Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays (English)
- New search for: Gordon, Paul M.K.
- New search for: Gordon, Paul M.K.
- New search for: Sensen, Christoph W.
In:
Nucleic acids research
;
32
, 17
; e133
;
2004
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ISSN:
- Article (Journal) / Print
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Title:Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays
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Contributors:Gordon, Paul M.K. ( author ) / Sensen, Christoph W.
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Published in:Nucleic acids research ; 32, 17 ; e133
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Publisher:
- New search for: Oxford Univ. Press
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Place of publication:Oxford
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Publication date:2004
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ISSN:
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ZDBID:
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Type of media:Article (Journal)
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Type of material:Print
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Language:English
- New search for: 35.75
- Further information on Basic classification
- New search for: 275/3820
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Keywords:
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Source:
Table of contents – Volume 32, Issue 17
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 4955
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In silico identification of transcriptional regulators associated with c-MycElkon, Ran / Zeller, Karen I. / Linhart, Chaim / Dang, Chi V. / Shamir, Ron / Shiloh, Yosef et al. | 2004
- 4962
-
DNA computing using single-molecule hybridization detectionSchmidt, Kristiane A. / Henkel, Christiaan V. / Rozenberg, Grzegorz / Spaink, Herman P. et al. | 2004
- 4969
-
Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomesTouchon, Marie / Arneodo, Alain / d'Aubenton-Carafa, Yves / Thermes, Claude et al. | 2004
- 4979
-
Bipartite pattern discovery by entropy minimization-based multiple local alignmentBi, Chengpeng / Rogan, Peter K. et al. | 2004
- 4992
-
DNA-mediated assembly of weakly interacting DNA-binding protein subunits: in vitro recruitment of phage 434 repressor and yeast GCN4 DNA-binding domainsGuarnaccia, Corrado / Raman, Bakthisaran / Zahariev, Sotir / Simoncsits, András / Pongor, Sándor et al. | 2004
- 5003
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The post-replication repair RAD18 and RAD6 genes are involved in the prevention of spontaneous mutations caused by 7,8-dihydro-8-oxoguanine in Saccharomyces cerevisiaede Padula, Marcelo / Slezak, Guenaelle / Auffret van Der Kemp, Patricia / Boiteux, Serge et al. | 2004
- 5011
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Amplification and assembly of chip-eluted DNA (AACED): a method for high-throughput gene synthesisRichmond, Kathryn E. / Li, Mo-Huang / Rodesch, Matthew J. / Patel, Madhusudan / Lowe, Aaron M. / Kim, Changhan / Chu, Larry L. / Venkataramaian, Narasimhar / Flickinger, Shane F. / Kaysen, James et al. | 2004
- 5019
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Lsh, an epigenetic guardian of repetitive elementsHuang, Jiaqiang / Fan, Tao / Yan, Qingsheng / Zhu, Heming / Fox, Stephen / Issaq, Haleem J. / Best, Lionel / Gangi, Lisa / Munroe, David / Muegge, Kathrin et al. | 2004
- 5029
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Comparative analysis of complete genomes reveals gene loss, acquisition and acceleration of evolutionary rates in Metazoa, suggests a prevalence of evolution via gene acquisition and indicates that the evolutionary rates in animals tend to be conservedBabenko, Vladimir N. / Krylov, Dmitri M. et al. | 2004
- 5036
-
Solving the riddle of codon usage preferences: a test for translational selectionReis, Mario dos / Savva, Renos / Wernisch, Lorenz et al. | 2004
- 5045
-
Selection and evolution of NTP-specific aptamersWeill, Laure / Louis, Dominique / Sargueil, Bruno et al. | 2004
- 5059
-
HYPROSP: a hybrid protein secondary structure prediction algorithm--a knowledge-based approachWu, Kuen-Pin / Lin, Hsin-Nan / Chang, Jia-Ming / Sung, Ting-Yi / Hsu, Wen-Lian et al. | 2004
- 5066
-
Pdr3 is required for DNA damage induction of MAG1 and DDI1 via a bi-directional promoter elementZhu, Yu / Xiao, Wei et al. | 2004
- 5076
-
A yeast arginine specific tRNA is a remnant aspartate acceptorFender, Aurélie / Geslain, Renaud / Eriani, Gilbert / Giegé, Richard / Sissler, Marie / Florentz, Catherine et al. | 2004
- 5087
-
DNA adopts normal B-form upon incorporation of highly fluorescent DNA base analogue tC: NMR structure and UV-Vis spectroscopy characterizationEngman, K. Cecilia / Sandin, Peter / Osborne, Sadie / Brown, Tom / Billeter, Martin / Lincoln, Per / Nordén, Bengt / Albinsson, Bo / Wilhelmsson, L. Marcus et al. | 2004
- 5096
-
Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequencesIida, Kei / Seki, Motoaki / Sakurai, Tetsuya / Satou, Masakazu / Akiyama, Kenji / Toyoda, Tetsuro / Konagaya, Akihiko / Shinozaki, Kazuo et al. | 2004
- 5104
-
DNA polymerase b overexpression stimulates the Rad51-dependent homologous recombination in mammalian cellsCanitrot, Yvan et al. | 2004
- 5104
-
DNA polymerase {beta} overexpression stimulates the Rad51-dependent homologous recombination in mammalian cellsCanitrot, Yvan / Capp, Jean-Pascal / Puget, Nadine / Bieth, Anne / Lopez, Bernard / Hoffmann, Jean-Sébastien / Cazaux, Christophe et al. | 2004
- 5113
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Method for direct discrimination of intra- and intermolecular hydrogen bonds, and characterization of the G(:A):G(:A):G(:A):G heptad, with scalar couplings across hydrogen bondsSotoya, Hidetsugu / Matsugami, Akimasa / Ikeda, Tetsuro / Ouhashi, Kiyoshi / Uesugi, Seiichi / Katahira, Masato et al. | 2004
- 5119
-
A general role of the DNA glycosylase Nth1 in the abasic sites cleavage step of base excision repair in Schizosaccharomyces pombeAlseth, Ingrun / Korvald, Hanne / Osman, Fekret / Seeberg, Erling / Bjørås, Magnar et al. | 2004
- 5126
-
Determination of thermodynamic parameters for HIV DIS type loop-loop kissing complexesWeixlbaumer, Albert / Werner, Andreas / Flamm, Christoph / Westhof, Eric / Schroeder, Renée et al. | 2004
- 5134
-
Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/apyrimidinic endonuclease from human placentaBeloglazova, Natalia G. / Kirpota, Oleg O. / Starostin, Konstantin V. / Ishchenko, Alexander A. / Yamkovoy, Vitaly I. / Zharkov, Dmitry O. / Douglas, Kenneth T. / Nevinsky, Georgy A. et al. | 2004
- 5147
-
A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoysChen, Yu / Kortemme, Tanja / Robertson, Tim / Baker, David / Varani, Gabriele et al. | 2004
- 5163
-
Position- and orientation-specific enhancement of topoisomerase I cleavage complexes by triplex DNA structuresAntony, Smitha / Arimondo, Paola B. / Sun, Jian-Sheng / Pommier, Yves et al. | 2004
- 5174
-
AtmtPNPase is required for multiple aspects of the 18S rRNA metabolism in Arabidopsis thaliana mitochondriaPerrin, Romary / Lange, Heike / Grienenberger, Jean-Michel / Gagliardi, Dominique et al. | 2004
- 5183
-
Adjust quality scores from alignment and improve sequencing accuracyLi, Ming / Nordborg, Magnus / Li, Lei M. et al. | 2004
- 5192
-
DNA-binding domain of GCN4 induces bending of both the ATF/CREB and AP-1 binding sites of DNADragan, Anatoly I. / Liu, Yingyun / Makeyeva, Elena N. / Privalov, Peter L. et al. | 2004
- 5198
-
A codon window in mRNA downstream of the initiation codon where NGG codons give strongly reduced gene expression in Escherichia coliGonzalez de Valdivia, Ernesto I. / Isaksson, Leif A. et al. | 2004
- 5206
-
The Saccharomyces cerevisiae TRT2 tRNAThr gene upstream of STE6 is a barrier to repression in MATa cells and exerts a potential tRNA position effect in MATa cellsSimms, Tiffany A. et al. | 2004
- 5206
-
The Saccharomyces cerevisiae TRT2 tRNAThr gene upstream of STE6 is a barrier to repression in MAT{alpha} cells and exerts a potential tRNA position effect in MATa cellsSimms, Tiffany A. / Miller, Elsy C. / Buisson, Nicolas P. / Jambunathan, Nithya / Donze, David et al. | 2004
- 5214
-
Biochemical properties of Trypanosoma cruzi telomeraseMuñoz, Denise P. / Collins, Kathleen et al. | 2004
- 5223
-
The DNA primase of Sulfolobus solfataricus is activated by substrates containing a thymine-rich bubble and has a 3'-terminal nucleotidyl-transferase activityDe Falco, Mariarosaria / Fusco, Alessandra / De Felice, Mariarita / Rossi, Mosè / Pisani, Francesca M. et al. | 2004
- 5223
-
The DNA primase of Sulfolobus solfataricus is activated by substrates containing a thymine-rich bubble and has a 3prime-terminal nucleotidyl-transferase activityDe Falco, M. / Fusco, A. / De Felice, M. / Rossi, M. / Pisani, F. M. et al. | 2004
- 5231
-
PhyloGenie: automated phylome generation and analysisFrickey, Tancred / Lupas, Andrei N. et al. | 2004
- 5239
-
Camptothecin enhances the frequency of oligonucleotide-directed gene repair in mammalian cells by inducing DNA damage and activating homologous recombinationFerrara, Luciana / Kmiec, Eric B. et al. | 2004
- 5249
-
DNA double strand break repair in human bladder cancer is error prone and involves microhomology-associated end-joiningBentley, Johanne / Diggle, Christine P. / Harnden, Patricia / Knowles, Margaret A. / Kiltie, Anne E. et al. | 2004
- 5260
-
Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packagingIyer, Lakshminarayan M. / Makarova, Kira S. / Koonin, Eugene V. / Aravind, L. et al. | 2004
- 5280
-
Negative cross-talk between the human orphan nuclear receptor Nur77-NAK-1-TR3 and nuclear factor-kBHarant, Hanna et al. | 2004
- 5280
-
Negative cross-talk between the human orphan nuclear receptor Nur77/NAK-1/TR3 and nuclear factor-{kappa}BHarant, Hanna / Lindley, Ivan J. D. et al. | 2004
- 5291
-
Mutational analysis of the damage-recognition and catalytic mechanism of human SMUG1 DNA glycosylaseMatsubara, Mayumi / Tanaka, Tamon / Terato, Hiroaki / Ohmae, Eiji / Izumi, Shunsuke / Katayanagi, Katsuo / Ide, Hiroshi et al. | 2004
- 5303
-
A novel GTPase activated by the small subunit of ribosomeHimeno, Hyouta / Hanawa-Suetsugu, Kyoko / Kimura, Takatsugu / Takagi, Kuniaki / Sugiyama, Wakana / Shirata, Shinobu / Mikami, Tomoyuki / Odagiri, Fujiko / Osanai, Yukiko / Watanabe, Daisuke et al. | 2004
- 5310
-
Automated synthesis of new ferrocenyl-modified oligonucleotides: study of their properties in solutionNavarro, Aude-Emmanuelle / Spinelli, Nicolas / Moustrou, Corinne / Chaix, Carole / Mandrand, Bernard / Brisset, Hugues et al. | 2004
- e133
-
Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarraysGordon, Paul M. K. / Sensen, Christoph W. et al. | 2004
- e134
-
Gene silencing in alveolar type II cells using cell-specific promoter in vitro and in vivoGou, Deming / Narasaraju, Telugu / Chintagari, Narendranath Reddy / Jin, Nili / Wang, Pengcheng / Liu, Lin et al. | 2004
- e135
-
Molecular barcodes detect redundancy and contamination in hairpin-bisulfite PCRMiner, Brooks E. / Stöger, Reinhard J. / Burden, Alice F. / Laird, Charles D. / Hansen, R. Scott et al. | 2004
- e136
-
Protein evolution by codon-based random deletionsOsuna, Joel / Yáñez, Jorge / Soberón, Xavier / Gaytán, Paul et al. | 2004