Accurate Identification of Deamidation and Citrullination from Global Shotgun Proteomics Data Using a Dual-Search Delta Score Strategy (Unknown)
- New search for: Wang, Xi
- New search for: Swensen, Adam C.
- New search for: Zhang, Tong
- New search for: Piehowski, Paul D.
- New search for: Gaffrey, Matthew J.
- New search for: Monroe, Matthew E.
- New search for: Zhu, Ying
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https://orcid.org/0000-0002-5416-0566
- New search for: Dong, Hailiang
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https://orcid.org/0000-0002-7468-1350
- New search for: Qian, Wei-Jun
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https://orcid.org/0000-0002-5393-2827
- New search for: Wang, Xi
- New search for: Swensen, Adam C.
- New search for: Zhang, Tong
- New search for: Piehowski, Paul D.
- New search for: Gaffrey, Matthew J.
- New search for: Monroe, Matthew E.
- New search for: Zhu, Ying
- Further information on Zhu, Ying:
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https://orcid.org/0000-0002-5416-0566
- New search for: Dong, Hailiang
- Further information on Dong, Hailiang:
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https://orcid.org/0000-0002-7468-1350
- New search for: Qian, Wei-Jun
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https://orcid.org/0000-0002-5393-2827
In:
Journal of Proteome Research
;
19
, 4
;
1863-1872
;
2020
- Article (Journal) / Electronic Resource
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Title:Accurate Identification of Deamidation and Citrullination from Global Shotgun Proteomics Data Using a Dual-Search Delta Score Strategy
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Additional title:J. Proteome Res.
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Contributors:Wang, Xi ( author ) / Swensen, Adam C. ( author ) / Zhang, Tong ( author ) / Piehowski, Paul D. ( author ) / Gaffrey, Matthew J. ( author ) / Monroe, Matthew E. ( author ) / Zhu, Ying ( author ) / Dong, Hailiang ( author ) / Qian, Wei-Jun ( author )
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Published in:Journal of Proteome Research ; 19, 4 ; 1863-1872
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Publisher:
- New search for: American Chemical Society
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Publication date:2020-04-03
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ISSN:
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Coden:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:Unknown
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Keywords:
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Source:
Table of contents – Volume 19, Issue 4
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1351
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Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV‑1Zhang, Chengxin / Zheng, Wei / Huang, Xiaoqiang / Bell, Eric W. / Zhou, Xiaogen / Zhang, Yang et al. | 2020
- 1361
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Prepregnant Obesity of Mothers in a Multiethnic Cohort Is Associated with Cord Blood Metabolomic Changes in OffspringSchlueter, Ryan J. / Al-Akwaa, Fadhl M. / Benny, Paula A. / Gurary, Alexandra / Xie, Guoxiang / Jia, Wei / Chun, Shaw J. / Chern, Ingrid / Garmire, Lana X. et al. | 2020
- 1375
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Spatiotemporal Proteomics Reveals the Molecular Consequences of Hormone Treatment in a Mouse Model of Lower Urinary Tract DysfunctionThomas, Samuel / Hao, Ling / DeLaney, Kellen / McLean, Dalton / Steinke, Laura / Marker, Paul C. / Vezina, Chad M. / Li, Lingjun / Ricke, William A. et al. | 2020
- 1383
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Sex- and Age-Related Metabolic Characteristics of Serum Free Fatty Acids in Healthy Chinese AdultsZhao, Linjing / Hao, Fangjia / Huang, Jiashuai / Liu, Xiaohui / Ma, Xiaojing / Wang, Congrong / Bao, Yuqian / Wang, Lixin / Jia, Weiping / Zhao, Aihua et al. | 2020
- 1392
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Peptidomics Approaches for the Identification of Bioactive Molecules from Diaphorina citriFleites, Laura A. / Johnson, Richard / Kruse, Angela R. / Nachman, Ronald J. / Hall, David G. / MacCoss, Michael / Heck, Michelle L. et al. | 2020
- 1409
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Proteome Wide Profiling of N‑ε-Lysine Acetylation Reveals a Novel Mechanism of Regulation of the Chitinase Activity in Francisella novicidaMarakasova, Ekaterina / Ii, Alexandra / Nelson, Kristina T. / van Hoek, Monique L. et al. | 2020
- 1423
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Profiling of Endogenously Intact N‑Linked and O‑Linked Glycopeptides from Human Serum Using an Integrated PlatformWang, Shuyue / Qin, Hongqiang / Mao, Jiawei / Fang, Zheng / Chen, Yao / Zhang, Xiaolei / Hu, Lianghai / Ye, Mingliang et al. | 2020
- 1435
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Comprehensive Spectral Library from the Pathogenic Bacterium Streptococcus pneumoniae with Focus on PhosphoproteinsHentschker, Christian / Maaß, Sandra / Junker, Sabryna / Hecker, Michael / Hammerschmidt, Sven / Otto, Andreas / Becher, Dörte et al. | 2020
- 1447
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Skyline for Small Molecules: A Unifying Software Package for Quantitative MetabolomicsAdams, Kendra J. / Pratt, Brian / Bose, Neelanjan / Dubois, Laura G. / St. John-Williams, Lisa / Perrott, Kevin M. / Ky, Karina / Kapahi, Pankaj / Sharma, Vagisha / MacCoss, Michael J. et al. | 2020
- 1459
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Tryp-N: A Thermostable Protease for the Production of N‑terminal Argininyl and Lysinyl PeptidesWilson, John P. / Ipsaro, Jonathan J. / Del Giudice, Samantha N. / Turna, Nikita Saha / Gauss, Carla M. / Dusenbury, Katharine H. / Marquart, Krisann / Rivera, Keith D. / Pappin, Darryl J. et al. | 2020
- 1470
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Comprehensive Glycomic Profiling of Respiratory Tract Tissues of Tree Shrews by TiO2‑PGC Chip Mass SpectrometryYau, Lee-Fong / Chan, Ka-Man / Yang, Chun-Guang / Ip, Sun-Wai / Kang, Yue / Mai, Zhi-Tong / Tong, Tian-Tian / Jiang, Zhi-Hong / Yang, Zi-Feng / Wang, Jing-Rong et al. | 2020
- 1481
-
Tailor: A Nonparametric and Rapid Score Calibration Method for Database Search-Based Peptide Identification in Shotgun ProteomicsSulimov, Pavel / Kertész-Farkas, Attila et al. | 2020
- 1491
-
Quantitative Proteomic Analysis of the Slime and Ventral Mantle Glands of the Striped Pyjama Squid (Sepioloidea lineolata)Caruana, Nikeisha J. / Strugnell, Jan M. / Finn, Julian / Faou, Pierre / Plummer, Kim M. / Cooke, Ira R. et al. | 2020
- 1502
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Comprehensive Analyses of the Immunoglobulin Proteome for the Classification of Glomerular DiseasesLiu, Jianhua / Li, Yang / Dai, Jiayu / Lin, Baoxu / Xiao, Chunying / Zhang, Xinpeng / Luo, Lin / Wang, Tingting / Li, Xiaoying / Yu, Yao et al. | 2020
- 1513
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Proteomics Analysis of Cellular BRS3 Receptor Activation Reveals Potential Mechanism for Signal Transduction and Cell ProliferationDong, Lijie / Zhang, Baohui / Wu, Lehao / Shang, Zhi / Liu, Sha / Jiang, Xiaoteng / Wang, Huiyu / Fan, Liuyin / Zhang, Yan / Xiao, Hua et al. | 2020
- 1522
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Mapping Interactions among Cell-Free Expressed Zika Virus ProteinsVarasteh Moradi, Shayli / Gagoski, Dejan / Mureev, Sergey / Walden, Patricia / McMahon, Kerrie-Ann / Parton, Robert G. / Johnston, Wayne A. / Alexandrov, Kirill et al. | 2020
- 1533
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Proteomic Analyses Identify a Novel Role for EZH2 in the Initiation of Cancer Cell Drug TolerancePham, Victoria / Pitti, Robert / Tindell, Charles A. / Cheung, Tommy K. / Masselot, Alexandre / Stephan, Jean-Phillipe / Guler, Gulfem D. / Wilson, Catherine / Lill, Jennie / Arnott, David et al. | 2020
- 1548
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Temporal Study of the Perturbation of Crustacean Neuropeptides Due to Severe Hypoxia Using 4‑Plex Reductive DimethylationBuchberger, Amanda R. / Sauer, Christopher S. / Vu, Nhu Q. / DeLaney, Kellen / Li, Lingjun et al. | 2020
- 1556
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Quantitative Proteomics Reveals the Development of HBV-Associated Glomerulonephritis Triggered by the Downregulation of SLC7A7Zuo, Tao / Chen, Peiru / Jing, Sha / Zhang, Tao / Chang, Lei / Xu, Feng / Zhao, Chao / Xu, Ping et al. | 2020
- 1565
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Bait Correlation Improves Interactor Identification by Tandem Mass Tag-Affinity Purification-Mass SpectrometryMei, Liangyong / Montoya, Maureen R. / Quanrud, Guy M. / Tran, Minh / Villa-Sharma, Athena / Huang, Ming / Genereux, Joseph C. et al. | 2020
- 1574
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Middle-Down Proteomics Reveals Dense Sites of Methylation and Phosphorylation in Arginine-Rich RNA-Binding ProteinsKundinger, Sean R. / Bishof, Isaac / Dammer, Eric B. / Duong, Duc M. / Seyfried, Nicholas T. et al. | 2020
- 1592
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Quantitative Proteomic Analysis of the Central Amygdala in Neuropathic Pain Model RatsKaru, Kersti / Swanwick, Richard S. / Novejarque-Gadea, Amparo / Antunes-Martins, Ana / Thomas, Benjamin / Yoshimi, Eiji / Foster, William / Fang, Min / McMahon, Stephen B. / Bennett, David L. H. et al. | 2020
- 1620
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Phosphoproteome Analysis Reveals Dynamic Heat Shock Protein 27 Phosphorylation in Tanshinone IIA-Induced Cell DeathYin, Chieh-Fan / Kao, Shih-Chieh / Hsu, Chia-Lang / Chang, Yi-Wen / Cheung, Chantal Hoi Yin / Huang, Hsuan-Cheng / Juan, Hsueh-Fen et al. | 2020
- 1635
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Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC‑1 Cell LineTan, Zhijing / Zhu, Jianhui / Stemmer, Paul M. / Sun, Liangliang / Yang, Zhichang / Schultz, Kendall / Gaffrey, Matthew J. / Cesnik, Anthony J. / Yi, Xinpei / Hao, Xiaohu et al. | 2020
- 1647
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A Proteogenomic Resource Enabling Integrated Analysis of Listeria Genotype–Proteotype–Phenotype RelationshipsVaradarajan, Adithi R. / Goetze, Sandra / Pavlou, Maria P. / Grosboillot, Virginie / Shen, Yang / Loessner, Martin J. / Ahrens, Christian H. / Wollscheid, Bernd et al. | 2020
- 1663
-
Hat1-Dependent Lysine Acetylation Targets Diverse Cellular FunctionsAgudelo Garcia, Paula A. / Nagarajan, Prabakaran / Parthun, Mark R. et al. | 2020
- 1674
-
COLMAR Lipids Web Server and Ultrahigh-Resolution Methods for Two-Dimensional Nuclear Magnetic Resonance- and Mass Spectrometry-Based LipidomicsWang, Cheng / Timári, István / Zhang, Bo / Li, Da-Wei / Leggett, Abigail / Amer, Amal O. / Bruschweiler-Li, Lei / Kopec, Rachel E. / Brüschweiler, Rafael et al. | 2020
- 1684
-
Identification of ALDH6A1 as a Potential Molecular Signature in Hepatocellular Carcinoma via Quantitative Profiling of the Mitochondrial ProteomeShin, Heon / Cha, Hyun-Jeong / Lee, Min Jung / Na, Keun / Park, Donha / Kim, Chae-Yeon / Han, Dai Hoon / Kim, Hoguen / Paik, Young-Ki et al. | 2020
- 1696
-
Fingerprinting Alzheimer’s Disease by 1H Nuclear Magnetic Resonance Spectroscopy of Cerebrospinal FluidVignoli, Alessia / Paciotti, Silvia / Tenori, Leonardo / Eusebi, Paolo / Biscetti, Leonardo / Chiasserini, Davide / Scheltens, Philip / Turano, Paola / Teunissen, Charlotte / Luchinat, Claudio et al. | 2020
- 1706
-
Oxidative Damage to the TCA Cycle Enzyme MDH1 Dysregulates Bioenergetic Enzymatic Activity in the Aged Murine BrainGuo, Xue / Park, Jung Eun / Gallart-Palau, Xavier / Sze, Siu Kwan et al. | 2020
- 1718
-
Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular ProteomicsTannous, Abla / Boonen, Marielle / Zheng, Haiyan / Zhao, Caifeng / Germain, Colin J. / Moore, Dirk F. / Sleat, David E. / Jadot, Michel / Lobel, Peter et al. | 2020
- 1731
-
Extended Snake Venomics by Top-Down In-Source Decay: Investigating the Newly Discovered Anatolian Meadow Viper Subspecies, Vipera anatolica senlikiHempel, Benjamin-Florian / Damm, Maik / Mrinalini / Göçmen, Bayram / Karış, Mert / Nalbantsoy, Ayse / Kini, R. Manjunatha / Süssmuth, Roderich D. et al. | 2020
- 1750
-
Alterations in the Glycan Profile of Mouse Transferrin: New Insights in Collagen-Induced ArthritisMancera-Arteu, Montserrat / Giménez, Estela / Sancho, Jaime / Sanz-Nebot, Victoria et al. | 2020
- 1760
-
Proteomic Profiling of Stem Cell Tissues during Regeneration of Deer Antler: A Model of Mammalian Organ RegenerationDong, Zhen / Haines, Stephen / Coates, Dawn et al. | 2020
- 1776
-
Phosphoproteomics Reveals Novel Targets and Phosphoprotein Networks in Cell Cycle Mediated by Dsk1 KinaseWu, Mei / Feng, Gang / Zhang, Buyu / Xu, Kaikun / Wang, Zhen / Cheng, Sen / Chang, Cheng / Vyas, Aditi / Tang, Zhaohua / Liu, Xiaoyun et al. | 2020
- 1788
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Global Phosphoproteomic Analysis Reveals Significant Metabolic Reprogramming in the Termination of Liver Regeneration in MiceZhang, Jingzi / Tang, Neng / Zhao, Yinjuan / Zhao, Ruoyu / Fu, Xiao / Zhao, Dandan / Zhao, Yue / Huang, Lan / Li, Chaojun / Qiu, Yudong et al. | 2020
- 1800
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Venom Peptide Repertoire of the European Myrmicine Ant Manica rubida: Identification of Insecticidal ToxinsTouchard, Axel / Aili, Samira R. / Téné, Nathan / Barassé, Valentine / Klopp, Christophe / Dejean, Alain / Kini, R. Manjunatha / Mrinalini / Coquet, Laurent / Jouenne, Thierry et al. | 2020
- 1812
-
Metagenome-Guided Proteomic Quantification of Reductive Dehalogenases in the Dehalococcoides mccartyi-Containing Consortium SDC‑9Kucharzyk, Katarzyna H. / Meisel, Jayda E. / Kara-Murdoch, Fadime / Murdoch, Robert W. / Higgins, Steven A. / Vainberg, Simon / Bartling, Craig M. / Mullins, Larry / Hatzinger, Paul B. / Löffler, Frank E. et al. | 2020
- 1824
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Prolonged Heat Stress of Lactobacillus paracasei GCRL163 Improves Binding to Human Colorectal Adenocarcinoma HT-29 Cells and Modulates the Relative Abundance of Secreted and Cell Surface-Located ProteinsAdu, Kayode T. / Wilson, Richard / Baker, Anthony L. / Bowman, John / Britz, Margaret L. et al. | 2020
- 1847
-
Correlation of Venom Toxinome Composition of Indian Red Scorpion (Mesobuthus tamulus) with Clinical Manifestations of Scorpion Stings: Failure of Commercial Antivenom to Immune-Recognize the Abundance of Low Molecular Mass Toxins of This VenomDas, Bhabana / Patra, Aparup / Mukherjee, Ashis Kumar et al. | 2020
- 1857
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Urine Proteomics: Evaluation of Different Sample Preparation Workflows for Quantitative, Reproducible, and Improved Depth of AnalysisDing, Hua / Fazelinia, Hossein / Spruce, Lynn A. / Weiss, Dana A. / Zderic, Stephen A. / Seeholzer, Steven H. et al. | 2020
- 1863
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Accurate Identification of Deamidation and Citrullination from Global Shotgun Proteomics Data Using a Dual-Search Delta Score StrategyWang, Xi / Swensen, Adam C. / Zhang, Tong / Piehowski, Paul D. / Gaffrey, Matthew J. / Monroe, Matthew E. / Zhu, Ying / Dong, Hailiang / Qian, Wei-Jun et al. | 2020
- 1873
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MAPDP: A Cloud-Based Computational Platform for Immunopeptidomics AnalysesCourcelles, Mathieu / Durette, Chantal / Daouda, Tariq / Laverdure, Jean-Philippe / Vincent, Krystel / Lemieux, Sébastien / Perreault, Claude / Thibault, Pierre et al. | 2020