Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways (English)
- New search for: Gruber, A.J.
- New search for: Grandy, W.A.
- New search for: Balwierz, P.J.
- New search for: Dimitrova, Y.A.
- New search for: Pachkov, M.
- New search for: Ciaudo, C.
- New search for: van Nimwegen, E.
- New search for: Zavolan, M.
- New search for: Gruber, A.J.
- New search for: Grandy, W.A.
- New search for: Balwierz, P.J.
- New search for: Dimitrova, Y.A.
- New search for: Pachkov, M.
- New search for: Ciaudo, C.
- New search for: van Nimwegen, E.
- New search for: Zavolan, M.
In:
NUCLEIC ACIDS RESEARCH
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42
, 14
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9313-9326
;
2014
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ISSN:
- Article (Journal) / Print
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Title:Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways
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Contributors:Gruber, A.J. ( author ) / Grandy, W.A. ( author ) / Balwierz, P.J. ( author ) / Dimitrova, Y.A. ( author ) / Pachkov, M. ( author ) / Ciaudo, C. ( author ) / van Nimwegen, E. ( author ) / Zavolan, M. ( author )
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Published in:NUCLEIC ACIDS RESEARCH ; 42, 14 ; 9313-9326
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Publisher:
- New search for: Oxford University Press
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Publication date:2014-01-01
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Size:14 pages
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ISSN:
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Type of media:Article (Journal)
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Type of material:Print
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Language:English
- New search for: 574.8732 / 574
- Further information on Dewey Decimal Classification
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Classification:
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Source:
© Metadata Copyright the British Library Board and other contributors. All rights reserved.
Table of contents – Volume 42, Issue 14
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 8831
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Structure, stability and behaviour of nucleic acids in ionic liquidsTateishi-Karimata, H. / Sugimoto, N. et al. | 2014
- 8845
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Single-cell RNA-seq: advances and future challengesSaliba, A.-E. / Westermann, A.J. / Gorski, S.A. / Vogel, J. et al. | 2014
- 8861
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Road rules for traffic on DNA-systematic analysis of transcriptional roadblocking in vivoHao, N. / Krishna, S. / Ahlgren-Berg, A. / Cutts, E.E. / Shearwin, K.E. / Dodd, I.B. et al. | 2014
- 8873
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The structural code of cyanobacterial genomesLehmann, R. / Machne, R. / Herzel, H. et al. | 2014
- 8884
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VNTRseek-a computational tool to detect tandem repeat variants in high-throughput sequencing dataGelfand, Y. / Hernandez, Y. / Loving, J. / Benson, G. et al. | 2014
- 8895
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Physiological state co-regulates thousands of mammalian mRNA splicing events at tandem splice sites and alternative exonsSzafranski, K. / Fritsch, C. / Schumann, F. / Siebel, L. / Sinha, R. / Hampe, J. / Hiller, M. / Englert, C. / Huse, K. / Platzer, M. et al. | 2014
- 8905
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A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiationTomaru, Y. / Hasegawa, R. / Suzuki, T. / Sato, T. / Kubosaki, A. / Suzuki, M. / Kawaji, H. / Forrest, A.R.R. / Hayashizaki, Y. / FANTOM Consortium et al. | 2014
- 8914
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ADP-ribosyltransferases Parp1 and Parp7 safeguard pluripotency of ES cellsRoper, S.J. / Chrysanthou, S. / Senner, C.E. / Sienerth, A. / Gnan, S. / Murray, A. / Masutani, M. / Latos, P. / Hemberger, M. et al. | 2014
- 8928
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Evidence of efficient stop codon readthrough in four mammalian genesLoughran, G. / Chou, M.-Y. / Ivanov, I.P. / Jungreis, I. / Kellis, M. / Kiran, A.M. / Baranov, P.V. / Atkins, J.F. et al. | 2014
- 8939
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dREAM co-operates with insulator-binding proteins and regulates expression at divergently paired genesKorenjak, M. / Kwon, E. / Morris, R.T. / Anderssen, E. / Amzallag, A. / Ramaswamy, S. / Dyson, N.J. et al. | 2014
- 8954
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Acute hypoxia affects P-TEFb through HDAC3 and HEXIM1-dependent mechanism to promote gene-specific transcriptional repressionSafronova, O.S. / Nakahama, K.-I. / Morita, I. et al. | 2014
- 8970
-
Genome-wide analysis of genetic and epigenetic control of programmed DNA deletionSwart, E.C. / Wilkes, C.D. / Sandoval, P.Y. / Arambasic, M. / Sperling, L. / Nowacki, M. et al. | 2014
- 8984
-
The human Piwi protein Hiwi2 associates with tRNA-derived piRNAs in somatic cellsKeam, S.P. / Young, P.E. / McCorkindale, A.L. / Dang, T.H.Y. / Clancy, J.L. / Humphreys, D.T. / Preiss, T. / Hutvagner, G. / Martin, D.I.K. / Cropley, J.E. et al. | 2014
- 8996
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DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatinMurugesapillai, D. / McCauley, M.J. / Huo, R. / Holte, M.H.N. / Stepanyants, A. / Maher, L.J. / Israeloff, N.E. / Williams, M.C. et al. | 2014
- 9005
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Nuclear dynamics of topoisomerase II? reflects its catalytic activity that is regulated by binding of RNA to the C-terminal domainOnoda, A. / Hosoya, O. / Sano, K. / Kiyama, K. / Kimura, H. / Kawano, S. / Furuta, R. / Miyaji, M. / Tsutsui, K. / Tsutsui, K.M. et al. | 2014
- 9021
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Psip1/Ledgf p75 restrains Hox gene expression by recruiting both trithorax and polycomb group proteinsPradeepa, M.M. / Grimes, G.R. / Taylor, G.C.A. / Sutherland, H.G. / Bickmore, W.A. et al. | 2014
- 9033
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Slow repair of lipid peroxidation-induced DNA damage at p53 mutation hotspots in human cells caused by low turnover of a DNA glycosylaseWoodrick, J. / Gupta, S. / Khatkar, P. / Sarangi, S. / Narasimhan, G. / Trehan, A. / Adhikari, S. / Roy, R. et al. | 2014
- 9047
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DNA damage triggers SAF-A and RNA biogenesis factors exclusion from chromatin coupled to R-loops removalBritton, S. / Dernoncourt, E. / Delteil, C. / Froment, C. / Schiltz, O. / Salles, B. / Frit, P. / Calsou, P. et al. | 2014
- 9063
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The effect of Pot1 binding on the repair of thymine analogs in a telomeric DNA sequenceTheruvathu, J.A. / Darwanto, A. / Hsu, C.W. / Sowers, L.C. et al. | 2014
- 9074
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The mammalian INO80 chromatin remodeling complex is required for replication stress recoveryVassileva, I. / Yanakieva, I. / Peycheva, M. / Gospodinov, A. / Anachkova, B. et al. | 2014
- 9087
-
FANCM-associated proteins MHF1 and MHF2, but not the other Fanconi anemia factors, limit meiotic crossoversGirard, C. / Crismani, W. / Froger, N. / Mazel, J. / Lemhemdi, A. / Horlow, C. / Mercier, R. et al. | 2014
- 9096
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Major capsid reinforcement by a minor protein in herpesviruses and phageSae-Ueng, U. / Liu, T. / Catalano, C.E. / Huffman, J.B. / Homa, F.L. / Evilevitch, A. et al. | 2014
- 9108
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The PARP inhibitor Olaparib disrupts base excision repair of 5-aza-2?-deoxycytidine lesionsOrta, M.L. / Hoglund, A. / Calderon-Montano, J.M. / Dominguez, I. / Burgos-Moron, E. / Visnes, T. / Pastor, N. / Strom, C. / Lopez-lazaro, M. / Helleday, T. et al. | 2014
- 9121
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Estimation of the RNU2 macrosatellite mutation rate by BRCA1 mutation tracingTessereau, C. / Lesecque, Y. / Monnet, N. / Buisson, M. / Barjhoux, L. / Leone, M. / Feng, B. / Goldgar, D.E. / Sinilnikova, O.M. / Mousset, S. et al. | 2014
- 9131
-
Genomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in humna cancerL Abbate, A. / Macchia, G. / D Addabbo, P. / Lonoce, A. / Tolomeo, D. / Trombetta, D. / Kok, K. / Bartenhagen, C. / Whelan, C.W. / Palumbo, O. et al. | 2014
- 9146
-
Sensitive, multiplex and direct quantification of RNA sequences using a modified RASL assayLarman, H.B. / Scott, E.R. / Wogan, M. / Oliveira, G. / Torkamani, A. / Schultz, P.G. et al. | 2014
- 9158
-
metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNADale, R.K. / Matzat, L.H. / Lei, E.P. et al. | 2014
- 9171
-
The effect of tRNA levels on decoding times of mRNA codonsDana, A. / Tuller, T. et al. | 2014
- 9182
-
G-quadruplexes are specifically recognized and distinguished by selected designed ankyrin repeat proteinsScholz, O. / Hansen, S. / Pluckthun, A. et al. | 2014
- 9195
-
Activity-associated miRNA are packaged in Map 1b-enriched exosomes released from depolarized neuronsGoldie, B.J. / Dun, M.D. / Lin, M. / Smith, N.D. / Verrills, N.M. / Dayas, C.V. / Cairns, M.J. et al. | 2014
- 9209
-
Spacing requirements for Class I transcription activation in bacteria are set by promoter elementsZhou, Y. / Kolb, A. / Busby, S.J.W. / Wang, Y.-P. et al. | 2014
- 9217
-
A novel phosphorylation-independent interaction between SMG6 and UPF1 is essential for human NMDNicholson, P. / Josi, C. / Kurosawa, H. / Yamashita, A. / Muhlemann, O. et al. | 2014
- 9236
-
NAR Breakthrough Article: A dimeric state for PRC2Davidovich, C. / Goodrich, K.J. / Gooding, A.R. / Cech, T.R. et al. | 2014
- 9249
-
Molecular basis of nucleotide-dependent substrate engagement and remodeling by an AAA+ activatorDarbari, V.C. / Lawton, E. / Lu, D. / Burrows, P.C. / Wiesler, S. / Joly, N. / Zhang, N. / Zhang, X. / Buck, M. et al. | 2014
- 9262
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In vitro selection of DNA-cleaving deoxyribozyme with site-specific thymidine excision activityWang, M. / Zhang, H. / Zhang, W. / Zhao, Y. / Yasmeen, A. / Zhou, L. / Yu, X. / Tang, Z. et al. | 2014
- 9270
-
The RNA-mediated, asymmetric ring regulatory mechanism of the transcription termination Rho helicase decrypted by time-resolved Nucleotide Analog Interference Probing (trNAIP)Soares, E. / Schwartz, A. / Nollmann, M. / Margeat, E. / Boudvillain, M. et al. | 2014
- 9285
-
Crystal structure of RNase H3-substrate complex reveals parallel evolution of RNA/DNA hybrid recognitionGigiel, M. / Nowotny, M. et al. | 2014
- 9295
-
Microscopic mechanism of DNA damage searching by hOGG1Rowland, M.M. / Schonhoft, J.D. / McKibbin, P.L. / David, S.S. / Stivers, J.T. et al. | 2014
- 9304
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Simulations of DNA topoisomerase 1B bound to supercoiled DNA reveal changes in the flexibility pattern of the enzyme and a secondary protein-DNA binding siteD Annessa, I. / Coletta, A. / Sutthibutpong, T. / Mitchell, J. / Chillemi, G. / Harris, S. / Desideri, A. et al. | 2014
- 9313
-
Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathwaysGruber, A.J. / Grandy, W.A. / Balwierz, P.J. / Dimitrova, Y.A. / Pachkov, M. / Ciaudo, C. / van Nimwegen, E. / Zavolan, M. et al. | 2014
- 9327
-
G-quadruplexes within prion mRNA: the missing link in prion disease?Olsthoorn, R.C.L. et al. | 2014
- 9334
-
The mRNP remodeling mediated by UPF1 promotes rapid degradation of replication-dependent histone mRNAChoe, J. / Ahn, S.H. / Kim, Y.K. et al. | 2014
- 9350
-
Discovery of the ?-barrel-type RNA methyltransferase responsible for Nˆ6-methylation of Nˆ6-threonylcarbamoyladenosine in tRNAsKimura, S. / Miyauchi, K. / Ikeuchi, Y. / Thiaville, P.C. / de Crecy-Lagard, V. / Suzuki, T. et al. | 2014
- 9366
-
Structural determinants of an internal ribosome entry site that direct translational reading frame selectionRen, Q. / Au, H.H.T. / Wang, Q.S. / Lee, S. / Jan, E. et al. | 2014
- 9383
-
A multicopy sRNA of Listeria monocytogenes regulates expression of the virulence adhesin LapBSievers, S. / Lillebaek, E.M.S. / Jacobsen, K. / Lund, A. / Mollerup, M.S. / Nielsen, P.K. / Kallipolitis, B.H. et al. | 2014
- 9399
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Inhibition of RNA binding to hepatitis C virus RNA-dependent RNA polymerase: a new mechanism for antiviral interventionAhmed-Belkacem, A. / Guichou, J.-F. / Brillet, R. / Ahnou, N. / Hernandez, E. / Pallier, C. / Pawlotsky, J.-M. et al. | 2014
- 9410
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Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?Yu, C.-Y. / Liu, H.-J. / Hung, L.-Y. / Kuo, H.-C. / Chuang, T.-J. et al. | 2014
- 9424
-
5? isomiR variation is of functional and evolutionary importanceTan, G.C. / Chan, E. / Molnar, A. / Sarkar, R. / Alexieva, D. / Isa, I.M. / Robinson, S. / Zhang, S. / Ellis, P. / Langford, C.F. et al. | 2014
- 9436
-
Induction and suppression of tick cell antiviral RNAi responses by tick-borne flavivirusesSchnettler, E. / Tykalova, H. / Watson, M. / Sharma, M. / Sterken, M.G. / Obbard, D.J. / Lewis, S.H. / McFarlane, M. / Bell-Sakyi, L. / Barry, G. et al. | 2014
- 9447
-
Phospho-dependent and phospho-independent interactions of the helicase UPF1 with the NMD factors SMG5-SMG7 and SMG6Chakrabarti, S. / Bonneau, F. / Schussler, S. / Eppinger, E. / Conti, E. et al. | 2014
- 9461
-
Formation of circular polyribosomes on eukaryotic mRNA without cap-structure and poly(A)-tail: a cryo electron tomography studyAfonina, Z.A. / Myasnikov, A.G. / Shirokov, V.A. / Klaholz, B.P. / Spirin, A.S. et al. | 2014
- 9470
-
Crystal structure of DnaTˆ84-153-dT10 ssDNA complex reveals a novel single-stranded DNA binding modeLiu, Z. / Chen, P. / Wang, X. / Cai, G. / Niu, L. / Teng, M. / Li, X. et al. | 2014
- 9484
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Engineering modular and tunable genetic amplifiers for scaling transcriptional signals in cascaded gene networksWang, B. / Barahona, M. / Buck, M. et al. | 2014
- 9493
-
In vivo co-localization of enzymes on RNA scaffolds increases metabolic production in a geometrically dependent mannerSachdeva, G. / Garg, A. / Godding, D. / Way, J.C. / Silver, P.A. et al. | 2014
- 9504
-
CRISPR-Cas: an efficient tool for genome engineering of virulent bacteriophagesMartel, B. / Moineau, S. et al. | 2014
- 9514
-
Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeastMazumder, M. / McMillen, D.R. et al. | 2014
- 9523
-
Engineering self-contained DNA circuit for proximity recognition and localized signal amplification of target biomoleculesAng, Y.S. / Yung, L.-Y.L. et al. | 2014
-
ARH-seq: identification of differential splicing in RNA-seq dataRasche, A. / Lienhard, M. / Yaspo, M.-L. / Lehrach, H. / Herwig, R. et al. | 2014
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Comprehensive mutational scanning of a kinase in vivo reveals substrate-dependent fitness landscapesMelnikov, A. / Rogov, P. / Wang, L. / Gnirke, A. / Mikkelsen, T.S. et al. | 2014
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Simultaneous non-contiguous deletions using large synthetic DNA and site-specific recombinasesKrishnakumar, R. / Grose, C. / Haft, D.H. / Zaveri, J. / Alperovich, N. / Gibson, D.G. / Merryman, C. / Glass, J.I. et al. | 2014
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Engineered TAL Effector modulators for the large-scale gain-of-function screeningZhang, H. / Li, J. / Hou, S. / Wang, G. / Jiang, M. / Sun, C. / Hu, X. / Zhuang, F. / Dai, Z. / Dai, J. et al. | 2014
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SigFuge: single gene clustering of RNA-seq reveals differential isoform usage among cancer samplesKimes, P.K. / Cabanski, C.R. / Wilkerson, M.D. / Zhao, N. / Johnson, A.R. / Perou, C.M. / Makowski, L. / Maher, C.A. / Liu, Y. / Marron, J.S. et al. | 2014
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Full-length haplotype reconstruction to infer the structure of heterogeneous virus populationsDi Giallonardo, F. / Topfer, A. / Rey, M. / Prabhakaran, S. / Duport, Y. / Leemann, C. / Schmutz, S. / Campbell, N.K. / Joos, B. / Lecca, M.R. et al. | 2014
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Antagonistic control of a dual-input mammalian gene switch by food additivesXie, M. / Ye, H. / Hamri, G.C.-E. / Fussenegger, M. et al. | 2014