Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information (English)
- New search for: EL-Manzalawy, Yasser
- New search for: Dobbs, Drena
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- New search for: EL-Manzalawy, Yasser
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- New search for: Honavar, Vasant
In:
2008 IEEE International Conference on Bioinformatics and Biomedicine
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289-292
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2008
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ISBN:
- Conference paper / Electronic Resource
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Title:Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information
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Contributors:
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Published in:
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Publisher:
- New search for: IEEE
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Publication date:2008-11-01
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Size:132923 byte
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ISBN:
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DOI:
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Type of media:Conference paper
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents conference proceedings
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 3
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Functional Proteomic Pattern Identification under Low Dose Ionizing RadiationKim, Young Bun / Gao, Jean / Dong, Ying / Yang, Chin-Rang et al. | 2008
- 11
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bcnQL: A Query Language for Biochemical NetworkYang, Hong / Sunderraman, Rajshekhar / Tian, Hao et al. | 2008
- 17
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A Mixture Language Model for Class-Attribute Mining from Biomedical Literature Digital LibraryZhou, Xiaohua / Hu, Xiaohua / Zhang, Xiaodan / Wu, Daniel D. / He, Tingting / Luo, Aijing et al. | 2008
- 23
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Analysis of Multiplex Gene Expression Maps Obtained by VoxelationAn, Li / Xie, Hongbo / Chin, Mark / Obradovic, Zoran / Smith, Desmond / Megalooikonomou, Vasileios et al. | 2008
- 31
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Energy Profile and Secondary Structure Impact shRNA EfficacyZhou, Hong / Zeng, Xiao et al. | 2008
- 37
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Meta Analysis of Microarray Data Using Gene Regulation PathwaysKazmi, Saira Ali / Kim, Yoo-Ah / Pei, Baikang / Ravi, Nori / Rowe, David W. / Wang, Hsin-Wei / Wong, Alan / Shin, Dong-Guk et al. | 2008
- 43
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Frequency Sorting Method for Spectral Analysis of DNA SequencesBucur, A. / Leeuwen, J. van / Dimitrova, N. / Mittal, C. et al. | 2008
- 51
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Knowledge Discovery in Clinical Performance of Cancer PatientsHayward, John / Alvarez, Sergio / Ruiz, Carolina / Sullivan, Mary / Tseng, Jennifer / Whalen, Giles et al. | 2008
- 59
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Discovering Frequent Patterns of Functional Associations in Protein Interaction Networks for Function PredictionCho, Young-Rae / Zhang, Aidong et al. | 2008
- 66
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Using Gene Ontology to Enhance Effectiveness of Similarity Measures for Microarray DataChen, Zheng / Tang, Jian et al. | 2008
- 72
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Correlations of Length Distributions between Non-coding and Coding Sequences of Arabidopsis thalianaCaldwell, Rachel / Lin, Yan-Xia / Zhang, Ren et al. | 2008
- 78
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Identifying Interface Elements Implied in Protein-Protein Interactions Using Statistical Tests and Frequent Item SetsMartin, Christine / Cornuéjols, Antoine et al. | 2008
- 84
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Mining Fuzzy Association Patterns in Gene Expression Data for Gene Function PredictionMa, Patrick C. H. / Chan, Keith C. C. et al. | 2008
- 90
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Applying Clustering and Phylogeny Analysis to Study Dinoflagellates Based on Sterol CompositionLeblond, Jeffrey D. / Lasiter, Andrew D. / Li, Cen / Logares, Ramiro / Rengefors, Karin / Evens, Terence J. et al. | 2008
- 98
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Protein Sequence Motif Super-Rule-Tree (SRT) Structure Constructed by Hybrid Hierarchical K-Means Clustering AlgorithmChen, Bernard / He, Jieyue / Pellicer, Steven / Pan, Yi et al. | 2008
- 104
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Using Global Sequence Similarity to Enhance Biological Sequence LabelingCaragea, Cornelia / Sinapov, Jivko / Dobbs, Drena / Honavar, Vasant et al. | 2008
- 115
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Robust Composite Interval Mapping for QTL Analysis by Minimum beta-Divergence MethodMollah, Md. Nurul Haque / Eguchi, Shinto et al. | 2008
- 121
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Effectiveness of Applying Codon Usage Bias for Translational Initiation Sites PredictionZeng, Jia / Alhajj, Reda / Demetrick, Douglas et al. | 2008
- 129
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Reverse Engineering of Gene Regulatory Network by Integration of Prior Global Gene Regulatory InformationPei, Baikang / Rowe, David W. / Shin, Dong-Guk et al. | 2008
- 135
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Invariance Kernel of Biological Regulatory NetworksAhmad, Jamil / Roux, Olivier et al. | 2008
- 141
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Synthetic Gene Design with a Large Number of Hidden Stop CodonsPhan, Vinhthuy / Saha, Sudip / Pandey, Ashutosh / Tit-Yee, Wong et al. | 2008
- 147
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Fast Alignments of Metabolic NetworksCheng, Qiong / Berman, Piotr / Harrison, Robert / Zelikovsky, Alexander et al. | 2008
- 155
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Heart of the Matter: Discovering the Consensus of Multiple Clustering ResultsKosorukoff, Alex / Sinha, Saurabh et al. | 2008
- 163
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Probe Design for Compressive Sensing DNA MicroarraysDai, Wei / Milenkovic, Olgica / Sheikh, Mona A. / Baraniuk, Richard G. et al. | 2008
- 170
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Detecting Significantly Expressed Genes from Their Time-Course Expression Profiles and Its ValidationWu, Fang-Xiang et al. | 2008
- 179
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Exploring Core/Periphery Structures in Protein Interaction Networks Provides Structure-Property Relation InsightsGrindinger, Thomas / Luo, Feng / Wan, Xiu-Feng / Scheuermann, Richard H. et al. | 2008
- 187
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Protein-Protein Interaction Prediction and Assessment from Model OrganismsLin, Xiaotong / Liu, Mei / Chen, Xue-wen et al. | 2008
- 193
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Towards Site-Based Protein Functional AnnotationsLei, Seak Fei / Huan, Jun et al. | 2008
- 199
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Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing MotifsBandyopadhyay, Deepak / Huan, Jun / Liu, Jinze / Prins, Jan / Snoeyink, Jack / Wang, Wei / Tropsha, Alexander et al. | 2008
- 207
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Discrimination of Insoluble-Carbohydrate Binding Proteins and Their Binding Sites Using a 3D Motif Detection MethodDoxey, Andrew C. / Cheng, Zhenyu / McConkey, Brendan J. et al. | 2008
- 217
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On the Role of Local Matching for Efficient Semi-supervised Protein Sequence ClassificationKuksa, Pavel / Huang, Pai-Hsi / Pavlovic, Vladimir et al. | 2008
- 223
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Uncovering Genomic Reassortments among Influenza Strains by Enumerating Maximal BicliquesNagarajan, Niranjan / Kingsford, Carl et al. | 2008
- 231
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Exploring Alternative Splicing Features Using Support Vector MachinesXia, Jing / Caragea, Doina / Brown, Susan et al. | 2008
- 239
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New Approaches to Compare Phylogenetic Search HeuristicsSul, Seung-Jin / Matthews, Suzanne / Williams, Tiffani L. et al. | 2008
- 249
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Biological Data Outlier Detection Based on Kullback-Leibler DivergenceOh, Jung Hun / Gao, Jean / Rosenblatt, Kevin et al. | 2008
- 257
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Multi-way Association Extraction from Biological Text Documents Using Hyper-GraphsMukhopadhyay, Snehasis / Palakal, Mathew / Maddu, Kalyan et al. | 2008
- 263
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Figure Classification in Biomedical Literature towards Figure MiningIshii, Natsu / Koike, Asako / Yamamoto, Yasunori / Takagi, Toshihisa et al. | 2008
- 273
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Editing Bayesian Networks: A New Approach for Combining Prior Knowledge and Gene Expression Measurements for Researching DiseasesRubinstein, Udi / Felder, Yifat / Ginzbourg, Nana / Gurevich, Michael / Tuller, Tamir et al. | 2008
- 278
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Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic ProfilesMitrofanova, Antonina / Kleinberg, Samantha / Carlton, Jane / Kasif, Simon / Mishra, Bud et al. | 2008
- 284
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Towards the Mental Health OntologyHadzic, Maja / Chen, Meifania / Dillon, Tharam S. et al. | 2008
- 289
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Predicting Protective Linear B-Cell Epitopes Using Evolutionary InformationEL-Manzalawy, Yasser / Dobbs, Drena / Honavar, Vasant et al. | 2008
- 295
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PhyQL: A Web-Based Phylogenetic Visual Query EngineHossain, Shahriyar / Islam, Munirul / Jesmin, / Jamil, Hasan M. et al. | 2008
- 301
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A Changing Window Approach to Exploring Gene Expression PatternsWang, Qiang / Ye, Yunming / Huang, Joshua Zhexue et al. | 2008
- 305
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Comparing and Clustering Flow Cytometry DataLiu, Lin / Xiong, Li / Lu, James J. / Gernert, Kim M. / Hertzberg, Vicki et al. | 2008
- 310
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Feature Selection for Tandem Mass Spectrum Quality AssessmentDing, Jiarui / Shi, Jinhong / Zou, An-Min / Wu, Fang-Xiang et al. | 2008
- 314
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Integrative Protein Function Transfer Using Factor Graphs and Heterogeneous Data SourcesMitrofanova, Antonina / Pavlovic, Vladimir / Mishra, Bud et al. | 2008
- 321
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A Graph Mining Algorithm for Classifying Chemical CompoundsLam, Winnie W. M. / Chan, Keith C. C. et al. | 2008
- 325
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Protein-Protein Interaction Network Alignment by Quantitative SimulationEvans, Perry / Sandler, Ted / Ungar, Lyle et al. | 2008
- 329
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Synthetic Biology Design and Analysis: A Case Study of Frequency Entrained Biological ClockYu, Peng / Chen, Xi / Pan, David Z. / Ellington, Andrew D. et al. | 2008
- 335
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Multi-agent Model Analysis of the Containment Strategy for Avian Influenza (AI) in South KoreaKim, Taehyong / Hwang, Woochang / Zhang, Aidong / Sen, Surajit / Ramanathan, Murali et al. | 2008
- 339
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Reconstruction of Regulator Activity in E. coli Post-Transcription ProcessesWang, Rui-Sheng / Jin, Guangxu / Zhang, Xiang-Sun / Chen, Luonan et al. | 2008
- 343
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A Functional Network of Yeast Genes Using Gene Ontology InformationZeng, Erliang / Narasimhan, Giri / Schneper, Lisa / Mathee, Kalai et al. | 2008
- 349
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Estimating Regulatory Associations of Genomic Loci and Biological Pathways in Lymphoblastoid CellsWoo, Jung Hoon / Lee, Eunjee / Cho, Sung Bum / Kim, Ju Han et al. | 2008
- 353
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Genome-Wide DNA-Binding Specificity of PIL5, a Arabidopsis Basic Helix-Loop-Helix (bHLH) Transcription FactorKang, Hyojin / Oh, Eunkyoo / Choi, Giltsu / Lee, Doheon et al. | 2008
- 357
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Partial Order-Based Bayesian Network Learning Algorithm for Estimating Gene NetworksNumata, Kazuyuki / Imoto, Seiya / Miyano, Satoru et al. | 2008
- 363
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Multi-objective Particle Swarm Optimization Biclustering of Microarray DataLiu, Junwan / Li, Zhoujun / Liu, Feifei / Chen, Yiming et al. | 2008
- 367
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Functional Annotation from Meta-analysis of Microarray DatasetsSrivastava, Gyan P. / Qiu, Jing / Xu, Dong et al. | 2008
- 372
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Improvement of Survival Prediction from Gene Expression Profiles by Mining of Prior KnowledgeRen, Siyuan / Obradovic, Zoran et al. | 2008
- 376
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Systematic Evaluation of Scaling Methods for Gene Expression DataPandey, Gaurav / Ramakrishnan, Lakshmi Naarayanan / Steinbach, Michael / Kumar, Vipin et al. | 2008
- 382
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Estimating Missing Value in Microarray Data Using Fuzzy Clustering and Gene OntologyMohammadi, Azadeh / Saraee, Mohammad Hossein et al. | 2008
- 386
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Fast Gene Selection for Microarray Data Using SVM-Based Evaluation CriterionZhou, Xin / Wu, X. Y. / Mao, K. Z. / Tuck, David P. et al. | 2008
- 393
-
Boosting Methods for Protein Fold Recognition: An Empirical ComparisonKrishnaraj, Yazhene / Reddy, Chandan K. et al. | 2008
- 397
-
Images Based System for Surface Matching in Macromolecular ScreeningMerelli, Ivan / Cozzi, Paolo / D'Agostino, Daniele / Cleamatis, Andrea / Milanesi, Luciano et al. | 2008
- 402
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Structure Based Functional Analysis of Bacteriophage f1 Gene V ProteinMasso, Majid / Mathe, Ewy / Parvez, Nida / Hijazi, Kahkeshan / Vaisman, Iosif I. et al. | 2008
- 407
-
Identifying Calcium-Binding Sites with Oxygen-Carbon Shell Geometric and Chemic Criteria-A Graph-Based ApproachLiu, Hui / Deng, Hai et al. | 2008
- 411
-
Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function PredictionJiang, Xiaoyu / Nariai, Naoki / Steffen, Martin / Kasif, Simon / Gold, David / Kolaczyk, Eric D. et al. | 2008
- 417
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Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology AnnotationsMaruyama, Osamu / Hirakawa, Hideki / Iwayanagi, Takao / Ishida, Yoshiko / Takeda, Shizu / Otomo, Jun / Kuhara, Satoru et al. | 2008
- 421
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LogCHEM: Interactive Discriminative Mining of Chemical StructureCosta, Vítor Santos / Fonseca, Nuno A. / Camacho, Rui et al. | 2008
- 429
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Sampling Based Meta-algorithms for Accurate Multiple Sequence AlignmentThapar, Vishal / Rajasekaran, Sanguthevar et al. | 2008
- 433
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Conservative, Non-conservative and Average Pairwise Statistical Significance of Local Sequence AlignmentAgrawal, Ankit / Huang, Xiaoqiu et al. | 2008
- 437
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Genome Alignments Using MPI-LAGANZhang, Ruinan / Rangwala, Huzefa / Karypis, George et al. | 2008
- 443
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Data Integration on Multiple Data SetsMi, Tian / Aseltine, Robert / Rajasekaran, Sanguthevar et al. | 2008
- 449
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Multiway Clustering for Creating Biomedical Term SetsKandylas, Vasileios / Ungar, Lyle / Sandler, Ted / Jensen, Shane et al. | 2008
- 453
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Online Biomedical Concept Annotation Using Language Model MappingReeve, Lawrence H. / Han, Hyoil / Brooks, Ari D. et al. | 2008
- 457
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Detecting Duplicate Biological Entities Using Markov Random Field-Based Edit DistanceSong, Min / Rudniy, Alex et al. | 2008
- 461
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Document Classification for Mining Host Pathogen Protein-Protein InteractionsXu, Guixian / Yin, Lanlan / Torii, Manabu / Niu, Zhendong / Wu, Cathy / Hu, Zhangzhi / Liu, Hongfang et al. | 2008
- 467
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iProLINK: A Framework for Linking Text Mining with Ontology and Systems BiologyHu, Zhang-Zhi / Cohen, K. Bretonnel / Hirschman, Lynette / Valencia, Alfonso / Liu, Hongfang / Giglio, Michelle G. / Wu, Cathy H. et al. | 2008
- 473
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Extracting Protein-Protein Interactions from MEDLINE Using Syntactic RolesAhmed, Syed Toufeeq / Davulcu, Hasan / Baral, Chitta et al. | 2008
- 477
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Author index| 2008
- 482
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Publisher's Information| 2008
- C1
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Cover Art| 2008
- i
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Title Page i| 2008
- iii
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Title Page iii| 2008
- iv
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Copyright Page| 2008
- v
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Table of Contents| 2008
- xii
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Preface| 2008
- xiii
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Organization| 2008
- xvi
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Program Committee| 2008
- xx
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Keynotes| 2008