Rapid and Deep Profiling of Human Induced Pluripotent Stem Cell Proteome by One-shot NanoLC–MS/MS Analysis with Meter-scale Monolithic Silica Columns (Unknown)
- New search for: Yamana, Ryota
- New search for: Iwasaki, Mio
- New search for: Wakabayashi, Masaki
- New search for: Nakagawa, Masato
- New search for: Yamanaka, Shinya
- New search for: Ishihama, Yasushi
- New search for: Yamana, Ryota
- New search for: Iwasaki, Mio
- New search for: Wakabayashi, Masaki
- New search for: Nakagawa, Masato
- New search for: Yamanaka, Shinya
- New search for: Ishihama, Yasushi
In:
Journal of Proteome Research
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12
, 1
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214-221
;
2013
- Article (Journal) / Electronic Resource
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Title:Rapid and Deep Profiling of Human Induced Pluripotent Stem Cell Proteome by One-shot NanoLC–MS/MS Analysis with Meter-scale Monolithic Silica Columns
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Additional title:J. Proteome Res.
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Contributors:Yamana, Ryota ( author ) / Iwasaki, Mio ( author ) / Wakabayashi, Masaki ( author ) / Nakagawa, Masato ( author ) / Yamanaka, Shinya ( author ) / Ishihama, Yasushi ( author )
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Published in:Journal of Proteome Research ; 12, 1 ; 214-221
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Publisher:
- New search for: American Chemical Society
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Publication date:2013-01-04
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ISSN:
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Coden:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:Unknown
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Keywords:
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Source:
Table of contents – Volume 12, Issue 1
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1
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A First Step Toward Completion of a Genome-Wide Characterization of the Human ProteomeMarko-Varga, Gyorgy / Omenn, Gilbert S. / Paik, Young-Ki / Hancock, William S. et al. | 2013
- 6
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A Fresh Look at the Male-specific Region of the Human Y ChromosomeJangravi, Zohreh / Alikhani, Mehdi / Arefnezhad, Babak / Sharifi Tabar, Mehdi / Taleahmad, Sara / Karamzadeh, Razieh / Jadaliha, Mahdieh / Mousavi, Seyed Ahmad / Ahmadi Rastegar, Diba / Parsamatin, Pouria et al. | 2013
- 23
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The Biology/Disease-driven Human Proteome Project (B/D-HPP): Enabling Protein Research for the Life Sciences CommunityAebersold, Ruedi / Bader, Gary D. / Edwards, Aled M. / van Eyk, Jennifer E. / Kussmann, Martin / Qin, Jun / Omenn, Gilbert S. et al. | 2013
- 28
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The Chromosome-Centric Human Proteome Project: A Call to ActionHühmer, Andreas F. R. / Paulus, Aran / Martin, LeRoy B. / Millis, Kevin / Agreste, Tasha / Saba, Julian / Lill, Jennie R. / Fischer, Steven M. / Dracup, William / Lavery, Paddy et al. | 2013
- 33
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Decoding the Disease-Associated Proteins Encoded in the Human Chromosome 4Chen, Lien-Chin / Liu, Mei-Ying / Hsiao, Yung-Chin / Choong, Wai-Kok / Wu, Hsin-Yi / Hsu, Wen-Lian / Liao, Pao-Chi / Sung, Ting-Yi / Tsai, Shih-Feng / Yu, Jau-Song et al. | 2013
- 45
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A Chromosome-centric Human Proteome Project (C-HPP) to Characterize the Sets of Proteins Encoded in Chromosome 17Liu, Suli / Im, Hogune / Bairoch, Amos / Cristofanilli, Massimo / Chen, Rui / Deutsch, Eric W. / Dalton, Stephen / Fenyo, David / Fanayan, Susan / Gates, Chris et al. | 2013
- 58
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Integrated View of the Human Chromosome X‑centric Proteome ProjectYamamoto, Tadashi / Nakayama, Keiichi / Hirano, Hisashi / Tomonaga, Takeshi / Ishihama, Yasushi / Yamada, Tetsushi / Kondo, Tadashi / Kodera, Yoshio / Sato, Yuichi / Araki, Norie et al. | 2013
- 62
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Full-length Transcriptome-based H‑InvDB Throws a New Light on Chromosome-centric ProteomicsImanishi, Tadashi / Nagai, Yoko / Habara, Takuya / Yamasaki, Chisato / Takeda, Jun-ichi / Mikami, Sayaka / Bando, Yasuhiko / Tojo, Hiromasa / Nishimura, Toshihide et al. | 2013
- 67
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First Proteomic Exploration of Protein-Encoding Genes on Chromosome 1 in Human Liver, Stomach, and ColonWu, Songfeng / Li, Ning / Ma, Jie / Shen, Huali / Jiang, Dahai / Chang, Cheng / Zhang, Chengpu / Li, Liwei / Zhang, Hongxing / Jiang, Jing et al. | 2013
- 81
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Proteome Atlas of Human Chromosome 8 and Its Multiple 8p Deficiencies in Tumorigenesis of the Stomach, Colon, and LiverZhang, Yang / Yan, Guoquan / Zhai, Linhui / Xu, Shaohang / Shen, Huali / Yao, Jun / Wu, Feifei / Xie, Liqi / Tang, Hailin / Yu, Hongxiu et al. | 2013
- 89
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Chromosome 7‑Centric Analysis of Proteomics Data from a Panel of Human Colon Carcinoma Cell LinesFanayan, Susan / Smith, Joshua T. / Sethi, Manveen K. / Cantor, David / Goode, Robert / Simpson, Richard J. / Baker, Mark S. / Hancock, William S. / Nice, Edouard et al. | 2013
- 97
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Chromosome 11-Centric Human Proteome Analysis of Human Brain Hippocampus TissueKwon, Kyung-Hoon / Kim, Jin Young / Kim, Se-Young / Min, Hye Kyeong / Lee, Hyoung-Joo / Ji, In Jung / Kang, Taewook / Park, Gun Wook / An, Hyun Joo / Lee, Bonghee et al. | 2013
- 106
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GenomewidePDB, a Proteomic Database Exploring the Comprehensive Protein Parts List and Transcriptome Landscape in Human ChromosomesJeong, Seul-Ki / Lee, Hyoung-Joo / Na, Keun / Cho, Jin-Young / Lee, Min Jung / Kwon, Ja-Young / Kim, Hoguen / Park, Young-Mok / Yoo, Jong Shin / Hancock, William S. et al. | 2013
- 112
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Spanish Human Proteome Project: Dissection of Chromosome 16Segura, V. / Medina-Aunon, J. A. / Guruceaga, E. / Gharbi, S. I. / González-Tejedo, C. / Sánchez del Pino, M. M. / Canals, F. / Fuentes, M. / Casal, J. Ignacio / Martínez-Bartolomé, S. et al. | 2013
- 123
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Chromosome 18 Transcriptome Profiling and Targeted Proteome Mapping in Depleted Plasma, Liver Tissue and HepG2 CellsZgoda, Victor G. / Kopylov, Arthur T. / Tikhonova, Olga V. / Moisa, Alexander A. / Pyndyk, Nadezhda V. / Farafonova, Tatyana E. / Novikova, Svetlana E. / Lisitsa, Andrey V. / Ponomarenko, Elena A. / Poverennaya, Ekaterina V. et al. | 2013
- 135
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Chromosome 19 Annotations with Disease Speciation: A First Report from the Global Research ConsortiumNilsson, Carol L. / Berven, Frode / Selheim, Frode / Liu, Huiling / Moskal, Joseph R. / Kroes, Roger A. / Sulman, Erik P. / Conrad, Charles A. / Lang, Frederick F. / Andrén, Per E. et al. | 2013
- 151
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Qualitative and Quantitative Expression Status of the Human Chromosome 20 Genes in Cancer Tissues and the Representative Cell LinesWang, Quanhui / Wen, Bo / Yan, Guangrong / Wei, Junying / Xie, Liqi / Xu, Shaohang / Jiang, Dahai / Wang, Tingyou / Lin, Liang / Zi, Jin et al. | 2013
- 162
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The State of the Human Proteome in 2012 as Viewed through PeptideAtlasFarrah, Terry / Deutsch, Eric W. / Hoopmann, Michael R. / Hallows, Janice L. / Sun, Zhi / Huang, Chung-Ying / Moritz, Robert L. et al. | 2013
- 172
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The Proteome Browser Web PortalGoode, Robert J. A. / Yu, Simon / Kannan, Anitha / Christiansen, Jeffrey H. / Beitz, Anthony / Hancock, William S. / Nice, Edouard / Smith, A. Ian et al. | 2013
- 179
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CAPER: a Chromosome-Assembled human Proteome browsERGuo, Feifei / Wang, Dan / Liu, Zhongyang / Lu, Liang / Zhang, Wei / Sun, Haiyan / Zhang, Hongxing / Ma, Jie / Wu, Songfeng / Li, Ning et al. | 2013
- 187
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Top-down Targeted Proteomics for Deep Sequencing of Tropomyosin IsoformsPeng, Ying / Chen, Xin / Zhang, Han / Xu, Qingge / Hacker, Timothy A. / Ge, Ying et al. | 2013
- 199
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A Periodate-Cleavable Linker for Functional Proteomics under Slightly Acidic Conditions: Application for the Analysis of Intracellular Aspartic ProteasesMaurer, Andreas / Zeyher, Claus / Amin, Bushra / Kalbacher, Hubert et al. | 2013
- 208
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In-depth Membrane Proteomic Study of Breast Cancer Tissues for the Generation of a Chromosome-based Protein ListMuraoka, Satoshi / Kume, Hideaki / Adachi, Jun / Shiromizu, Takashi / Watanabe, Shio / Masuda, Takeshi / Ishihama, Yasushi / Tomonaga, Takeshi et al. | 2013
- 214
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Rapid and Deep Profiling of Human Induced Pluripotent Stem Cell Proteome by One-shot NanoLC–MS/MS Analysis with Meter-scale Monolithic Silica ColumnsYamana, Ryota / Iwasaki, Mio / Wakabayashi, Masaki / Nakagawa, Masato / Yamanaka, Shinya / Ishihama, Yasushi et al. | 2013
- 222
-
Standardized Protocols for Quality Control of MRM-based Plasma Proteomic WorkflowsPercy, Andrew J. / Chambers, Andrew G. / Smith, Derek S. / Borchers, Christoph H. et al. | 2013
- 234
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Screening Method Using Selected Reaction Monitoring for Targeted Proteomics Studies of Nasal Lavage FluidMörtstedt, Harriet / Kåredal, Monica H. / Jönsson, Bo A. G. / Lindh, Christian H. et al. | 2013
- 248
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Comprehensive Profiling of N‑Linked Glycosylation Sites in HeLa Cells Using Hydrazide EnrichmentMalerod, Helle / Graham, Robert L. J. / Sweredoski, Michael J. / Hess, Sonja et al. | 2013
- 260
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Toward a Comprehensive Characterization of a Human Cancer Cell PhosphoproteomeZhou, Houjiang / Di Palma, Serena / Preisinger, Christian / Peng, Mao / Polat, Ayse Nur / Heck, Albert J. R. / Mohammed, Shabaz et al. | 2013
- 272
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Discovery of Cell Compartment Specific Protein–Protein Interactions using Affinity Purification Combined with Tandem Mass SpectrometryLavallée-Adam, Mathieu / Rousseau, Justine / Domecq, Céline / Bouchard, Annie / Forget, Diane / Faubert, Denis / Blanchette, Mathieu / Coulombe, Benoit et al. | 2013
- 282
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Characterization of Carbonic Anhydrase IX Interactome Reveals Proteins Assisting Its Nuclear Localization in Hypoxic CellsBuanne, Pasquale / Renzone, Giovanni / Monteleone, Francesca / Vitale, Monica / Monti, Simona Maria / Sandomenico, AnnaMaria / Garbi, Corrado / Montanaro, Donatella / Accardo, Marina / Troncone, Giancarlo et al. | 2013
- 293
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neXtProt: Organizing Protein Knowledge in the Context of Human Proteome ProjectsGaudet, Pascale / Argoud-Puy, Ghislaine / Cusin, Isabelle / Duek, Paula / Evalet, Olivier / Gateau, Alain / Gleizes, Anne / Pereira, Mario / Zahn-Zabal, Monique / Zwahlen, Catherine et al. | 2013
- 299
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RNA Deep Sequencing as a Tool for Selection of Cell Lines for Systematic Subcellular Localization of All Human ProteinsDanielsson, Frida / Wiking, Mikaela / Mahdessian, Diana / Skogs, Marie / Ait Blal, Hammou / Hjelmare, Martin / Stadler, Charlotte / Uhlén, Mathias / Lundberg, Emma et al. | 2013
- 308
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Tryptic Peptide Reference Data Sets for MALDI Imaging Mass Spectrometry on Formalin-fixed Ovarian Cancer TissuesMeding, Stephan / Martin, Karina / Gustafsson, Ove J. R. / Eddes, James S. / Hack, Sandra / Oehler, Martin K. / Hoffmann, Peter et al. | 2013
- 316
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Novel Phosphorylation Sites in the S. cerevisiae Cdc13 Protein Reveal New Targets for Telomere Length RegulationWu, Yun / DiMaggio, Peter A. / Perlman, David H. / Zakian, Virginia A. / Garcia, Benjamin A. et al. | 2013
- 328
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Binomial Probability Distribution Model-Based Protein Identification Algorithm for Tandem Mass Spectrometry Utilizing Peak Intensity InformationXiao, Chuan-Le / Chen, Xiao-Zhou / Du, Yang-Li / Sun, Xuesong / Zhang, Gong / He, Qing-Yu et al. | 2013
- 336
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Identification of Potential Universal Vaccine Candidates against Group A Streptococcus by Using High Throughput in Silico and Proteomics ApproachSharma, Abhinay / Arya, Deepak Kumar / Sagar, Vivek / Bergmann, René / Chhatwal, Gursharan Singh / Johri, Atul Kumar et al. | 2013
- 347
-
Role of the Saturated Nonesterified Fatty Acid Palmitate in Beta Cell DysfunctionMaris, Michael / Robert, Sofie / Waelkens, Etienne / Derua, Rita / Hernangomez, Miriam H. / D’Hertog, Wannes / Cnop, Miriam / Mathieu, Chantal / Overbergh, Lut et al. | 2013
- 363
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Quantitative Proteomics by Amino Acid Labeling in Foot-and-Mouth Disease Virus (FMDV)-Infected CellsYe, Yu / Yan, Guangrong / Luo, Yongwen / Tong, Tiezhu / Liu, Xiangtao / Xin, Chaoan / Liao, Ming / Fan, Huiying et al. | 2013
- 378
-
Sulfated Hyaluronan Containing Collagen Matrices Enhance Cell-Matrix-Interaction, Endocytosis, and Osteogenic Differentiation of Human Mesenchymal Stromal CellsKliemt, Stefanie / Lange, Claudia / Otto, Wolfgang / Hintze, Vera / Möller, Stephanie / von Bergen, Martin / Hempel, Ute / Kalkhof, Stefan et al. | 2013
- 390
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Quantitative Proteome of Medulla Oblongata in Spontaneously Hypertensive RatsSun, Dongmei / Cheng, Yu / Zhou, Danfeng / Liu, Tanshu / Chen, Shaoqin / Liang, Jing / Tang, Chunzhi / Lai, Xinsheng et al. | 2013
- 396
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Production of Glycosylated Soluble Amyloid Precursor Protein Alpha (sAPPalpha) in Leishmania tarentolaeKlatt, Stephan / Rohe, Michael / Alagesan, Kathirvel / Kolarich, Daniel / Konthur, Zoltán / Hartl, Daniela et al. | 2013
- 404
-
Proteomic Analysis of the Royal Jelly and Characterization of the Functions of its Derivation Glands in the HoneybeeFujita, Toshiyuki / Kozuka-Hata, Hiroko / Ao-Kondo, Hiroko / Kunieda, Takekazu / Oyama, Masaaki / Kubo, Takeo et al. | 2013
- 412
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Digging Deeper into the Field of the Small Cell Lung Cancer Tumor Marker ProGRP: A Method for Differentiation of Its IsoformsTorsetnes, Silje Bøen / Nordlund, Marianne Sparby / Paus, Elisabeth / Halvorsen, Trine Grønhaug / Reubsaet, Léon et al. | 2013
- 421
-
Molecular Mechanisms of Selective Estrogen Receptor Modulator Activity in Human Breast Cancer Cells: Identification of Novel Nuclear Cofactors of Antiestrogen-ER alpha Complexes by Interaction ProteomicsCirillo, F. / Nassa, G. / Tarallo, R. / Stellato, C. / De Filippo, M.R. / Ambrosino, C. / Baumann, M. / Nyman, T.A. / Weisz, A. et al. | 2013
- 421
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Molecular Mechanisms of Selective Estrogen Receptor Modulator Activity in Human Breast Cancer Cells: Identification of Novel Nuclear Cofactors of Antiestrogen–ERα Complexes by Interaction ProteomicsCirillo, Francesca / Nassa, Giovanni / Tarallo, Roberta / Stellato, Claudia / Filippo, Maria Rosaria De / Ambrosino, Concetta / Baumann, Marc / Nyman, Tuula A. / Weisz, Alessandro et al. | 2013
- 432
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Proteomic and Transcriptional Analysis of Lactobacillus johnsonii PF01 during Bile Salt Exposure by iTRAQ Shotgun Proteomics and Quantitative RT-PCRLee, Ji Yoon / Pajarillo, Edward Alain B. / Kim, Min Jeong / Chae, Jong Pyo / Kang, Dae-Kyung et al. | 2013
- 444
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Characterization of Fibrinogen Glycosylation and Its Importance for Serum/Plasma N‑Glycome AnalysisAdamczyk, Barbara / Struwe, Weston B. / Ercan, Altan / Nigrovic, Peter A. / Rudd, Pauline M. et al. | 2013
- 455
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Cancer Cell Resistance to Aurora Kinase Inhibitors: Identification of Novel Targets for Cancer TherapyHrabakova, Rita / Kollareddy, Madhu / Tyleckova, Jirina / Halada, Petr / Hajduch, Marian / Gadher, Suresh Jivan / Kovarova, Hana et al. | 2013
- 470
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1H NMR Study on the Short- and Long-Term Impact of Two Training Programs of Sprint Running on the Metabolic Fingerprint of Human SerumPechlivanis, Alexandros / Kostidis, Sarantos / Saraslanidis, Ploutarchos / Petridou, Anatoli / Tsalis, George / Veselkov, Kirill / Mikros, Emmanuel / Mougios, Vassilis / Theodoridis, Georgios A. et al. | 2013
- 481
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Metabolomics of Cerebrospinal Fluid from Humans Treated for RabiesO’Sullivan, Aifric / Willoughby, Rodney E. / Mishchuk, Darya / Alcarraz, Brisa / Cabezas-Sanchez, Cesar / Condori, Rene Edgar / David, Dan / Encarnacion, Rafael / Fatteh, Naaz / Fernandez, Josefina et al. | 2013
- 491
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Construction of Plastid Reference Proteomes for Maize and Arabidopsis and Evaluation of Their Orthologous Relationships; The Concept of OrthoproteomicsHuang, Mingshu / Friso, Giulia / Nishimura, Kenji / Qu, Xian / Olinares, Paul Dominic B. / Majeran, Wojciech / Sun, Qi / van Wijk, Klaas J. et al. | 2013
- 505
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Identification of Potential Biomarkers for Ovarian Cancer by Urinary Metabolomic ProfilingZhang, Tao / Wu, Xiaoyan / Ke, Chaofu / Yin, Mingzhu / Li, Zhenzi / Fan, Lijun / Zhang, Wang / Zhang, Haiyu / Zhao, Falin / Zhou, Xiaohua et al. | 2013
- 513
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Deciphering the Differential Toxic Responses of Radix aconiti lateralis praeparata in Healthy and Hydrocortisone-Pretreated Rats Based on Serum Metabolic ProfilesTan, Yong / Li, Jian / Liu, Xinru / Ko, Joshua / He, Xiaojuan / Lu, Cheng / Liu, Zhenli / Zhao, Hongyan / Xiao, Cheng / Niu, Xuyan et al. | 2013
- 525
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Systems Insight into the Spore Germination of Streptomyces coelicolorStrakova, Eva / Bobek, Jan / Zikova, Alice / Rehulka, Pavel / Benada, Oldrich / Rehulkova, Helena / Kofronova, Olga / Vohradsky, Jiri et al. | 2013
- 537
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Metabolic Influence of Acute Cyadox Exposure on Kunming MiceHuang, Chongyang / Lei, Hehua / Zhao, Xiuju / Tang, Huiru / Wang, Yulan et al. | 2013
- 546
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Correction to Comparative Proteomics of Human Monkeypox and Vaccinia Intracellular Mature and Extracellular Enveloped VirionsManes, Nathan P. / Estep, Ryan D. / Mottaz, Heather M. / Moore, Ronald J. / Clauss, Therese R. W. / Monroe, Matthew E. / Du, Xiuxia / Adkins, Joshua N. / Wong, Scott W. / Smith, Richard D. et al. | 2013