Identification of Functional Microbial Modules Through Network-Based Analysis of Meta-Microbial Features Using Matrix Factorization (English)
- New search for: Ko, Young-Joon
- Further information on Ko, Young-Joon:
- https://orcid.org/0000-0002-2386-6355
- New search for: Kim, Sangsoo
- New search for: Pan, Cheol-Ho
- New search for: Park, Keunwan
- Further information on Park, Keunwan:
- https://orcid.org/0000-0002-8783-9495
- New search for: Ko, Young-Joon
- Further information on Ko, Young-Joon:
- https://orcid.org/0000-0002-2386-6355
- New search for: Kim, Sangsoo
- New search for: Pan, Cheol-Ho
- New search for: Park, Keunwan
- Further information on Park, Keunwan:
- https://orcid.org/0000-0002-8783-9495
In:
IEEE/ACM Transactions on Computational Biology and Bioinformatics
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19
, 5
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2851-2862
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2022
- Article (Journal) / Electronic Resource
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Title:Identification of Functional Microbial Modules Through Network-Based Analysis of Meta-Microbial Features Using Matrix Factorization
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Contributors:Ko, Young-Joon ( author ) / Kim, Sangsoo ( author ) / Pan, Cheol-Ho ( author ) / Park, Keunwan ( author )
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Published in:IEEE/ACM Transactions on Computational Biology and Bioinformatics ; 19, 5 ; 2851-2862
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Publisher:
- New search for: IEEE
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Publication date:2022-09-01
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Size:4107003 byte
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 19, Issue 5
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 2545
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Guest Editorial for Selected Papers From BIOKDD 2020Yan, Da / Qin, Hong / Wu, Hsiang-Yun / Chen, Jake Y. et al. | 2022
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A Gene Selection Method Based on Outliers for Breast Cancer Subtype ClassificationMendonca-Neto, Rayol / Li, Zhi / Fenyo, David / Silva, Claudio T. / Nakamura, Fabiola G. / Nakamura, Eduardo F. et al. | 2022
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Learning Prognostic Models Using Disease Progression Patterns: Predicting the Need for Non-Invasive Ventilation in Amyotrophic Lateral SclerosisMartins, Andreia S. / Gromicho, Marta / Pinto, Susana / de Carvalho, Mamede / Madeira, Sara C. et al. | 2022
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- 2596
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MGATRx: Discovering Drug Repositioning Candidates Using Multi-View Graph AttentionYella, Jaswanth K. / Jegga, Anil G. et al. | 2022
- 2605
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SODA: Detecting COVID-19 in Chest X-Rays With Semi-Supervised Open Set Domain AdaptationZhou, Jieli / Jing, Baoyu / Wang, Zeya / Xin, Hongyi / Tong, Hanghang et al. | 2022
- 2613
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A Computational Monte Carlo Simulation Strategy to Determine the Temporal Ordering of Abnormal Age Onset Among Biomarkers of Alzheimer's DiseaseGuo, Xiaojuan / Chen, Kewei / Chen, Yinghua / Xiong, Chengjie / Su, Yi / Yao, Li / Reiman, Eric M. et al. | 2022
- 2623
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A Multimodal Framework for Improving in Silico Drug Repositioning With the Prior Knowledge From Knowledge GraphsXiong, Zhankun / Huang, Feng / Wang, Ziyan / Liu, Shichao / Zhang, Wen et al. | 2022
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A Novel Method for Identification of Glutarylation Sites Combining Borderline-SMOTE With Tomek Links Technique in Imbalanced DataNing, Qiao / Zhao, Xiaowei / Ma, Zhiqiang et al. | 2022
- 2642
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A Polynomial-Time Algorithm for Minimizing the Deep Coalescence Cost for Level-1 Species NetworksLeMay, Matthew / Libeskind-Hadas, Ran / Wu, Yi-Chieh et al. | 2022
- 2654
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An FPGA Based Energy-Efficient Read Mapper With Parallel Filtering and In-Situ VerificationGudur, Venkateshwarlu Yellaswamy / Maheshwari, Sidharth / Acharyya, Amit / Shafik, Rishad et al. | 2022
- 2712
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ASFold-DNN: Protein Fold Recognition Based on Evolutionary Features With Variable Parameters Using Full Connected Neural NetworkQin, Xinyi / Zhang, Lu / Liu, Min / Xu, Ziwei / Liu, Guangzhong et al. | 2022
- 2723
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Automated Diagnosis of COVID-19 Using Deep Supervised Autoencoder With Multi-View Features From CT ImagesCheng, Jianhong / Zhao, Wei / Liu, Jin / Xie, Xingzhi / Wu, Shangjie / Liu, Liangliang / Yue, Hailin / Li, Junjian / Wang, Jianxin / Liu, Jun et al. | 2022
- 2737
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Clustering of Cancer Attributed Networks by Dynamically and Jointly Factorizing Multi-Layer GraphsHuang, Zhihao / Wang, Yan / Ma, Xiaoke et al. | 2022
- 2749
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DeepCPPred: A Deep Learning Framework for the Discrimination of Cell-Penetrating Peptides and Their Uptake EfficienciesArif, Muhammad / Kabir, Muhammad / Ahmed, Saeed / Khan, Abid / Ge, Fang / Khelifi, Adel / Yu, Dong-Jun et al. | 2022
- 2760
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DeepFusionDTA: Drug-Target Binding Affinity Prediction With Information Fusion and Hybrid Deep-Learning Ensemble ModelPu, Yuqian / Li, Jiawei / Tang, Jijun / Guo, Fei et al. | 2022
- 2770
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DeePROG: Deep Attention-Based Model for Diseased Gene Prognosis by Fusing Multi-Omics DataDutta, Pratik / Patra, Aditya Prakash / Saha, Sriparna et al. | 2022
- 2782
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Document-Level Chemical-Induced Disease Relation Extraction via Hierarchical Representation LearningZhao, Weizhong / Zhang, Jinyong / Yang, Jincai / Jiang, Xingpeng / He, Tingting et al. | 2022
- 2794
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Dynamic Bayesian Network Learning to Infer Sparse Models From Time Series Gene Expression DataAjmal, Hamda B. / Madden, Michael G. et al. | 2022
- 2806
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Effective Identification of Bacterial Genomes From Short and Long Read Sequencing DataLiu, Jian / Sun, Jialiang / Liu, Yongzhuang et al. | 2022
- 2817
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Enriched Random Forest for High Dimensional Genomic DataGhosh, Debopriya / Cabrera, Javier et al. | 2022
- 2829
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Gene Differential Co-Expression Networks Based on RNA-Seq: Construction and Its ApplicationsWang, Pei / Wang, Daojie et al. | 2022
- 2842
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Identification of Enriched Regions in ChIP-Seq Data via a Linear-Time Multi-Level Thresholding AlgorithmNaik, Musab / Rueda, Luis / Vasighizaker, Akram et al. | 2022
- 2851
-
Identification of Functional Microbial Modules Through Network-Based Analysis of Meta-Microbial Features Using Matrix FactorizationKo, Young-Joon / Kim, Sangsoo / Pan, Cheol-Ho / Park, Keunwan et al. | 2022
- 2863
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Identifying Cancer Patient Subgroups by Finding Co-Modules From the Driver Mutation Profiles and Downstream Gene Expression ProfilesSong, Junrong / Peng, Wei / Wang, Feng et al. | 2022
- 2873
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Identifying LncRNA-Encoded Short Peptides Using Optimized Hybrid Features and Ensemble LearningZhao, Siyuan / Meng, Jun / Kang, Qiang / Luan, Yushi et al. | 2022
- 2882
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Identifying Protein Complexes From Protein-Protein Interaction Networks Based on Fuzzy Clustering and GO Semantic InformationPan, Xiangyu / Hu, Lun / Hu, Pengwei / You, Zhu-Hong et al. | 2022
- 2894
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Inferring Gene Co-Expression Networks by Incorporating Prior Protein-Protein Interaction NetworksWang, Meng-Guo / Ou-Yang, Le / Yan, Hong / Zhang, Xiao-Fei et al. | 2022
- 2907
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MCA-Net: Multi-Feature Coding and Attention Convolutional Neural Network for Predicting lncRNA-Disease AssociationZhang, Yuan / Ye, Fei / Gao, Xieping et al. | 2022
- 2920
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Minimum Functional Length Analysis of K-Mer Based on BPNNLiu, Jianli / Zhou, Deliang et al. | 2022
- 2926
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MSCNE:Predict miRNA-Disease Associations Using Neural Network Based on Multi-Source Biological InformationHan, Genwei / Kuang, Zhufang / Deng, Lei et al. | 2022
- 2938
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New Distance-Based approach for Genome-Wide Association StudiesIrigoien, Itziar / Cormand, Bru / Soler-Artigas, Maria / Sanchez-Mora, Cristina / Ramos-Quiroga, Josep-Antoni / Arenas, Concepcion et al. | 2022
- 2950
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PhenoGeneRanker: Gene and Phenotype Prioritization Using Multiplex Heterogeneous NetworksDursun, Cagatay / Kwitek, Anne E. / Bozdag, Serdar et al. | 2022
- 2963
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Prediction of Drug-Related Diseases Through Integrating Pairwise Attributes and Neighbor Topological StructuresSong, Yingying / Cui, Hui / Zhang, Tiangang / Yang, Tingxiao / Li, Xiaokun / Xuan, Ping et al. | 2022
- 2975
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Predictive Modeling of Hospital Readmission: Challenges and SolutionsWang, Shuwen / Zhu, Xingquan et al. | 2022
- 2996
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scRAE: Deterministic Regularized Autoencoders With Flexible Priors for Clustering Single-Cell Gene Expression DataMondal, Arnab Kumar / Asnani, Himanshu / Singla, Parag / AP, Prathosh et al. | 2022
- 3008
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Structure Based in Silico Screening Revealed a Potent Acinetobacter Baumannii Ftsz Inhibitor From Asinex Antibacterial LibraryNavid, Afifa / Ahmad, Sajjad / Sajjad, Rida / Raza, Saad / Azam, Syed Sikander et al. | 2022
- 3019
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- 3032
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TFIDF-Random Forest: Prediction of Aptamer-Protein Interacting PairsUwiragiye, Eugene / Rhinehardt, Kristen L. et al. | 2022
- 3038
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The Detection of Self-Similar/Branching Processes in Complex Biological Systems: Analysis of the Temporal Evolution of Impedance Measurements in Tulsi (Holy Basil) Leaves “Ocimumtenuiflorum”Nigmatullin, Raoul / Sarkar, Samyadip / Biswas, Karabi et al. | 2022
- 3048
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Tissue Specificity Based Isoform Function PredictionYu, Guoxian / Huang, Qiuyue / Zhang, Xiangliang / Guo, Maozu / Wang, Jun et al. | 2022
- 3060
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Using Artificial Neural Networks to Model Errors in Biochemical Manipulation of DNA MoleculesGuo, Alan J. X. / Qi, Hao et al. | 2022