Evaluation of Advanced Precursor Determination for Tandem Mass Tag (TMT)-Based Quantitative Proteomics across Instrument Platforms (Unknown)
- New search for: Myers, Samuel A.
- Further information on Myers, Samuel A.:
- https://orcid.org/0000-0001-7636-0887
- New search for: Klaeger, Susan
- New search for: Satpathy, Shankha
- Further information on Satpathy, Shankha:
- https://orcid.org/0000-0002-6040-4854
- New search for: Viner, Rosa
- New search for: Choi, Jae
- New search for: Rogers, John
- New search for: Clauser, Karl
- New search for: Udeshi, Namrata D.
- New search for: Carr, Steven A.
- New search for: Myers, Samuel A.
- Further information on Myers, Samuel A.:
- https://orcid.org/0000-0001-7636-0887
- New search for: Klaeger, Susan
- New search for: Satpathy, Shankha
- Further information on Satpathy, Shankha:
- https://orcid.org/0000-0002-6040-4854
- New search for: Viner, Rosa
- New search for: Choi, Jae
- New search for: Rogers, John
- New search for: Clauser, Karl
- New search for: Udeshi, Namrata D.
- New search for: Carr, Steven A.
In:
Journal of Proteome Research
;
18
, 1
;
542-547
;
2019
- Article (Journal) / Electronic Resource
-
Title:Evaluation of Advanced Precursor Determination for Tandem Mass Tag (TMT)-Based Quantitative Proteomics across Instrument Platforms
-
Additional title:J. Proteome Res.
-
Contributors:Myers, Samuel A. ( author ) / Klaeger, Susan ( author ) / Satpathy, Shankha ( author ) / Viner, Rosa ( author ) / Choi, Jae ( author ) / Rogers, John ( author ) / Clauser, Karl ( author ) / Udeshi, Namrata D. ( author ) / Carr, Steven A. ( author )
-
Published in:Journal of Proteome Research ; 18, 1 ; 542-547
-
Publisher:
- New search for: American Chemical Society
-
Publication date:2019-01-04
-
ISSN:
-
Coden:
-
DOI:
-
Type of media:Article (Journal)
-
Type of material:Electronic Resource
-
Language:Unknown
-
Keywords:
-
Source:
Table of contents – Volume 18, Issue 1
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1
-
Precision Medicine: Role of Proteomics in Changing Clinical Management and CareVan Eyk, Jennifer E. / Snyder, Michael P. et al. | 2019
- 7
-
Host Proteins Identified in Extracellular Viral Particles as Targets for Broad-Spectrum Antiviral InhibitorsGale, Trevor V. / Horton, Timothy M. / Hoffmann, Andrew R. / Branco, Luis M. / Garry, Robert F. et al. | 2019
- 18
-
Development of a Parallel Reaction Monitoring-MS Method To Quantify IGF Proteins in Dogs and a Case of Nonislet Cell Tumor HypoglycemiaValdés, Alberto / Lewitt, Moira / Wiss, Erica / Ramström, Margareta / Strage, Emma M. et al. | 2019
- 30
-
Obesity Development in a Miniature Yucatan Pig Model: A Multi-compartmental Metabolomics Study on Cloned and Normal Pigs Fed Restricted or Ad Libitum High-Energy DietsCurtasu, Mihai V. / Knudsen, Knud Erik B. / Callesen, Henrik / Purup, Stig / Stagsted, Jan / Hedemann, Mette S. et al. | 2019
- 48
-
LC–MS-Based Metabolomics and Lipidomics Study of High-Density-Lipoprotein-Modulated Glucose Metabolism with an apoA‑I Knockout Mouse ModelLiu, Jia / Zhao, Mingming / Zhu, Yizhang / Wang, Xu / Zheng, Lemin / Yin, Yuxin et al. | 2019
- 57
-
Metabolomic Profiling Reveals That Reprogramming of Cerebral Glucose Metabolism Is Involved in Ischemic Preconditioning-Induced Neuroprotection in a Rodent Model of Ischemic StrokeGeng, Jianliang / Zhang, Yue / Li, Sijia / Li, Shuning / Wang, Jiankun / Wang, Hong / Aa, Jiye / Wang, Guangji et al. | 2019
- 69
-
Characterization of the Blister Fluid Proteome for Pediatric Burn ClassificationZang, Tuo / Cuttle, Leila / Broszczak, Daniel A. / Broadbent, James A. / Tanzer, Catherine / Parker, Tony J. et al. | 2019
- 86
-
Joint Precursor Elution Profile Inference via Regression for Peptide Detection in Data-Independent Acquisition Mass SpectraHu, Alex / Lu, Yang Young / Bilmes, Jeff / Noble, William Stafford et al. | 2019
- 95
-
A Well-Controlled BioID Design for Endogenous Bait ProteinsVandemoortele, Giel / De Sutter, Delphine / Moliere, Aline / Pauwels, Jarne / Gevaert, Kris / Eyckerman, Sven et al. | 2019
- 107
-
Global Identification of Protein Complexes within the Membrane Proteome of Arabidopsis Roots Using a SEC-MS ApproachGilbert, Max / Schulze, Waltraud X. et al. | 2019
- 120
-
200+ Protein Concentrations in Healthy Human Blood Plasma: Targeted Quantitative SRM SIS Screening of Chromosomes 18, 13, Y, and the Mitochondrial Chromosome Encoded ProteomeKopylov, Arthur T. / Ponomarenko, Elena A. / Ilgisonis, Ekaterina V. / Pyatnitskiy, Mikhail A. / Lisitsa, Andrey V. / Poverennaya, Ekaterina V. / Kiseleva, Olga I. / Farafonova, Tatiana E. / Tikhonova, Olga V. / Zavialova, Maria G. et al. | 2019
- 120
-
200+ Protein Concentrations in Healthy Human Blood Plasma: Targeted Quantitative SRM SIS Screening of Chromosomes 18, 13, Y, the Mitochondrial Chromosome Encoded ProteomeKopylov, Arthur T. / Ponomarenko, Elena A. / Ilgisonis, Ekaterina V. / Pyatnitskiy, Mikhail A. / Lisitsa, Andrey V. / Poverennaya, Ekaterina V. / Kiseleva, Olga I. / Farafonova, Tatiana E. / Tikhonova, Olga V. / Zavialova, Maria G. et al. | 2019
- 130
-
NMR-Based Serum Metabolomics Revealed Distinctive Metabolic Patterns in Reactive Arthritis Compared with Rheumatoid ArthritisDubey, Durgesh / Kumar, Sandeep / Chaurasia, Smriti / Guleria, Anupam / Ahmed, Sakir / Singh, Rajeev / Kumari, Reena / Modi, Dinesh Raj / Misra, Ramnath / Kumar, Dinesh et al. | 2019
- 147
-
msCRUSH: Fast Tandem Mass Spectral Clustering Using Locality Sensitive HashingWang, Lei / Li, Sujun / Tang, Haixu et al. | 2019
- 159
-
Vegetable Signatures Derived from Human Urinary Metabolomic Data in Controlled Feeding StudiesLynn, Ke-Shiuan / Cheng, Mei-Ling / Yang, Hsin-Chou / Liang, Yu-Jen / Kang, Mei-Jyh / Chen, Fong-Ling / Shiao, Ming-Shi / Pan, Wen-Harn et al. | 2019
- 169
-
Flow Cytometry Has a Significant Impact on the Cellular MetabolomeBinek, Aleksandra / Rojo, David / Godzien, Joanna / Rupérez, Francisco Javier / Nuñez, Vanessa / Jorge, Inmaculada / Ricote, Mercedes / Vázquez, Jesús / Barbas, Coral et al. | 2019
- 182
-
Targeted Ubiquitin-Proteasomal Proteolysis Pathway in Chronic Social Defeat StressLin, Hsiao-Yun / Liu, Yu-Shu / Liu, Yu-Ching / Chen, Chao-Jung / Lu, Dah-Yuu et al. | 2019
- 191
-
Comparative Proteomic Analysis Reveals That Antioxidant System and Soluble Sugar Metabolism Contribute to Salt Tolerance in Alfalfa (Medicago sativa L.) LeavesGao, Yanli / Long, Ruicai / Kang, Junmei / Wang, Zhen / Zhang, Tiejun / Sun, Hao / Li, Xiao / Yang, Qingchuan et al. | 2019
- 204
-
Large-Scale Modeling Approach Reveals Functional Metabolic Shifts during Hepatic DifferentiationPoupin, Nathalie / Corlu, Anne / Cabaton, Nicolas J. / Dubois-Pot-Schneider, Hélène / Canlet, Cécile / Person, Elodie / Bruel, Sandrine / Frainay, Clément / Vinson, Florence / Maurier, Florence et al. | 2019
- 217
-
Multiple-Enzyme-Digestion Strategy Improves Accuracy and Sensitivity of Label- and Standard-Free Absolute Quantification to a Level That Is Achievable by Analysis with Stable Isotope-Labeled Standard SpikingWiśniewski, Jacek R / Wegler, Christine / Artursson, Per et al. | 2019
- 225
-
Discovery and Quantification of Nonhuman Proteins in Human MilkZhu, Jing / Garrigues, Luc / Van den Toorn, Henk / Stahl, Bernd / Heck, Albert J. R. et al. | 2019
- 239
-
Metabolomic Approaches Reveal the Role of CAR in Energy MetabolismChen, Fengming / Coslo, Denise M. / Chen, Tao / Zhang, Limin / Tian, Yuan / Smith, Philip B. / Patterson, Andrew D. / Omiecinski, Curtis J. et al. | 2019
- 252
-
Complementary iTRAQ Proteomic and Transcriptomic Analyses of Leaves in Tea Plant (Camellia sinensis L.) with Different Maturity and Regulatory Network of Flavonoid BiosynthesisWu, Liang-Yu / Fang, Zhou-Tao / Lin, Jin-Ke / Sun, Yun / Du, Zhi-Zheng / Guo, Ya-Ling / Liu, Jiang-Hong / Liang, Yue-Rong / Ye, Jian-Hui et al. | 2019
- 265
-
Toward the Quantitative Characterization of Arginine Phosphorylations in Staphylococcus aureusJunker, Sabryna / Maaß, Sandra / Otto, Andreas / Hecker, Michael / Becher, Dörte et al. | 2019
- 280
-
Extended Sialylated O‑Glycan Repertoire of Human Urinary Glycoproteins Discovered and Characterized Using Electron-Transfer/Higher-Energy Collision DissociationDarula, Zsuzsanna / Pap, Ádám / Medzihradszky, Katalin F. et al. | 2019
- 292
-
Large-Scale Longitudinal Metabolomics Study Reveals Different Trimester-Specific Alterations of Metabolites in Relation to Gestational Diabetes MellitusZhao, Hongzhi / Li, Han / Chung, Arthur Chi Kong / Xiang, Li / Li, Xiaona / Zheng, Yuanyuan / Luan, Hemi / Zhu, Lin / Liu, Wenyu / Peng, Yang et al. | 2019
- 301
-
Proteogenomic Analyses of Cellular Lysates Using a Phenol-Guanidinium Thiocyanate ReagentKawashima, Yusuke / Miyata, Jun / Watanabe, Takashi / Shioya, Juri / Arita, Makoto / Ohara, Osamu et al. | 2019
- 309
-
Site-Specific K63 Ubiquitinomics Provides Insights into Translation Regulation under StressBack, Songhee / Gorman, Andrew W. / Vogel, Christine / Silva, Gustavo M. et al. | 2019
- 319
-
Identification of Novel Dense-Granule Proteins in Toxoplasma gondii by Two Proximity-Based Biotinylation ApproachesPan, Ming / Li, Mingjun / Li, Longjiao / Song, Yongle / Hou, Lun / Zhao, Junlong / Shen, Bang et al. | 2019
- 331
-
Loss of SETD2 Induces a Metabolic Switch in Renal Cell Carcinoma Cell Lines toward Enhanced Oxidative PhosphorylationLiu, Jingping / Hanavan, Paul D. / Kras, Katon / Ruiz, Yvette W. / Castle, Erik P. / Lake, Douglas F. / Chen, Xianfeng / O’Brien, Daniel / Luo, Huijun / Robertson, Keith D. et al. | 2019
- 341
-
Insights into the Effects of Crack Abuse on the Human Metabolome Using a NMR ApproachCosta, Tássia B. B. C. / Lacerda, Acioly L. T. / Mas, Caroline Dal / Brietzke, Elisa / Pontes, João G. M. / Marins, Lucas A. N. / Martins, Lucas G. / Nunes, Marcel V. / Pedrini, Mariana / Carvalho, Michelle S. C. et al. | 2019
- 349
-
Global Identification of Post-Translationally Spliced Peptides with Neo-FusionRolfs, Zach / Solntsev, Stefan K. / Shortreed, Michael R. / Frey, Brian L. / Smith, Lloyd M. et al. | 2019
- 359
-
Differential Quantitative Determination of Site-Specific Intact N‑Glycopeptides in Serum Haptoglobin between Hepatocellular Carcinoma and Cirrhosis Using LC-EThcD-MS/MSZhu, Jianhui / Chen, Zhengwei / Zhang, Jie / An, Mingrui / Wu, Jing / Yu, Qing / Skilton, St. John / Bern, Marshall / Ilker Sen, K. / Li, Lingjun et al. | 2019
- 372
-
Comparative Glycomics Study of Cell-Surface N‑Glycomes of HepG2 versus LO2 Cell LinesHan, Yuyin / Xiao, Kaijie / Tian, Zhixin et al. | 2019
- 380
-
Multiplex Assay for Quantification of Acute Phase Proteins and Immunoglobulin A in Dried Blood SpotsVidova, Veronika / Stuchlikova, Eliska / Vrbova, Marketa / Almasi, Martina / Klanova, Jana / Thon, Vojtech / Spacil, Zdenek et al. | 2019
- 392
-
A Peptide-Level Fully Annotated Data Set for Quantitative Evaluation of Precursor-Aware Mass Spectrometry Data Processing AlgorithmsHenning, Jessica / Tostengard, Annika / Smith, Rob et al. | 2019
- 399
-
Accelerated Barocycler Lysis and Extraction Sample Preparation for Clinical Proteomics by Mass SpectrometryLucas, Natasha / Robinson, Andrew B. / Marcker Espersen, Maiken / Mahboob, Sadia / Xavier, Dylan / Xue, Jing / Balleine, Rosemary L. / deFazio, Anna / Hains, Peter G. / Robinson, Phillip J. et al. | 2019
- 406
-
RNA-Binding Proteomics Reveals MATR3 Interacting with lncRNA SNHG1 To Enhance Neuroblastoma ProgressionYang, Tz-Wen / Sahu, Divya / Chang, Yi-Wen / Hsu, Chia-Lang / Hsieh, Chiao-Hui / Huang, Hsuan-Cheng / Juan, Hsueh-Fen et al. | 2019
- 417
-
Single Amino Acid Variant Discovery in Small Numbers of CellsTan, Zhijing / Yi, Xinpei / Carruthers, Nicholas J. / Stemmer, Paul M. / Lubman, David M. et al. | 2019
- 426
-
Data-Independent Acquisition Mass Spectrometry To Quantify Protein Levels in FFPE Tumor Biopsies for Molecular DiagnosticsKim, Yeoun Jin / Sweet, Steve M. M. / Egertson, Jarrett D. / Sedgewick, Andrew J. / Woo, Sunghee / Liao, Wei-li / Merrihew, Gennifer E. / Searle, Brian C. / Vaske, Charlie / Heaton, Robert et al. | 2019
- 436
-
Unique Diversity of Sting-Related Toxins Based on Transcriptomic and Proteomic Analysis of the Jellyfish Cyanea capillata and Nemopilema nomurai (Cnidaria: Scyphozoa)Wang, Chao / Wang, Beilei / Wang, Bo / Wang, Qianqian / Liu, Guoyan / Wang, Tao / He, Qian / Zhang, Liming et al. | 2019
- 449
-
Large-Scale Proteomic Identification of Targets of Cellular miR-197 Downregulated by Enterovirus A71Tang, Wen-Fang / Huang, Ru-Ting / Chien, Kun-Yi / Tang, Petrus / Horng, Jim-Tong et al. | 2019
- 461
-
Multiparameter Optimization of Two Common Proteomics Quantification Methods for Quantifying Low-Abundance ProteinsZhang, Chengqian / Shi, Zhaomei / Han, Ying / Ren, Yan / Hao, Piliang et al. | 2019
- 469
-
HST-MRM-MS: A Novel High-Sample-Throughput Multiple Reaction Monitoring Mass Spectrometric Method for Multiplex Absolute Quantitation of Hepatocellular Carcinoma Serum BiomarkerJiang, Hucong / Zhang, Lei / Zhang, Ying / Xie, Liqi / Wang, Yi / Lu, Haojie et al. | 2019
- 478
-
Colonic Proteome Signature in Immunoproteasome-Deficient Stressed Mice and Its Relevance for Irritable Bowel SyndromeGoichon, Alexis / Bahlouli, Wafa / Ghouzali, Ibtissem / Chan, Philippe / Vaudry, David / Déchelotte, Pierre / Ducrotté, Philippe / Coëffier, Moïse et al. | 2019
- 493
-
Global Ion Suppression Limits the Potential of Mass Spectrometry Based PhosphoproteomicsDreier, Roland Felix / Ahrné, Erik / Broz, Petr / Schmidt, Alexander et al. | 2019
- 508
-
Proteomic Profiling of Human Hepatic Stellate Cell Line LX2 Responses to Irradiation and TGF-β1Yuan, Baoying / Chen, Yuhan / Wu, Zhifeng / Zhang, Li / Zhuang, Yuan / Zhao, Xiaomei / Niu, Hao / Cheng, Jason Chia-Hsien / Zeng, Zhaochong et al. | 2019
- 522
-
Dasatinib Is Preferentially Active in the Activated B‑Cell Subtype of Diffuse Large B‑Cell LymphomaCann, Marissa L. / Herring, Laura E. / Haar, Lauren L. / Gilbert, Thomas S. K. / Goldfarb, Dennis / Richards, Kristy L. / Graves, Lee M. / Lawrence, David S. et al. | 2019
- 535
-
apQuant: Accurate Label-Free Quantification by Quality FilteringDoblmann, Johannes / Dusberger, Frederico / Imre, Richard / Hudecz, Otto / Stanek, Florian / Mechtler, Karl / Dürnberger, Gerhard et al. | 2019
- 542
-
Evaluation of Advanced Precursor Determination for Tandem Mass Tag (TMT)-Based Quantitative Proteomics across Instrument PlatformsMyers, Samuel A. / Klaeger, Susan / Satpathy, Shankha / Viner, Rosa / Choi, Jae / Rogers, John / Clauser, Karl / Udeshi, Namrata D. / Carr, Steven A. et al. | 2019
- 548
-
Assessing Automated Sample Preparation Technologies for High-Throughput Proteomics of Frozen Well Characterized Tissues from Swedish BiobanksKuras, Magdalena / Betancourt, Lazaro Hiram / Rezeli, Melinda / Rodriguez, Jimmy / Szasz, Marcell / Zhou, Qimin / Miliotis, Tasso / Andersson, Roland / Marko-Varga, Gyorgy et al. | 2019
- 557
-
Ultraviolet Photodissociation of ESI- and MALDI-Generated Protein Ions on a Q‑Exactive Mass SpectrometerDilillo, Marialaura / de Graaf, Erik L. / Yadav, Avinash / Belov, Mikhail E. / McDonnell, Liam A. et al. | 2019
- 565
-
TKO6: A Peptide Standard To Assess Interference for Unit-Resolved Isobaric Labeling PlatformsPaulo, Joao A. / Navarrete-Perea, Jose / Guha Thakurta, Sanjukta / Gygi, Steven P. et al. | 2019
- 571
-
Distinguishing between Spectral Clustering and Cluster Analysis of Mass SpectraBorges, Hélène / Guibert, Romain / Permiakova, Olga / Burger, Thomas et al. | 2019
- 574
-
Response to “Determining Allele-Specific Protein Expression (ASPE) Using a Novel Quantitative Concatamer Based Proteomics Method”Achour, Brahim / Rostami-Hodjegan, Amin / Barber, Jill et al. | 2019