WMMDCA: Prediction of Drug Responses by Weight-Based Modular Mapping in Cancer Cell Lines (English)
- New search for: Wang, Shiming
- Further information on Wang, Shiming:
- https://orcid.org/0000-0003-3222-3914
- New search for: Li, Jie
- Further information on Li, Jie:
- https://orcid.org/0000-0001-9359-3586
- New search for: Wang, Yadong
- New search for: Wang, Shiming
- Further information on Wang, Shiming:
- https://orcid.org/0000-0003-3222-3914
- New search for: Li, Jie
- Further information on Li, Jie:
- https://orcid.org/0000-0001-9359-3586
- New search for: Wang, Yadong
In:
IEEE/ACM Transactions on Computational Biology and Bioinformatics
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18
, 6
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2733-2740
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2021
- Article (Journal) / Electronic Resource
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Title:WMMDCA: Prediction of Drug Responses by Weight-Based Modular Mapping in Cancer Cell Lines
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Contributors:
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Published in:IEEE/ACM Transactions on Computational Biology and Bioinformatics ; 18, 6 ; 2733-2740
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Publisher:
- New search for: IEEE
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Publication date:2021-11-01
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Size:3133474 byte
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 18, Issue 6
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 2057
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EIC Farewell and New EIC IntroductionZhang, Aidong et al. | 2021
- 2058
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Editorial: From the New Editor-in-ChiefAluru, Srinivas et al. | 2021
- 2059
-
Algorithms for Computational Biology: Seventh EditionMartin-Vide, Carlos / Vega-Rodriguez, Miguel A. et al. | 2021
- 2061
-
Fast Optimal Circular Clustering and Applications on Round GenomesDebnath, Tathagata / Song, Mingzhou et al. | 2021
- 2072
-
Stratified Test Accurately Identifies Differentially Expressed Genes Under Batch Effects in Single-Cell DataLiang, Shaoheng / Liang, Qingnan / Chen, Rui / Chen, Ken et al. | 2021
- 2080
-
Sorting Permutations by Intergenic OperationsOliveira, Andre Rodrigues / Jean, Geraldine / Fertin, Guillaume / Brito, Klairton Lima / Dias, Ulisses / Dias, Zanoni et al. | 2021
- 2094
-
Heuristics for Genome Rearrangement Distance With Replicated GenesSiqueira, Gabriel / Brito, Klairton Lima / Dias, Ulisses / Dias, Zanoni et al. | 2021
- 2109
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Computational Modeling of Gene-Specific Transcriptional Repression, Activation and Chromatin Interactions in Leukemogenesis by LASSO-Regularized Logistic RegressionSteinauer, Nickolas / Zhang, Kevin / Guo, Chun / Zhang, Jinsong et al. | 2021
- 2123
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Guest Editorial for the 17th Asia Pacific Bioinformatics ConferenceZhang, Louxin / Peng, Shaoliang / Chen, Yi-Ping Phoebe / Sankoff, David / Li, Guoliang / Zhang, Hong-Yu et al. | 2021
- 2125
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The Unconstrained Diameters of the Duplication-Loss Cost and the Loss CostGorecki, Pawel / Eulenstein, Oliver / Tiuryn, Jerzy et al. | 2021
- 2136
-
Reconciliation Reconsidered: In Search of a Most Representative Reconciliation in the Duplication-Transfer-Loss ModelGrueter, Melissa / Duran, Kalani / Ramalingam, Ramya / Libeskind-Hadas, Ran et al. | 2021
- 2144
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Multiple Optimal Reconciliations Under the Duplication-Loss-Coalescence ModelDu, Haoxing / Ong, Yi Sheng / Knittel, Marina / Mawhorter, Ross / Liu, Nuo / Gross, Gianluca / Tojo, Reiko / Libeskind-Hadas, Ran / Wu, Yi-Chieh et al. | 2021
- 2157
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deGSM: Memory Scalable Construction Of Large Scale de Bruijn GraphGuo, Hongzhe / Fu, Yilei / Gao, Yan / Li, Junyi / Wang, Yadong / Liu, Bo et al. | 2021
- 2167
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Towards Optimal Decomposition of Boolean NetworksSu, Cui / Pang, Jun / Paul, Soumya et al. | 2021
- 2177
-
Sorting Signed Permutations by Inverse Tandem Duplication Random LossesHartmann, Tom / Bannach, Max / Middendorf, Martin et al. | 2021
- 2189
-
Prediction of FMN Binding Sites in Electron Transport Chains Based on 2-D CNN and PSSM ProfilesLe, Nguyen-Quoc-Khanh / Nguyen, Binh P. et al. | 2021
- 2198
-
A Convolutional Deep Clustering Framework for Gene Expression Time SeriesOzgul, Ozan Frat / Bardak, Batuhan / Tan, Mehmet et al. | 2021
- 2208
-
A Deep Learning Framework for Gene Ontology Annotations With Sequence- and Network-Based InformationZhang, Fuhao / Song, Hong / Zeng, Min / Wu, Fang-Xiang / Li, Yaohang / Pan, Yi / Li, Min et al. | 2021
- 2218
-
A Memristive Circuit Implementation of Eyes State Detection in Fatigue Driving Based on Biological Long Short-Term Memory RuleWang, Zilu / Hong, Qinghui / Wang, Xiaoping et al. | 2021
- 2230
-
A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti-Longevity Genesda Silva, Pablo Nascimento / Plastino, Alexandre / Fabris, Fabio / Freitas, Alex A. et al. | 2021
- 2239
-
Active Module Identification From Multilayer Weighted Gene Co-Expression Networks: A Continuous Optimization ApproachLi, Dong / Pan, Zhisong / Hu, Guyu / Anderson, Graham / He, Shan et al. | 2021
- 2249
-
An Effective Biclustering-Based Framework for Identifying Cell Subpopulations From scRNA-seq DataFang, Qiong / Su, Dewei / Ng, Wilfred / Feng, Jianlin et al. | 2021
- 2261
-
Categorical Matrix Completion With Active Learning for High-Throughput ScreeningChen, Junyi / Hou, Junhui / Wong, Ka-Chun et al. | 2021
- 2271
-
Characterizing Intra-Tumor Heterogeneity From Somatic Mutations Without Copy-Neutral AssumptionOgundijo, Oyetunji E. / Zhu, Kaiyi / Wang, Xiaodong / Anastassiou, Dimitris et al. | 2021
- 2281
-
Classification of Mild Cognitive Impairment With Multimodal Data Using Both Labeled and Unlabeled SamplesYuan, Shaoxun / Li, Haitao / Wu, Jiansheng / Sun, Xiao et al. | 2021
- 2291
-
Comparing Phylogenetic Approaches to Reconstructing Cell Lineage From Microsatellites With Missing DataLyne, Anne-Marie / Perie, Leila et al. | 2021
- 2302
-
Computational Approach to the Systematic Prediction of Glycolytic Abilities: Looking Into Human MicrobiotaBlanco, Guillermo / Sanchez, Borja / Ruiz, Lorena / Fdez-Riverola, Florentino / Margolles, Abelardo / Lourenco, Analia et al. | 2021
- 2314
-
Computing the Inversion-Indel DistanceWilling, Eyla / Stoye, Jens / Braga, Marilia D. V. et al. | 2021
- 2327
-
Convolutional Neural Network With Graphical Lasso to Extract Sparse Topological Features for Brain Disease ClassificationJi, Junzhong / Yao, Yao et al. | 2021
- 2339
-
Discovering Essential Multiple Gene Effects Through Large Scale Optimization: An Application to Human Cancer MetabolismOcchipinti, Annalisa / Hamadi, Youssef / Kugler, Hillel / Wintersteiger, Christoph M. / Yordanov, Boyan / Angione, Claudio et al. | 2021
- 2353
-
DMFLDA: A Deep Learning Framework for Predicting lncRNA–Disease AssociationsZeng, Min / Lu, Chengqian / Fei, Zhihui / Wu, Fang-Xiang / Li, Yaohang / Wang, Jianxin / Li, Min et al. | 2021
- 2364
-
Drug-Target Interaction Prediction: End-to-End Deep Learning ApproachMonteiro, Nelson R. C. / Ribeiro, Bernardete / Arrais, Joel P. et al. | 2021
- 2375
-
Dual Hyper-Graph Regularized Supervised NMF for Selecting Differentially Expressed Genes and Tumor ClassificationWang, Chuan-Yuan / Yu, Na / Wu, Ming-Juan / Gao, Ying-Lian / Liu, Jin-Xing / Wang, Juan et al. | 2021
- 2384
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EBST: An Evolutionary Multi-Objective Optimization Based Tool for Discovering Potential Biomarkers in Ovarian CancerYaghoobi, Hanif / Babaei, Esmaeil / Hussen, Bashdar Mahmud / Emami, Ali et al. | 2021
- 2394
-
Efficient Compression and Indexing for Highly Repetitive DNA Sequence CollectionsHuo, Hongwei / Chen, Xiaoyang / Guo, Xu / Vitter, Jeffrey Scott et al. | 2021
- 2409
-
Enhanced Protein Structural Class Prediction Using Effective Feature Modeling and Ensemble of ClassifiersBankapur, Sanjay / Patil, Nagamma et al. | 2021
- 2420
-
Estimating Functional Connectivity by Integration of Inherent Brain Function Activity Pattern PriorsZhu, Zhiyuan / Zhen, Zonglei / Wu, Xia / Li, Shuo et al. | 2021
- 2431
-
Evolving Multiobjective Cancer Subtype Diagnosis From Cancer Gene Expression DataWang, Yunhe / Ma, Zhiqiang / Wong, Ka-Chun / Li, Xiangtao et al. | 2021
- 2445
-
Evolving Transcriptomic Profiles From Single-Cell RNA-Seq Data Using Nature-Inspired Multiobjective OptimizationLi, Xiangtao / Zhang, Shixiong / Wong, Ka-Chun et al. | 2021
- 2459
-
Finding Possible Promoter Binding Sites in DNA Sequences by Sequential Patterns Mining With Specific Numbers of GapsKe, Yu-Hao / Huang, Jen-Wei / Lin, Wei-Chen / Jaysawal, Bijay Prasad et al. | 2021
- 2471
-
Floating Search Methodology for Combining Classification Models for Site Recognition in DNA SequencesPerez-Rodriguez, Javier / de Haro-Garcia, Aida / Garcia-Pedrajas, Nicolas et al. | 2021
- 2483
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FUNMarker: Fusion Network-Based Method to Identify Prognostic and Heterogeneous Breast Cancer BiomarkersLi, Xingyi / Xiang, Ju / Wang, Jianxin / Li, Jinyan / Wu, Fang-Xiang / Li, Min et al. | 2021
- 2492
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Genome-Scale Identification, in Silico Characterization and Interaction Study Between Wheat SNARE and NPSN Gene Families Involved in Vesicular TransportGaggar, Payal / Kumar, Manish / Mukhopadhyay, Kunal et al. | 2021
- 2502
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Identifying Microbe-Disease Association Based on a Novel Back-Propagation Neural Network ModelLi, Hao / Wang, Yuqi / Zhang, Zhen / Tan, Yihong / Chen, Zhiping / Wang, Xiangyi / Pei, Tingrui / Wang, Lei et al. | 2021
- 2514
-
Identifying Molecular Biomarkers for Diseases With Machine Learning Based on Integrative OmicsShi, Kai / Lin, Wei / Zhao, Xing-Ming et al. | 2021
- 2526
-
Improved Predicting of The Sequence Specificities of RNA Binding Proteins by Deep LearningTayara, Hilal / Chong, Kil To et al. | 2021
- 2535
-
Incorporating Clinical, Chemical and Biological Information for Predicting Small Molecule-microRNA Associations Based on Non-Negative Matrix FactorizationLuo, Jiawei / Shen, Cong / Lai, Zihan / Cai, Jie / Ding, Pingjian et al. | 2021
- 2546
-
Learning Representation of Molecules in Association Network for Predicting Intermolecular AssociationsYi, Hai-Cheng / You, Zhu-Hong / Guo, Zhen-Hao / Huang, De-Shuang / Chan, Keith C. C. et al. | 2021
- 2555
-
Lesion Segmentation in Ultrasound Using Semi-Pixel-Wise Cycle Generative Adversarial NetsXing, Jie / Li, Zheren / Wang, Biyuan / Qi, Yuji / Yu, Bingbin / Zanjani, Farhad Ghazvinian / Zheng, Aiwen / Duits, Remco / Tan, Tao et al. | 2021
- 2566
-
Manipulating Extracellular Matrix Organizations and Parameters to Control Local Cancer InvasionPal, Antara / Haliti, Pegi / Dharmadhikari, Bhushan / Qi, Wu / Patra, Prabir et al. | 2021
- 2577
-
MHRWR: Prediction of lncRNA-Disease Associations Based on Multiple Heterogeneous NetworksZhao, Xiaowei / Yang, Yiqin / Yin, Minghao et al. | 2021
- 2586
-
Multi-Label Classification Scheme Based on Local Regression for Retinal Vessel SegmentationZou, Beiji / Dai, Yulan / He, Qi / Zhu, Chengzhang / Liu, Geng / Su, Yu / Tang, Rui et al. | 2021
- 2598
-
Multi-Neighborhood Learning for Global Alignment in Biological NetworksMa, Lijia / Wang, Shiqiang / Lin, Qiuzhen / Li, Jianqiang / You, Zhuhong / Huang, Jiaxiang / Gong, Maoguo et al. | 2021
- 2612
-
Multi-objective Simulated Annealing Variants to Infer Gene Regulatory Network: A Comparative StudyBiswas, Surama / Acharyya, Sriyankar et al. | 2021
- 2624
-
NegStacking: Drug−Target Interaction Prediction Based on Ensemble Learning and Logistic RegressionYang, Jie / He, Song / Zhang, Zhongnan / Bo, Xiaochen et al. | 2021
- 2635
-
Netboost: Boosting-Supported Network Analysis Improves High-Dimensional Omics Prediction in Acute Myeloid Leukemia and Huntington’s DiseaseSchlosser, Pascal / Knaus, Jochen / Schmutz, Maximilian / Dohner, Konstanze / Plass, Christoph / Bullinger, Lars / Claus, Rainer / Binder, Harald / Lubbert, Michael / Schumacher, Martin et al. | 2021
- 2649
-
Optimising Boolean Synthetic Regulatory Networks to Control Cell StatesTaou, Nadia / Lones, Michael et al. | 2021
- 2659
-
POPBic: Pathway-Based Order Preserving Biclustering Algorithm Towards the Analysis of Gene Expression DataMandal, Koyel / Sarmah, Rosy / Bhattacharyya, Dhruba Kumar et al. | 2021
- 2671
-
Prediction of Drug–Target Interactions Based on Network Representation Learning and Ensemble LearningXuan, Ping / Chen, Bingxu / Zhang, Tiangang / Yang, Yan et al. | 2021
- 2682
-
Protein Fold Recognition Based on Auto-Weighted Multi-View Graph Embedding Learning ModelYan, Ke / Wen, Jie / Xu, Yong / Liu, Bin et al. | 2021
- 2692
-
STIC: Predicting Single Nucleotide Variants and Tumor Purity in Cancer GenomeYuan, Xiguo / Ma, Chao / Zhao, Haiyong / Yang, Liying / Wang, Shuzhen / Xi, Jianing et al. | 2021
- 2702
-
The Impact of Self-Loops on Boolean Networks Attractor Landscape and Implications for Cell Differentiation ModellingMontagna, Sara / Braccini, Michele / Roli, Andrea et al. | 2021
- 2714
-
Unsupervised Learning Framework With Multidimensional Scaling in Predicting Epithelial-Mesenchymal TransitionsQiu, Yushan / Jiang, Hao / Ching, Wai-Ki et al. | 2021
- 2724
-
Using Convolutional Neural Networks to Measure the Physiological Age of Caenorhabditis elegansLin, Jiunn-Liang / Kuo, Wei-Liang / Huang, Yi-Hao / Jong, Tai-Lang / Hsu, Ao-Lin / Hsu, Wen-Hsing et al. | 2021
- 2733
-
WMMDCA: Prediction of Drug Responses by Weight-Based Modular Mapping in Cancer Cell LinesWang, Shiming / Li, Jie / Wang, Yadong et al. | 2021
- 2741
-
A Bridging Centrality Plugin for GEPHI and a Case Study for Mycobacterium Tuberculosis H37RvPereira, Getulio / Ghosh, Preetam / Santos, Anderson et al. | 2021
- 2747
-
A Graph-Based Approach for the DNA Word Design ProblemLuncasu, Victor / Raschip, Madalina et al. | 2021
- 2753
-
Adaptive Tracking Control for Uncertain Cancer-Tumor-Immune SystemsJiao, Hongmei / Shen, Qikun / Shi, Yan / Shi, Peng et al. | 2021
- 2759
-
An Enhanced Random Forests Approach to Predict Heart Failure From Small Imbalanced Gene Expression DataChicco, Davide / Oneto, Luca et al. | 2021
- 2766
-
Barapost: Binning of Nucleotide Sequences According to Taxonomic AnnotationSikolenko, Maxim A. / Valentovich, Leonid N. et al. | 2021
- 2768
-
CEPZ: A Novel Predictor for Identification of DNase I Hypersensitive SitesZheng, Yan / Wang, Hao / Ding, Yijie / Guo, Fei et al. | 2021
- 2775
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Deep Learning Enables Accurate Diagnosis of Novel Coronavirus (COVID-19) With CT ImagesSong, Ying / Zheng, Shuangjia / Li, Liang / Zhang, Xiang / Zhang, Xiaodong / Huang, Ziwang / Chen, Jianwen / Wang, Ruixuan / Zhao, Huiying / Chong, Yutian et al. | 2021
- 2781
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EnTSSR: A Weighted Ensemble Learning Method to Impute Single-Cell RNA Sequencing DataLu, Fan / Lin, Yilong / Yuan, Chongbin / Zhang, Xiao-Fei / Ou-Yang, Le et al. | 2021
- 2788
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Essential Protein Recognition via Community SignificanceLiu, Yan / Chen, Wenfang / He, Zengyou et al. | 2021
- 2795
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FexRNA: Exploratory Data Analysis and Feature Selection of Non-Coding RNAAmin, Noorul / McGrath, Annette / Chen, Yi-Ping Phoebe et al. | 2021
- 2802
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GapPredict – A Language Model for Resolving Gaps in Draft Genome AssembliesChen, Eric / Chu, Justin / Zhang, Jessica / Warren, Rene L. / Birol, Inanc et al. | 2021
- 2809
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iEnhancer-KL: A Novel Two-Layer Predictor for Identifying Enhancers by Position Specific of Nucleotide CompositionLyu, Yinuo / Zhang, Zhen / Li, Jiawei / He, Wenying / Ding, Yijie / Guo, Fei et al. | 2021
- 2816
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In Silico Laboratory Experiments Using Statistical Model Checking: A New Model of the Palytoxin-Induced Pump Channel as Case StudyVilallonga, Gabriel / Riesco, Daniel / de Almeida, Antonio-Carlos G. / Rodrigues, Antonio M. / Campos, Sergio V. A. et al. | 2021
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Maximum Covering Subtrees for Phylogenetic NetworksDavidov, Nathan / Hernandez, Amanda / Jian, Justin / McKenna, Patrick / Medlin, K.A. / Mojumder, Roadra / Owen, Megan / Quijano, Andrew / Rodriguez, Amanda / St. John, Katherine et al. | 2021
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Mitotic Index Determination on Live Cells From Label-Free Acquired Quantitative Phase Images Using a Supervised AutoencoderPognonec, Philippe / Gustovic, Axel / Djabari, Zied / Pourcher, Thierry / Barlaud, Michel et al. | 2021
- 2835
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Molecular Simulations and Markov State Modeling Reveal Inactive Form of Quorum Sensing Regulator SdiA of Escherichia ColiGrabski, Hovakim / Ginosyan, Siranuysh / Tiratsuyan, Susanna et al. | 2021
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PAN: Personalized Annotation-Based Networks for the Prediction of Breast Cancer RelapseNguyen, Thin / Lee, Samuel C. / Quinn, Thomas P. / Truong, Buu / Li, Xiaomei / Tran, Truyen / Venkatesh, Svetha / Le, Thuc Duy et al. | 2021
- 2848
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Protein Fold Recognition From Sequences Using Convolutional and Recurrent Neural NetworksVillegas-Morcillo, Amelia / Gomez, Angel M. / Morales-Cordovilla, Juan A. / Sanchez, Victoria et al. | 2021
- 2855
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SAQ: Semi-Algebraic Quartet ReconstructionCasanellas, Marta / Fernandez-Sanchez, Jesus / Garrote-Lopez, Marina et al. | 2021
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SNP Data Science for Classification of Bipolar Disorder I and Bipolar Disorder IILee, Chia-Yen / Zeng, Jun-Hua / Lee, Sheng-Yu / Lu, Ru-Band / Kuo, Po-Hsiu et al. | 2021
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Sorting Signed Permutations by Intergenic ReversalsOliveira, Andre Rodrigues / Jean, Geraldine / Fertin, Guillaume / Brito, Klairton Lima / Bulteau, Laurent / Dias, Ulisses / Dias, Zanoni et al. | 2021
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Spatial Distribution of Antibiotic-Producing Bacteria in Urban Areas. A Case Study in València (Spain)Maicas, Sergi / Segura-Garcia, Jaume et al. | 2021
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Understanding the Limit of Open Search in the Identification of Peptides With Post-translational Modifications — A Simulation-Based StudyDai, Jiaan / Yu, Fengchao / Zhou, Chen / Yu, Weichuan et al. | 2021
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WMLRR: A Weighted Multi-View Low Rank Representation to Identify Cancer Subtypes From Multiple Types of Omics DataSun, Yesen / Ou-Yang, Le / Dai, Dao-Qing et al. | 2021
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2021 Reviewers List| 2021