variant discovery by integrated paired-end and split-read analysisRausch, Tobias et al. | 2013
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Decoding properties of tRNA leave a detectable signal in codon usage biasRoth, Alexander C. et al. | 2012
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Accurate estimation of short read mapping quality for next-generation genome sequencingRuffalo, Matthew et al. | 2013
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MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sampleWang, Yi et al. | 2012
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Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomicsWu, Yu-Wei et al. | 2012
-
An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasisCoin, Lachlan J.M. et al. | 2013
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Nonlinear dimension reduction with Wright-Fisher kernel for genotype aggregation and association mappingZhu, Hongjie et al. | 2012
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Evolution of gene neighborhoods within reconciled phylogeniesBérard, Sèverine et al. | 2013
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Uncovering the co-evolutionary network among prokaryotic genesCohen, Ofir et al. | 2013
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Genomic context analysis reveals dense interaction network between vertebrate ultraconserved non-coding elementsDimitrieva, Slavica et al. | 2012
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Fractionation, rearrangement and subgenome dominanceSankoff, David et al. | 2012
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Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species treesStolzer, Maureen et al. | 2013
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Multiple instance learning of Calmodulin binding sitesMinhas, Fayyaz ul Amir Afsar et al. | 2013
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Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bondingGaudreault, Francis et al. | 2013
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A structure-based protocol for learning the family-specific mechanisms of membrane-binding domainsKällberg, Morten et al. | 2013
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SANS: high-throughput retrieval of protein sequences allowing 50% mismatchesKoskinen, J. Patrik et al. | 2012
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Protein domain recurrence and order can enhance prediction of protein functionsMessih, Mario Abdel et al. | 2013
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EnrichNet: network-based gene set enrichment analysisGlaab, Enrico et al. | 2012
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LocTree2 predicts localization for all domains of lifeGoldberg, Tatyana et al. | 2013
-
Techniques to cope with missing data in host-pathogen protein interaction predictionKshirsagar, Meghana et al. | 2012
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Identifying functional modules in interaction networks through overlapping Markov clusteringShih, Yu-Keng et al. | 2012
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Graphlet-based edge clustering reveals pathogen-interacting proteinsSolava, R. W. et al. | 2013
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Identification of chemogenomic features from drug-target interaction networks using interpretable classifiersTabei, Yasuo et al. | 2012
-
Boolean approach to signalling pathway modelling in HGF-induced keratinocyte migrationSingh, Amit et al. | 2012
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Stoichiometric capacitance reveals the theoretical capabilities of metabolic networksLarhlimi, Abdelhalim et al. | 2013
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The architecture of the gene regulatory networks of different tissuesLi, Jie et al. | 2012
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Random sampling of elementary flux modes in large-scale metabolic networksMachado, Daniel et al. | 2012
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Relating drug-protein interaction network with drug side effectsMizutani, Sayaka et al. | 2012
-
Comprehensive estimation of input signals and dynamics in biochemical reaction networksSchelker, M. et al. | 2013
-
Trajectory-oriented Bayesian experiment design versus Fisher A-optimal design: an in depth comparison studyWeber, Patrick et al. | 2012
-
REVEAL--visual eQTL analyticsJäger, Günter et al. | 2012
-
Hybrid spatial Gillespie and particle tracking simulationKlann, Michael et al. | 2012
-
Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditionsScherf, N. et al. | 2012
-
An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKBBell, Michael J. et al. | 2013
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ReLiance: a machine learning and literature-based prioritization of receptor--ligand pairingsIacucci, Ernesto et al. | 2012
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Event extraction across multiple levels of biological organizationPyysalo, Sampo et al. | 2013
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Gene-gene interaction analysis for the survival phenotype based on the Cox modelLee, Seungyeoun et al. | 2013
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Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing dataPfeifer, Nico et al. | 2012
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An accurate paired sample test for count dataPham, Thang V. et al. | 2012
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Bayesian assignment of gene ontology terms to gene expression experimentsSykacek, P. et al. | 2013
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Drug target prediction using adverse event report systems: a pharmacogenomic approachTakarabe, Masataka et al. | 2013
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From phenotype to genotype: an association study of longitudinal phenotypic markers to Alzheimer's disease relevant SNPsWang, Hua et al. | 2013
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A novel approach for resolving differences in single-cell gene expression patterns from zygote to blastocystBuettner, Florian et al. | 2013
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Finding differentially expressed regions of arbitrary length in quantitative genomic data based on marked point process modelHatsuda, Hiroshi et al. | 2013
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PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysisNg, Sam et al. | 2013
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Author Index| 2013