TemPred: A Novel Protein Template Search Engine to Improve Protein Structure Prediction (English)
- New search for: Tripathi, Asmita
- New search for: Mondal, Rajkrishna
- New search for: Lahiri, Tapobrata
- Further information on Lahiri, Tapobrata:
- https://orcid.org/0000-0002-0290-4201
- New search for: Chaurasiya, Deepak
- New search for: Pal, Manoj Kumar
- New search for: Tripathi, Asmita
- New search for: Mondal, Rajkrishna
- New search for: Lahiri, Tapobrata
- Further information on Lahiri, Tapobrata:
- https://orcid.org/0000-0002-0290-4201
- New search for: Chaurasiya, Deepak
- New search for: Pal, Manoj Kumar
In:
IEEE/ACM Transactions on Computational Biology and Bioinformatics
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20
, 3
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2112-2121
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2023
- Article (Journal) / Electronic Resource
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Title:TemPred: A Novel Protein Template Search Engine to Improve Protein Structure Prediction
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Contributors:Tripathi, Asmita ( author ) / Mondal, Rajkrishna ( author ) / Lahiri, Tapobrata ( author ) / Chaurasiya, Deepak ( author ) / Pal, Manoj Kumar ( author )
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Published in:IEEE/ACM Transactions on Computational Biology and Bioinformatics ; 20, 3 ; 2112-2121
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Publisher:
- New search for: IEEE
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Publication date:2023-05-01
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Size:4461462 byte
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 20, Issue 3
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1626
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Algorithms for Computational Biology: Eighth EditionMartin-Vide, Carlos / Vega-Rodriguez, Miguel A. et al. | 2023
- 1628
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Reversal and Indel Distance With Intergenic Region InformationAlexandrino, Alexsandro Oliveira / Brito, Klairton Lima / Oliveira, Andre Rodrigues / Dias, Ulisses / Dias, Zanoni et al. | 2023
- 1641
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Genome Rearrangement Distance With a Flexible Intergenic Regions AspectBrito, Klairton Lima / Alexandrino, Alexsandro Oliveira / Oliveira, Andre Rodrigues / Dias, Ulisses / Dias, Zanoni et al. | 2023
- 1654
-
Defining Phylogenetic Network Distances Using Cherry OperationsLandry, Kaari / Teodocio, Aivee / Lafond, Manuel / Tremblay-Savard, Olivier et al. | 2023
- 1667
-
Sparse Triangular Decomposition for Computing Equilibria of Biological Dynamic Systems Based on Chordal GraphsMou, Chenqi / Ju, Wenwen et al. | 2023
- 1679
-
Best Match Graphs With Binary TreesSchaller, David / Geis, Manuela / Hellmuth, Marc / Stadler, Peter F. et al. | 2023
- 1691
-
Improved DNA-Versus-Protein Homology Search for Protein FossilsYao, Yin / Frith, Martin C. et al. | 2023
- 1700
-
Large-Scale Multiple Sequence Alignment and the Maximum Weight Trace Alignment Merging ProblemZaharias, Paul / Smirnov, Vladimir / Warnow, Tandy et al. | 2023
- 1713
-
PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function PredictionWu, Kaitao / Wang, Lexiang / Liu, Bo / Liu, Yang / Wang, Yadong / Li, Junyi et al. | 2023
- 1725
-
Assessment of Prediction Uncertainty Quantification Methods in Systems BiologyVillaverde, Alejandro F. / Raimundez, Elba / Hasenauer, Jan / Banga, Julio R. et al. | 2023
- 1737
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ISLMI:Predicting lncRNA-miRNA Interactions Based on Information Injection and Second-Order Graph Convolution NetworkSong, Jinmiao / Tian, Shengwei / Yu, Long / Yang, Qimeng / Wang, Yuanxu / Dai, Qiguo / Duan, Xiaodong et al. | 2023
- 1746
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A Hybrid Two-Stage Teaching-Learning-Based Optimization Algorithm for Feature Selection in BioinformaticsKang, Yan / Wang, Haining / Pu, Bin / Tao, Liu / Chen, Jianguo / Yu, Philip S. et al. | 2023
- 1761
-
BRMCF: Binary Relevance and MLSMOTE Based Computational Framework to Predict Drug Functions From Chemical and Biological Properties of DrugsDas, Pranab / Thakran, Yogita / Anal, S. R. Ngamwal / Pal, Vipin / Yadav, Anju et al. | 2023
- 1774
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LDCMFC: Predicting Long Non-Coding RNA and Disease Association Using Collaborative Matrix Factorization Based on CorrentropyXi, Wen-Yu / Zhou, Feng / Gao, Ying-Lian / Liu, Jin-Xing / Zheng, Chun-Hou et al. | 2023
- 1783
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Bidirectional Association Discovery Leads to Precise Identification of Lung Cancer Biomarkers and Genome Taxa ClassBhattacharyya, Ramkishore et al. | 2023
- 1795
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A Parallel Tiled and Sparsified Four-Russians Algorithm for Nussinov's RNA FoldingTchendji, Vianney Kengne / Youmbi, Franklin Ingrid Kamga / Djamegni, Clementin Tayou / Zeutouo, Jerry Lacmou et al. | 2023
- 1807
-
Inferring Gene Regulatory Networks via Ensemble Path Consistency Algorithm Based on Conditional Mutual InformationXu, Jie / Yang, Guanxue / Liu, Guohai / Liu, Hui et al. | 2023
- 1817
-
An Efficient Detection and Classification of Acute Leukemia Using Transfer Learning and Orthogonal Softmax Layer-Based ModelDas, Pradeep Kumar / Sahoo, Biswajeet / Meher, Sukadev et al. | 2023
- 1829
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Interpretable Ensembles of Classifiers for Uncertain Data With Bioinformatics ApplicationsMaia, Marcelo Rodrigues de Holanda / Plastino, Alexandre / Freitas, Alex / de Magalhaes, Joao Pedro et al. | 2023
- 1842
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FGFICA: Independent Component Analysis of Fusion Genomic Features for Mining Epi-Transcriptome Profiling DataChen, Shutao / Zhang, Lin / Chen, Xiangzhi / Liu, Hui et al. | 2023
- 1854
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DGANDDI: Double Generative Adversarial Networks for Drug-Drug Interaction PredictionYu, Hui / Li, KangKang / Shi, JianYu et al. | 2023
- 1864
-
Improving Biomedical ReQA With Consistent NLI-Transfer and Post-WhiteningBai, Jun / Yin, Chuantao / Wu, Zimeng / Zhang, Jianfei / Wang, Yanmeng / Jia, Guanyi / Rong, Wenge / Xiong, Zhang et al. | 2023
- 1876
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Aberrant Static and Dynamic Functional Brain Network in Depression Based on EEG Source LocalizationLin, Xiangbin / Kong, Weizhuang / Li, Jianxiu / Shao, Xuexiao / Jiang, Changting / Yu, Ruilan / Li, Xiaowei / Hu, Bin et al. | 2023
- 1890
-
An Attention-Guided CNN Framework for Segmentation and Grading of Glioma Using 3D MRI ScansTripathi, Prasun Chandra / Bag, Soumen et al. | 2023
- 1905
-
GLassonet: Identifying Discriminative Gene Sets Among Molecular Subtypes of Breast CancerLiu, Shuhui / Zhang, Yupei / Shang, Xuequn et al. | 2023
- 1917
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A Drug Combination Prediction Framework Based on Graph Convolutional Network and Heterogeneous InformationChen, Hegang / Lu, Yuyin / Yang, Yuedong / Rao, Yanghui et al. | 2023
- 1926
-
PreVFs-RG: A Deep Hybrid Model for Identifying Virulence Factors Based on Residual Block and Gated Recurrent UnitZhang, Shengli / Jing, Yuanyuan et al. | 2023
- 1935
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CPGL: Prediction of Compound-Protein Interaction by Integrating Graph Attention Network With Long Short-Term Memory Neural NetworkZhao, Minghua / Yuan, Min / Yang, Yaning / Xu, Steven X et al. | 2023
- 1943
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GIFDTI: Prediction of Drug-Target Interactions Based on Global Molecular and Intermolecular Interaction Representation LearningZhao, Qichang / Duan, Guihua / Zhao, Haochen / Zheng, Kai / Li, Yaohang / Wang, Jianxin et al. | 2023
- 1953
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Improved Computational Drug-Repositioning by Self-Paced Non-Negative Matrix Tri-FactorizationDang, Qi / Liang, Yong / Ouyang, Dong / Miao, Rui / Ling, Caijin / Liu, Xiaoying / Xie, Shengli et al. | 2023
- 1963
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GRA-GCN: Dense Granule Protein Prediction in Apicomplexa Protozoa Through Graph Convolutional NetworkShi, Haoyuan / Feng, Haisong / Lu, Zhenxiao / Xue, Wei / Yang, Congshan / Yue, Zhenyu et al. | 2023
- 1971
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Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of BiosystemsSequeiros, Carlos / Otero-Muras, Irene / Vazquez, Carlos / Banga, Julio R. et al. | 2023
- 1983
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Clustering Single-Cell RNA Sequence Data Using Information Maximized and Noise-Invariant RepresentationsMondal, Arnab Kumar / Joshi, Indu / Singh, Pravendra / AP, Prathosh et al. | 2023
- 1995
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Improved Node and Arc Multiplicity Estimation in De Bruijn Graphs Using Approximate Inference in Conditional Random FieldsSteyaert, Aranka / Audenaert, Pieter / Fostier, Jan et al. | 2023
- 2007
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scBKAP: A Clustering Model for Single-Cell RNA-Seq Data Based on Bisecting K-MeansWang, Xiaolin / Gao, Hongli / Qi, Ren / Zheng, Ruiqing / Gao, Xin / Yu, Bin et al. | 2023
- 2016
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VMF-SSD: A Novel V-Space Based Multi-Scale Feature Fusion SSD for Apple Leaf Disease DetectionTian, Liangliang / Zhang, Haixi / Liu, Bin / Zhang, Jiaqi / Duan, Nannan / Yuan, Aihong / Huo, Yingqiu et al. | 2023
- 2029
-
SPPPred: Sequence-Based Protein-Peptide Binding Residue Prediction Using Genetic Programming and Ensemble LearningShafiee, Shima / Fathi, Abdolhossein / Taherzadeh, Ghazaleh et al. | 2023
- 2041
-
ParRADMeth: Identification of Differentially Methylated Regions on Multicore ClustersFernandez-Fraga, Alejandro / Gonzalez-Dominguez, Jorge / Tourino, Juan et al. | 2023
- 2050
-
Multi-View Clustering for Integration of Gene Expression and Methylation Data With Tensor Decomposition and Self-Representation LearningGao, Xiaowei / Wang, Yan / Hou, Weimin / Liu, Zaiyi / Ma, Xiaoke et al. | 2023
- 2064
-
Parallel Exchange of Randomized SubGraphs for Optimization of Network Alignment: PERSONATuncay, Erhun Giray / Erdur, Rza Cenk / Conrad, Tim et al. | 2023
- 2078
-
DeepCGP: A Deep Learning Method to Compress Genome-Wide Polymorphisms for Predicting Phenotype of RiceIslam, Tanzila / Kim, Chyon Hae / Iwata, Hiroyoshi / Hiroyuki, Shimono / Kimura, Akio et al. | 2023
- 2089
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DGCddG: Deep Graph Convolution for Predicting Protein-Protein Binding Affinity Changes Upon MutationsJiang, Yelu / Quan, Lijun / Li, Kailong / Li, Yan / Zhou, Yiting / Wu, Tingfang / Lyu, Qiang et al. | 2023
- 2101
-
Knowledge Adaptive Multi-Way Matching Network for Biomedical Named Entity Recognition via Machine Reading ComprehensionChen, Peng / Wang, Jian / Lin, Hongfei / Zhang, Yijia / Yang, Zhihao et al. | 2023
- 2112
-
TemPred: A Novel Protein Template Search Engine to Improve Protein Structure PredictionTripathi, Asmita / Mondal, Rajkrishna / Lahiri, Tapobrata / Chaurasiya, Deepak / Pal, Manoj Kumar et al. | 2023
- 2122
-
Identification of Essential Protein Using Chemical Reaction Optimization and Machine Learning TechniqueInzamam-Ul-Hossain, Md. / Islam, Md. Rafiqul et al. | 2023
- 2136
-
Biomarker Identification via a Factorization Machine-Based Neural Network With Binary Pairwise EncodingDing, Yulian / Lei, Xiujuan / Liao, Bo / Wu, Fang-Xiang et al. | 2023
- 2147
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Modelling, Characterization of Data-Dependent and Process-Dependent Errors in DNA Data StorageWang, Yixin / Noor-A-Rahim, Md. / Gunawan, Erry / Guan, Yong L. / Poh, Chueh L. et al. | 2023
- 2159
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NetPro: Neighborhood Interaction-Based Drug Repositioning via Label PropagationHuang, Yiran / Bin, Yongjin / Zeng, Pingfan / Lan, Wei / Zhong, Cheng et al. | 2023
- 2170
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Gene Expression Classification for Biomarker Identification in Maize Subjected to Various Biotic StressesNazari, Leyla / Zinati, Zahra et al. | 2023
- 2177
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BERT2OME: Prediction of 2′-O-Methylation Modifications From RNA Sequence by Transformer Architecture Based on BERTSoylu, Necla Nisa / Sefer, Emre et al. | 2023
- 2190
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Protein-Protein Interaction Sites Prediction Using Batch Normalization Based CNNs and Oversampling Method Borderline-SMOTEJiang, Changkun / Lv, Weipeng / Li, Jianqiang et al. | 2023
- 2200
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A Deep Neural Network-Based Co-Coding Method to Predict Drug-Protein Interactions by Analyzing the Feature Consistency Between Drugs and ProteinsSun, Chang / Tang, Rong / Huang, Jipeng / Wei, Jin-mao / Liu, Jian et al. | 2023
- 2210
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A Bin-Based Indexing for Scalable Range Join on Genomic DataSinha, Aman / Lai, Bo-Cheng / Mai, Jhih-Yong et al. | 2023
- 2223
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GraphPLBR: Protein-Ligand Binding Residue Prediction With Deep Graph Convolution NetworkWang, Wei / Sun, Bin / Yu, MengXue / Wu, ShiYu / Liu, Dong / Zhang, HongJun / Zhou, Yun et al. | 2023
- 2233
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ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive LearningDu, Linlin / Han, Rui / Liu, Bo / Wang, Yadong / Li, Junyi et al. | 2023
- 2242
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Lite-SeqCNN: A Light-Weight Deep CNN Architecture for Protein Function PredictionKumar, Vikash / Deepak, Akshay / Ranjan, Ashish / Prakash, Aravind et al. | 2023
- 2254
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Deep Multi-Constraint Soft Clustering Analysis for Single-Cell RNA-Seq Data via Zero-Inflated Autoencoder EmbeddingHe, Yezi / Chen, Xiangtao / Tu, Nguyen Hoang / Luo, Jiawei et al. | 2023
- 2266
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scENT for Revealing Gene Clusters From Single-Cell RNA-Seq DataRao, Fan / Chen, Minghan / Yang, Defu / Morrell, Bess / Song, Qianqian / Zhu, Wentao et al. | 2023
- 2278
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Multi-View Kernel Learning for Identification of Disease GenesShah, Ekta / Maji, Pradipta et al. | 2023
- 2291
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A Comprehensive Survey of Deep Learning Techniques in Protein Function PredictionDhanuka, Richa / Singh, Jyoti Prakash / Tripathi, Anushree et al. | 2023
- 2302
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A Stochastic Grammar Approach to Mass Classification in MammogramsPedro, Ricardo Wandre Dias / Ferreira, Ana Luiza Silveira / Pessoa, Rodolph Vinicius Siqueira / Bitencourt, Almir Galvao Vieira / Machado-Lima, Ariane / Nunes, Fatima L. S. et al. | 2023
- 2314
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Triplet-Net Classification of Contiguous Stem Cell Microscopy ImagesWitmer, Adam / Theagarajan, Rajkumar / Bhanu, Bir et al. | 2023
- 2328
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Pareto Dominance Archive and Coordinated Selection Strategy-Based Many-Objective Optimizer for Protein Structure PredictionZhang, Zhiming / Gao, Shangce / Lei, Zhenyu / Xiong, Runqun / Cheng, Jiujun et al. | 2023
- 2341
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RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core PlatformsZhang, Hao / Song, Honglei / Xu, Xiaoming / Chang, Qixin / Wang, Mingkai / Wei, Yanjie / Yin, Zekun / Schmidt, Bertil / Liu, Weiguo et al. | 2023
- 2349
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Ranking Top-$k$ Trees in Tree-Based Phylogenetic NetworksHayamizu, Momoko / Makino, Kazuhisa et al. | 2023
- 2356
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Brute Force Virtual Drug Screening with Molecular Dynamics Simulation and MM/PBSA to Find Potent Inhibitors of METTL16Mitra, Anushka / Manna, Shibambika / Kundu, Raima / Hazra, Ditipriya / Roychowdhury, Amlan et al. | 2023
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