ARDB--Antibiotic Resistance Genes Database (English)
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- New search for: Liu, Bo
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- New search for: Liu, Bo
- New search for: Pop, Mihai
In:
Nucleic acids research
;
37
, suppl_1
;
D443-
;
2009
- Article (Journal) / Electronic Resource
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Title:ARDB--Antibiotic Resistance Genes Database
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Contributors:Liu, Bo ( author ) / Pop, Mihai ( author )
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Published in:Nucleic acids research ; 37, suppl_1 ; D443-
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Publisher:
- New search for: Oxford University Press
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Publication date:2009-01-01
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 37, Issue suppl_1
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- D1
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Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009Galperin, Michael Y. / Cochrane, Guy R. et al. | 2009
- D5
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Database resources of the National Center for Biotechnology InformationSayers, Eric W. / Barrett, Tanya / Benson, Dennis A. / Bryant, Stephen H. / Canese, Kathi / Chetvernin, Vyacheslav / Church, Deanna M. / DiCuccio, Michael / Edgar, Ron / Federhen, Scott et al. | 2009
- D16
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DDBJ dealing with mass data produced by the second generation sequencerSugawara, Hideaki / Ikeo, Kazuho / Fukuchi, Satoshi / Gojobori, Takashi / Tateno, Yoshio et al. | 2009
- D19
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Petabyte-scale innovations at the European Nucleotide ArchiveCochrane, Guy / Akhtar, Ruth / Bonfield, James / Bower, Lawrence / Demiralp, Fehmi / Faruque, Nadeem / Gibson, Richard / Hoad, Gemma / Hubbard, Tim / Hunter, Christopher et al. | 2009
- D26
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GenBankBenson, Dennis A. / Karsch-Mizrachi, Ilene / Lipman, David J. / Ostell, James / Sayers, Eric W. et al. | 2009
- D32
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NCBI Reference Sequences: current status, policy and new initiativesPruitt, Kim D. / Tatusova, Tatiana / Klimke, William / Maglott, Donna R. et al. | 2009
- D37
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DiProDB: a database for dinucleotide propertiesFriedel, Maik / Nikolajewa, Swetlana / Sühnel, Jürgen / Wilhelm, Thomas et al. | 2009
- D41
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UCbase & miRfunc: a database of ultraconserved sequences and microRNA functionTaccioli, Cristian / Fabbri, Enrica / Visone, Rosa / Volinia, Stefano / Calin, George A. / Fong, Louise Y. / Gambari, Roberto / Bottoni, Arianna / Acunzo, Mario / Hagan, John et al. | 2009
- D49
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MachiBase: a Drosophila melanogaster 5'-end mRNA transcription databaseAhsan, Budrul / Saito, Taro L. / Hashimoto, Shin-ichi / Muramatsu, Keigo / Tsuda, Manabu / Sasaki, Atsushi / Matsushima, Kouji / Aigaki, Toshiro / Morishita, Shinichi et al. | 2009
- D54
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The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequencesPortales-Casamar, Elodie / Arenillas, David / Lim, Jonathan / Swanson, Magdalena I. / Jiang, Steven / McCallum, Anthony / Kirov, Stefan / Wasserman, Wyeth W. et al. | 2009
- D61
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PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotesGrote, Andreas / Klein, Johannes / Retter, Ida / Haddad, Isam / Behling, Susanne / Bunk, Boyke / Biegler, Ilona / Yarmolinetz, Svitlana / Jahn, Dieter / Münch, Richard et al. | 2009
- D66
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PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genesEverett, Logan / Vo, Antony / Hannenhalli, Sridhar et al. | 2009
- D72
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Transterm: a database to aid the analysis of regulatory sequences in mRNAsJacobs, Grant H. / Chen, Augustine / Stevens, Stewart G. / Stockwell, Peter A. / Black, Michael A. / Tate, Warren P. / Brown, Chris M. et al. | 2009
- D77
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UniPROBE: an online database of protein binding microarray data on protein-DNA interactionsNewburger, Daniel E. / Bulyk, Martha L. et al. | 2009
- D83
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BPS: a database of RNA base-pair structuresXin, Yurong / Olson, Wilma K. et al. | 2009
- D89
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The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAsMituyama, Toutai / Yamada, Kouichirou / Hattori, Emi / Okida, Hiroaki / Ono, Yukiteru / Terai, Goro / Yoshizawa, Aya / Komori, Takashi / Asai, Kiyoshi et al. | 2009
- D93
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GtRNAdb: a database of transfer RNA genes detected in genomic sequenceChan, Patricia P. / Lowe, Todd M. et al. | 2009
- D98
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miR2Disease: a manually curated database for microRNA deregulation in human diseaseJiang, Qinghua / Wang, Yadong / Hao, Yangyang / Juan, Liran / Teng, Mingxiang / Zhang, Xinjun / Li, Meimei / Wang, Guohua / Liu, Yunlong et al. | 2009
- D105
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miRecords: an integrated resource for microRNA-target interactionsXiao, Feifei / Zuo, Zhixiang / Cai, Guoshuai / Kang, Shuli / Gao, Xiaolian / Li, Tongbin et al. | 2009
- D111
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miROrtho: computational survey of microRNA genesGerlach, Daniel / Kriventseva, Evgenia V. / Rahman, Nazim / Vejnar, Charles E. / Zdobnov, Evgeny M. et al. | 2009
- D118
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MODOMICS: a database of RNA modification pathways. 2008 updateCzerwoniec, Anna / Dunin-Horkawicz, Stanislaw / Purta, Elzbieta / Kaminska, Katarzyna H. / Kasprzak, Joanna M. / Bujnicki, Janusz M. / Grosjean, Henri / Rother, Kristian et al. | 2009
- D122
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NRED: a database of long noncoding RNA expressionDinger, Marcel E. / Pang, Ken C. / Mercer, Tim R. / Crowe, Mark L. / Grimmond, Sean M. / Mattick, John S. et al. | 2009
- D127
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PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknotsTaufer, Michela / Licon, Abel / Araiza, Roberto / Mireles, David / van Batenburg, F. H. D. / Gultyaev, Alexander P. / Leung, Ming-Ying et al. | 2009
- D136
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Rfam: updates to the RNA families databaseGardner, Paul P. / Daub, Jennifer / Tate, John G. / Nawrocki, Eric P. / Kolbe, Diana L. / Lindgreen, Stinus / Wilkinson, Adam C. / Finn, Robert D. / Griffiths-Jones, Sam / Eddy, Sean R. et al. | 2009
- D141
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The Ribosomal Database Project: improved alignments and new tools for rRNA analysisCole, J. R. / Wang, Q. / Cardenas, E. / Fish, J. / Chai, B. / Farris, R. J. / Kulam-Syed-Mohideen, A. S. / McGarrell, D. M. / Marsh, T. / Garrity, G. M. et al. | 2009
- D146
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siRecords: a database of mammalian RNAi experiments and efficaciesRen, Yongliang / Gong, Wuming / Zhou, Haiyan / Wang, Yejun / Xiao, Feifei / Li, Tongbin et al. | 2009
- D150
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sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomesHuang, Hsi-Yuan / Chang, Heng-Yi / Chou, Chih-Hung / Tseng, Ching-Ping / Ho, Shinn-Ying / Yang, Chi-Dung / Ju, Yih-Wei / Huang, Hsien-Da et al. | 2009
- D155
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The database of experimentally supported targets: a functional update of TarBasePapadopoulos, Giorgos L. / Reczko, Martin / Simossis, Victor A. / Sethupathy, Praveen / Hatzigeorgiou, Artemis G. et al. | 2009
- D159
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tRNAdb 2009: compilation of tRNA sequences and tRNA genesJühling, Frank / Mörl, Mario / Hartmann, Roland K. / Sprinzl, Mathias / Stadler, Peter F. / Pütz, Joern et al. | 2009
- D163
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tRNADB-CE: tRNA gene database curated manually by expertsAbe, Takashi / Ikemura, Toshimichi / Ohara, Yasuo / Uehara, Hiroshi / Kinouchi, Makoto / Kanaya, Shigehiko / Yamada, Yuko / Muto, Akira / Inokuchi, Hachiro et al. | 2009
- D169
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The Universal Protein Resource (UniProt) 2009The UniProt Consortium, et al. | 2009
- D175
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CentrosomeDB: a human centrosomal proteins databaseNogales-Cadenas, Rubén / Abascal, Federico / Díez-Pérez, Javier / Carazo, José María / Pascual-Montano, Alberto et al. | 2009
- D181
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NOPdb: Nucleolar Proteome Database--2008 updateAhmad, Yasmeen / Boisvert, François-Michel / Gregor, Peter / Cobley, Andy / Lamond, Angus I. et al. | 2009
- D185
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Minimotif miner 2nd release: a database and web system for motif searchRajasekaran, Sanguthevar / Balla, Sudha / Gradie, Patrick / Gryk, Michael R. / Kadaveru, Krishna / Kundeti, Vamsi / Maciejewski, Mark W. / Mi, Tian / Rubino, Nicholas / Vyas, Jay et al. | 2009
- D191
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SDR: a database of predicted specificity-determining residues in proteinsDonald, Jason E. / Shakhnovich, Eugene I. et al. | 2009
- D195
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SuperSite: dictionary of metabolite and drug binding sites in proteinsBauer, Raphael André / Günther, Stefan / Jansen, Dominic / Heeger, Carolin / Thaben, Paul Florian / Preissner, Robert et al. | 2009
- D201
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TMFunction: database for functional residues in membrane proteinsGromiha, M. Michael / Yabuki, Yukimitsu / Suresh, M. Xavier / Thangakani, A. Mary / Suwa, Makiko / Fukui, Kazuhiko et al. | 2009
- D205
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CDD: specific functional annotation with the Conserved Domain DatabaseMarchler-Bauer, Aron / Anderson, John B. / Chitsaz, Farideh / Derbyshire, Myra K. / DeWeese-Scott, Carol / Fong, Jessica H. / Geer, Lewis Y. / Geer, Renata C. / Gonzales, Noreen R. / Gwadz, Marc et al. | 2009
- D211
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InterPro: the integrative protein signature databaseHunter, Sarah / Apweiler, Rolf / Attwood, Teresa K. / Bairoch, Amos / Bateman, Alex / Binns, David / Bork, Peer / Das, Ujjwal / Daugherty, Louise / Duquenne, Lauranne et al. | 2009
- D216
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The National Center for Biotechnology Information's Protein Clusters DatabaseKlimke, William / Agarwala, Richa / Badretdin, Azat / Chetvernin, Slava / Ciufo, Stacy / Fedorov, Boris / Kiryutin, Boris / ONeill, Kathleen / Resch, Wolfgang / Resenchuk, Sergei et al. | 2009
- D224
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Protein segment finder: an online search engine for segment motifs in the PDBSamson, Abraham O. / Levitt, Michael et al. | 2009
- D229
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SMART 6: recent updates and new developmentsLetunic, Ivica / Doerks, Tobias / Bork, Peer et al. | 2009
- D233
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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for GlycogenomicsCantarel, Brandi L. / Coutinho, Pedro M. / Rancurel, Corinne / Bernard, Thomas / Lombard, Vincent / Henrissat, Bernard et al. | 2009
- D239
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The Degradome database: mammalian proteases and diseases of proteolysisQuesada, Víctor / Ordóñez, Gonzalo R. / Sánchez, Luis M. / Puente, Xose S. / López-Otín, Carlos et al. | 2009
- D244
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Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinasesMartin, David M. A. / Miranda-Saavedra, Diego / Barton, Geoffrey J. et al. | 2009
- D251
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OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion moleculesLi, Chuan-Yun / Liu, Qing-Rong / Zhang, Ping-Wu / Li, Xiao-Mo / Wei, Liping / Uhl, George R. et al. | 2009
- D261
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PeroxiBase: a database with new tools for peroxidase family classificationKoua, Dominique / Cerutti, Lorenzo / Falquet, Laurent / Sigrist, Christian J. A. / Theiler, Grégory / Hulo, Nicolas / Dunand, Christophe et al. | 2009
- D267
-
SysZNF: the C2H2 zinc finger gene databaseDing, Guohui / Lorenz, Peter / Kreutzer, Michael / Li, Yixue / Thiesen, Hans-Juergen et al. | 2009
- D274
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The Transporter Classification Database: recent advancesSaier, Milton H. / Yen, Ming Ren / Noto, Keith / Tamang, Dorjee G. / Elkan, Charles et al. | 2009
- D279
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Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arraysFu, Fengli / Sander, Jeffry D. / Maeder, Morgan / Thibodeau-Beganny, Stacey / Joung, J. Keith / Dobbs, Drena / Miller, Leslie / Voytas, Daniel F. et al. | 2009
- D284
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MMsINC: a large-scale chemoinformatics databaseMasciocchi, Joel / Frau, Gianfranco / Fanton, Marco / Sturlese, Mattia / Floris, Matteo / Pireddu, Luca / Palla, Piergiorgio / Cedrati, Fabian / Rodriguez-Tomé, Patricia / Moro, Stefano et al. | 2009
- D291
-
SuperScent--a database of flavors and scentsDunkel, Mathias / Schmidt, Ulrike / Struck, Swantje / Berger, Lena / Gruening, Bjoern / Hossbach, Julia / Jaeger, Ines S. / Effmert, Uta / Piechulla, Birgit / Eriksson, Roger et al. | 2009
- D295
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SuperToxic: a comprehensive database of toxic compoundsSchmidt, Ulrike / Struck, Swantje / Gruening, Bjoern / Hossbach, Julia / Jaeger, Ines S. / Parol, Roza / Lindequist, Ulrike / Teuscher, Eberhard / Preissner, Robert et al. | 2009
- D300
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3did Update: domain-domain and peptide-mediated interactions of known 3D structureStein, Amelie / Panjkovich, Alejandro / Aloy, Patrick et al. | 2009
- D305
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AS-ALPS: a database for analyzing the effects of alternative splicing on protein structure, interaction and network in human and mouseShionyu, Masafumi / Yamaguchi, Akihiro / Shinoda, Kazuki / Takahashi, Ken-ichi / Go, Mitiko et al. | 2009
- D310
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The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamiliesCuff, Alison L. / Sillitoe, Ian / Lewis, Tony / Redfern, Oliver C. / Garratt, Richard / Thornton, Janet / Orengo, Christine A. et al. | 2009
- D315
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CC+: a relational database of coiled-coil structuresTesta, Oliver D. / Moutevelis, Efrosini / Woolfson, Derek N. et al. | 2009
- D323
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The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structuresGoldenberg, Ofir / Erez, Elana / Nimrod, Guy / Ben-Tal, Nir et al. | 2009
- D328
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CPDB: a database of circular permutation in proteinsLo, Wei-Cheng / Lee, Chi-Ching / Lee, Che-Yu / Lyu, Ping-Chiang et al. | 2009
- D333
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The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functionsFukuchi, Satoshi / Homma, Keiichi / Sakamoto, Shigetaka / Sugawara, Hideaki / Tateno, Yoshio / Gojobori, Takashi / Nishikawa, Ken et al. | 2009
- D338
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JAIL: a structure-based interface library for macromoleculesGünther, Stefan / von Eichborn, Joachim / May, Patrick / Preissner, Robert et al. | 2009
- D342
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KineticDB: a database of protein folding kineticsBogatyreva, Natalya S. / Osypov, Alexander A. / Ivankov, Dmitry N. et al. | 2009
- D347
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MODBASE, a database of annotated comparative protein structure models and associated resourcesPieper, Ursula / Eswar, Narayanan / Webb, Ben M. / Eramian, David / Kelly, Libusha / Barkan, David T. / Carter, Hannah / Mankoo, Parminder / Karchin, Rachel / Marti-Renom, Marc A. et al. | 2009
- D355
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PDBsum new thingsLaskowski, Roman A. et al. | 2009
- D360
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PiSite: a database of protein interaction sites using multiple binding states in the PDBHigurashi, Miho / Ishida, Takashi / Kinoshita, Kengo et al. | 2009
- D365
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The protein structure initiative structural genomics knowledgebaseBerman, Helen M. / Westbrook, John D. / Gabanyi, Margaret J. / Tao, Wendy / Shah, Raship / Kouranov, Andrei / Schwede, Torsten / Arnold, Konstantin / Kiefer, Florian / Bordoli, Lorenza et al. | 2009
- D369
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RsiteDB: a database of protein binding pockets that interact with RNA nucleotide basesShulman-Peleg, Alexandra / Nussinov, Ruth / Wolfson, Haim J. et al. | 2009
- D374
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SPROUTS: a database for the evaluation of protein stability upon point mutationLonquety, Mathieu / Lacroix, Zoé / Papandreou, Nikolaos / Chomilier, Jacques et al. | 2009
- D380
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SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogenyWilson, Derek / Pethica, Ralph / Zhou, Yiduo / Talbot, Charles / Vogel, Christine / Madera, Martin / Chothia, Cyrus / Gough, Julian et al. | 2009
- D387
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The SWISS-MODEL Repository and associated resourcesKiefer, Florian / Arnold, Konstantin / Künzli, Michael / Bordoli, Lorenza / Schwede, Torsten et al. | 2009
- D393
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Voronoia: analyzing packing in protein structuresRother, Kristian / Hildebrand, Peter Werner / Goede, Andrean / Gruening, Bjoern / Preissner, Robert et al. | 2009
- D396
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The GOA database in 2009--an integrated Gene Ontology Annotation resourceBarrell, Daniel / Dimmer, Emily / Huntley, Rachael P. / Binns, David / ODonovan, Claire / Apweiler, Rolf et al. | 2009
- D404
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Selectome: a database of positive selectionProux, Estelle / Studer, Romain A. / Moretti, Sébastien / Robinson-Rechavi, Marc et al. | 2009
- D408
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PEDANT covers all complete RefSeq genomesWalter, Mathias C. / Rattei, Thomas / Arnold, Roland / Güldener, Ulrich / Münsterkötter, Martin / Nenova, Karamfilka / Kastenmüller, Gabi / Tischler, Patrick / Wölling, Andreas / Volz, Andreas et al. | 2009
- D412
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STRING 8--a global view on proteins and their functional interactions in 630 organismsJensen, Lars J. / Kuhn, Michael / Stark, Manuel / Chaffron, Samuel / Creevey, Chris / Muller, Jean / Doerks, Tobias / Julien, Philippe / Roth, Alexander / Simonovic, Milan et al. | 2009
- D417
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Human immunodeficiency virus type 1, human protein interaction database at NCBIFu, William / Sanders-Beer, Brigitte E. / Katz, Kenneth S. / Maglott, Donna R. / Pruitt, Kim D. / Ptak, Roger G. et al. | 2009
- D423
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Influenza sequence and epitope databaseYang, Seok / Lee, Joo-Yeon / Lee, Joon Seung / Mitchell, Wayne P. / Oh, Hee-Bok / Kang, Chun / Kim, Kyung Hyun et al. | 2009
- D431
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The RNA Virus DatabaseBelshaw, Robert / de Oliveira, Tulio / Markowitz, Sidney / Rambaut, Andrew et al. | 2009
- D436
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VIPERdb2: an enhanced and web API enabled relational database for structural virologyCarrillo-Tripp, Mauricio / Shepherd, Craig M. / Borelli, Ian A. / Venkataraman, Sangita / Lander, Gabriel / Natarajan, Padmaja / Johnson, John E. / Brooks, Charles L. / Reddy, Vijay S. et al. | 2009
- D443
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ARDB--Antibiotic Resistance Genes DatabaseLiu, Bo / Pop, Mihai et al. | 2009
- D448
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ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotesNovichkov, Pavel S. / Ratnere, Igor / Wolf, Yuri I. / Koonin, Eugene V. / Dubchak, Inna et al. | 2009
- D455
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DEG 5.0, a database of essential genes in both prokaryotes and eukaryotesZhang, Ren / Lin, Yan et al. | 2009
- D459
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DOOR: a database for prokaryotic operonsMao, Fenglou / Dam, Phuongan / Chou, Jacky / Olman, Victor / Xu, Ying et al. | 2009
- D464
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EcoCyc: A comprehensive view of Escherichia coli biologyKeseler, Ingrid M. / Bonavides-Martínez, César / Collado-Vides, Julio / Gama-Castro, Socorro / Gunsalus, Robert P. / Johnson, D. Aaron / Krummenacker, Markus / Nolan, Laura M. / Paley, Suzanne / Paulsen, Ian T. et al. | 2009
- D471
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HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-ProtLima, Tania / Auchincloss, Andrea H. / Coudert, Elisabeth / Keller, Guillaume / Michoud, Karine / Rivoire, Catherine / Bulliard, Virginie / de Castro, Edouard / Lachaize, Corinne / Baratin, Delphine et al. | 2009
- D479
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OperonDB: a comprehensive database of predicted operons in microbial genomesPertea, Mihaela / Ayanbule, Kunmi / Smedinghoff, Megan / Salzberg, Steven L. et al. | 2009
- D483
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Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomesWinsor, Geoffrey L. / Van Rossum, Thea / Lo, Raymond / Khaira, Bhavjinder / Whiteside, Matthew D. / Hancock, Robert E. W. / Brinkman, Fiona S. L. et al. | 2009
- D489
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rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaeaLee, Zarraz May-Ping / Bussema, Carl / Schmidt, Thomas M. et al. | 2009
- D494
-
Strepto-DB, a database for comparative genomics of group A (GAS) and B (GBS) streptococci, implemented with the novel database platform 'Open Genome Resource' (OGeR)Klein, Johannes / Münch, Richard / Biegler, Ilona / Haddad, Isam / Retter, Ida / Jahn, Dieter et al. | 2009
- D499
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TB database: an integrated platform for tuberculosis researchReddy, T. B. K. / Riley, Robert / Wymore, Farrell / Montgomery, Phillip / DeCaprio, Dave / Engels, Reinhard / Gellesch, Marcel / Hubble, Jeremy / Jen, Dennis / Jin, Heng et al. | 2009
- D509
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Aspergillus Genomes and the Aspergillus CloudMabey Gilsenan, Jane E. / Atherton, Graham / Bartholomew, Jennifer / Giles, Peter F. / Attwood, Teresa K. / Denning, David W. / Bowyer, Paul et al. | 2009
- D515
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dictyBase--a Dictyostelium bioinformatics resource updateFey, Petra / Gaudet, Pascale / Curk, Tomaz / Zupan, Blaz / Just, Eric M. / Basu, Siddhartha / Merchant, Sohel N. / Bushmanova, Yulia A. / Shaulsky, Gad / Kibbe, Warren A. et al. | 2009
- D520
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Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009Wakaguri, Hiroyuki / Suzuki, Yutaka / Katayama, Toshiaki / Kawashima, Shuichi / Kibukawa, Eri / Hiranuka, Kazushi / Sasaki, Masahide / Sugano, Sumio / Watanabe, Junichi et al. | 2009
- D526
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GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalisAurrecoechea, Cristina / Brestelli, John / Brunk, Brian P. / Carlton, Jane M. / Dommer, Jennifer / Fischer, Steve / Gajria, Bindu / Gao, Xin / Gingle, Alan / Grant, Greg et al. | 2009
- D531
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metaTIGER: a metabolic evolution resourceWhitaker, John W. / Letunic, Ivica / McConkey, Glenn A. / Westhead, David R. et al. | 2009
- D539
-
PlasmoDB: a functional genomic database for malaria parasitesAurrecoechea, Cristina / Brestelli, John / Brunk, Brian P. / Dommer, Jennifer / Fischer, Steve / Gajria, Bindu / Gao, Xin / Gingle, Alan / Grant, Greg / Harb, Omar S. et al. | 2009
- D544
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TcSNP: a database of genetic variation in Trypanosoma cruziAckermann, Alejandro A. / Carmona, Santiago J. / Agüero, Fernán et al. | 2009
- D550
-
Genolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomesSherman, David J. / Martin, Tiphaine / Nikolski, Macha / Cayla, Cyril / Souciet, Jean-Luc / Durrens, Pascal / for the Génolevures Consortium, et al. | 2009
- D555
-
FlyBase: enhancing Drosophila Gene Ontology annotationsTweedie, Susan / Ashburner, Michael / Falls, Kathleen / Leyland, Paul / McQuilton, Peter / Marygold, Steven / Millburn, Gillian / Osumi-Sutherland, David / Schroeder, Andrew / Seal, Ruth et al. | 2009
- D560
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FlyEx, the quantitative atlas on segmentation gene expression at cellular resolutionPisarev, Andrei / Poustelnikova, Ekaterina / Samsonova, Maria / Reinitz, John et al. | 2009
- D567
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FLYSNPdb: a high-density SNP database of Drosophila melanogasterChen, Doris / Berger, Jürg / Fellner, Michaela / Suzuki, Takashi et al. | 2009
- D571
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Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomicsMartin, John / Abubucker, Sahar / Wylie, Todd / Yin, Yong / Wang, Zhengyuan / Mitreva, Makedonka et al. | 2009
- D579
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SchistoDB: a Schistosoma mansoni genome resourceZerlotini, Adhemar / Heiges, Mark / Wang, Haiming / Moraes, Romulo L. V. / Dominitini, Anderson J. / Ruiz, Jerônimo C. / Kissinger, Jessica C. / Oliveira, Guilherme et al. | 2009
- D583
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VectorBase: a data resource for invertebrate vector genomicsLawson, Daniel / Arensburger, Peter / Atkinson, Peter / Besansky, Nora J. / Bruggner, Robert V. / Butler, Ryan / Campbell, Kathryn S. / Christophides, George K. / Christley, Scott / Dialynas, Emmanuel et al. | 2009
- D588
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BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009Chang, Antje / Scheer, Maurice / Grote, Andreas / Schomburg, Ida / Schomburg, Dietmar et al. | 2009
- D593
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ExplorEnz: the primary source of the IUBMB enzyme listMcDonald, Andrew G. / Boyce, Sinéad / Tipton, Keith F. et al. | 2009
- D598
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Bionemo: molecular information on biodegradation metabolismCarbajosa, Guillermo / Trigo, Almudena / Valencia, Alfonso / Cases, Ildefonso et al. | 2009
- D603
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HMDB: a knowledgebase for the human metabolomeWishart, David S. / Knox, Craig / Guo, An Chi / Eisner, Roman / Young, Nelson / Gautam, Bijaya / Hau, David D. / Psychogios, Nick / Dong, Edison / Bouatra, Souhaila et al. | 2009
- D611
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PMAP: databases for analyzing proteolytic events and pathwaysIgarashi, Yoshinobu / Heureux, Emily / Doctor, Kutbuddin S. / Talwar, Priti / Gramatikova, Svetlana / Gramatikoff, Kosi / Zhang, Ying / Blinov, Michael / Ibragimova, Salmaz S. / Boyd, Sarah et al. | 2009
- D619
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Reactome knowledgebase of human biological pathways and processesMatthews, Lisa / Gopinath, Gopal / Gillespie, Marc / Caudy, Michael / Croft, David / de Bono, Bernard / Garapati, Phani / Hemish, Jill / Hermjakob, Henning / Jassal, Bijay et al. | 2009
- D623
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ConsensusPathDB--a database for integrating human functional interaction networksKamburov, Atanas / Wierling, Christoph / Lehrach, Hans / Herwig, Ralf et al. | 2009
- D629
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EcID. A database for the inference of functional interactions in E. coliAndres Leon, Eduardo / Ezkurdia, Iakes / García, Beatriz / Valencia, Alfonso / Juan, David et al. | 2009
- D636
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Update of KDBI: Kinetic Data of Bio-molecular Interaction databaseKumar, Pankaj / Han, B. C. / Shi, Z. / Jia, J. / Wang, Y. P. / Zhang, Y. T. / Liang, L. / Liu, Q. F. / Ji, Z. L. / Chen, Y. Z. et al. | 2009
- D642
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Michigan molecular interactions r2: from interacting proteins to pathwaysTarcea, V. Glenn / Weymouth, Terry / Ade, Alex / Bookvich, Aaron / Gao, Jing / Mahavisno, Vasudeva / Wright, Zach / Chapman, Adriane / Jayapandian, Magesh / Özgür, Arzucan et al. | 2009
- D647
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PIG--the pathogen interaction gatewayDriscoll, Tim / Dyer, Matthew D. / Murali, T. M. / Sobral, Bruno W. et al. | 2009
- D651
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PIPs: human protein-protein interaction prediction databaseMcDowall, Mark D. / Scott, Michelle S. / Barton, Geoffrey J. et al. | 2009
- D657
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UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactomeChaurasia, Gautam / Malhotra, Soniya / Russ, Jenny / Schnoegl, Sigrid / Hänig, Christian / Wanker, Erich E. / Futschik, Matthias E. et al. | 2009
- D661
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VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networksNavratil, Vincent / de Chassey, Benoît / Meyniel, Laurène / Delmotte, Stéphane / Gautier, Christian / André, Patrice / Lotteau, Vincent / Rabourdin-Combe, Chantal et al. | 2009
- D669
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VirusMINT: a viral protein interaction databaseChatr-aryamontri, Andrew / Ceol, Arnaud / Peluso, Daniele / Nardozza, Aurelio / Panni, Simona / Sacco, Francesca / Tinti, Michele / Smolyar, Alex / Castagnoli, Luisa / Vidal, Marc et al. | 2009
- D674
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PID: the Pathway Interaction DatabaseSchaefer, Carl F. / Anthony, Kira / Krupa, Shiva / Buchoff, Jeffrey / Day, Matthew / Hannay, Timo / Buetow, Kenneth H. et al. | 2009
- D680
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IUPHAR-DB: the IUPHAR database of G protein-coupled receptors and ion channelsHarmar, Anthony J. / Hills, Rebecca A. / Rosser, Edward M. / Jones, Martin / Buneman, O. Peter / Dunbar, Donald R. / Greenhill, Stuart D. / Hale, Valerie A. / Sharman, Joanna L. / Bonner, Tom I. et al. | 2009
- D686
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CleanEST: a database of cleansed EST librariesLee, Byungwook / Shin, Gwangsik et al. | 2009
- D690
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Ensembl 2009Hubbard, T. J. P. / Aken, B. L. / Ayling, S. / Ballester, B. / Beal, K. / Bragin, E. / Brent, S. / Chen, Y. / Clapham, P. / Clarke, L. et al. | 2009
- D698
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EVOG: a database for evolutionary analysis of overlapping genesKim, Dae-Soo / Cho, Chi-Young / Huh, Jae-Won / Kim, Heui-Soo / Cho, Hwan-Gue et al. | 2009
- D703
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ExDom: an integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotesBhasi, Ashwini / Philip, Philge / Manikandan, Vinu / Senapathy, Periannan et al. | 2009
- D712
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The Mouse Genome Database genotypes::phenotypesBlake, Judith A. / Bult, Carol J. / Eppig, Janan T. / Kadin, James A. / Richardson, Joel E. / the Mouse Genome Database Group, et al. | 2009
- D720
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Mouse Phenome DatabaseGrubb, Stephen C. / Maddatu, Terry P. / Bult, Carol J. / Bogue, Molly A. et al. | 2009
- D731
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PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhoodHulsen, Tim / Groenen, Peter M. A. / de Vlieg, Jacob / Alkema, Wynand et al. | 2009
- D738
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Pseudofam: the pseudogene families databaseLam, Hugo Y. K. / Khurana, Ekta / Fang, Gang / Cayting, Philip / Carriero, Nicholas / Cheung, Kei-Hoi / Gerstein, Mark B. et al. | 2009
- D744
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The Rat Genome Database 2009: variation, ontologies and pathwaysDwinell, Melinda R. / Worthey, Elizabeth A. / Shimoyama, Mary / Bakir-Gungor, Burcu / DePons, Jeffrey / Laulederkind, Stanley / Lowry, Timothy / Nigram, Rajni / Petri, Victoria / Smith, Jennifer et al. | 2009
- D750
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SpBase: the sea urchin genome database and web siteCameron, R. Andrew / Samanta, Manoj / Yuan, Autumn / He, Dong / Davidson, Eric et al. | 2009
- D755
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The UCSC Genome Browser Database: update 2009Kuhn, R. M. / Karolchik, D. / Zweig, A. S. / Wang, T. / Smith, K. E. / Rosenbloom, K. R. / Rhead, B. / Raney, B. J. / Pohl, A. / Pheasant, M. et al. | 2009
- D762
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Human Gene and Protein Database (HGPD): a novel database presenting a large quantity of experiment-based results in human proteomicsMaruyama, Yukio / Wakamatsu, Ai / Kawamura, Yoshifumi / Kimura, Kouichi / Yamamoto, Jun-ichi / Nishikawa, Tetsuo / Kisu, Yasutomo / Sugano, Sumio / Goshima, Naoki / Isogai, Takao et al. | 2009
- D767
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Human Protein Reference Database--2009 updateKeshava Prasad, T. S. / Goel, Renu / Kandasamy, Kumaran / Keerthikumar, Shivakumar / Kumar, Sameer / Mathivanan, Suresh / Telikicherla, Deepthi / Raju, Rajesh / Shafreen, Beema / Venugopal, Abhilash et al. | 2009
- D773
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Human Proteinpedia: a unified discovery resource for proteomics researchKandasamy, Kumaran / Keerthikumar, Shivakumar / Goel, Renu / Mathivanan, Suresh / Patankar, Nandini / Shafreen, Beema / Renuse, Santosh / Pawar, Harsh / Ramachandra, Y. L. / Acharya, Pradip Kumar et al. | 2009
- D782
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BodyParts3D: 3D structure database for anatomical conceptsMitsuhashi, Nobutaka / Fujieda, Kaori / Tamura, Takuro / Kawamoto, Shoko / Takagi, Toshihisa / Okubo, Kousaku et al. | 2009
- D786
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Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networksDavis, Allan Peter / Murphy, Cynthia G. / Saraceni-Richards, Cynthia A. / Rosenstein, Michael C. / Wiegers, Thomas C. / Mattingly, Carolyn J. et al. | 2009
- D793
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McKusick's Online Mendelian Inheritance in Man (OMIM(R))Amberger, Joanna / Bocchini, Carol A. / Scott, Alan F. / Hamosh, Ada et al. | 2009
- D797
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HGVbaseG2P: a central genetic association databaseThorisson, Gudmundur A. / Lancaster, Owen / Free, Robert C. / Hastings, Robert K. / Sarmah, Pallavi / Dash, Debasis / Brahmachari, Samir K. / Brookes, Anthony J. et al. | 2009
- D803
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SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization systemPico, Alexander R. / Smirnov, Ivan V. / Chang, Jeffrey S. / Yeh, Ru-Fang / Wiemels, Joseph L. / Wiencke, John K. / Tihan, Tarik / Conklin, Bruce R. / Wrensch, Margaret et al. | 2009
- D810
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VarySysDB: a human genetic polymorphism database based on all H-InvDB transcriptsShimada, Makoto K. / Matsumoto, Ryuzou / Hayakawa, Yosuke / Sanbonmatsu, Ryoko / Gough, Craig / Yamaguchi-Kabata, Yumi / Yamasaki, Chisato / Imanishi, Tadashi / Gojobori, Takashi et al. | 2009
- D816
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CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigensAlmeida, Luiz Gonzaga / Sakabe, Noboru J. / deOliveira, Alice R. / Silva, Maria Cristina C. / Mundstein, Alex S. / Cohen, Tzeela / Chen, Yao-Tseng / Chua, Ramon / Gurung, Sita / Gnjatic, Sacha et al. | 2009
- D820
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Database for exploration of functional context of genes implicated in ovarian cancerKaur, Mandeep / Radovanovic, Aleksandar / Essack, Magbubah / Schaefer, Ulf / Maqungo, Monique / Kibler, Tracey / Schmeier, Sebastian / Christoffels, Alan / Narasimhan, Kothandaraman / Choolani, Mahesh et al. | 2009
- D824
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MoKCa database--mutations of kinases in cancerRichardson, Christopher J. / Gao, Qiong / Mitsopoulous, Costas / Zvelebil, Marketa / Pearl, Laurence H. / Pearl, Frances M. G. et al. | 2009
- D832
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AutDB: a gene reference resource for autism researchBasu, Saumyendra N. / Kollu, Ravi / Banerjee-Basu, Sharmila et al. | 2009
- D837
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DNAReplication: a database of information and resources for the eukaryotic DNA replication communityCotterill, Sue / Kearsey, Stephen E. et al. | 2009
- D840
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ERGR: An ethanol-related gene resourceGuo, An-Yuan / Webb, Bradley T. / Miles, Michael F. / Zimmerman, Mark P. / Kendler, Kenneth S. / Zhao, Zhongming et al. | 2009
- D846
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G2Cdb: the Genes to Cognition databaseCroning, Mike D. R. / Marshall, Michael C. / McLaren, Peter / Armstrong, J. Douglas / Grant, Seth G. N. et al. | 2009
- D852
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INTERFEROME: the database of interferon regulated genesSamarajiwa, Shamith A. / Forster, Sam / Auchettl, Katie / Hertzog, Paul J. et al. | 2009
- D858
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MDPD: an integrated genetic information resource for Parkinson's diseaseTang, Suisheng / Zhang, Zhuo / Kavitha, Gopalakrishnan / Tan, Eng-King / Ng, See Kiong et al. | 2009
- D863
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RAPID: Resource of Asian Primary Immunodeficiency DiseasesKeerthikumar, Shivakumar / Raju, Rajesh / Kandasamy, Kumaran / Hijikata, Atsushi / Ramabadran, Subhashri / Balakrishnan, Lavanya / Ahmed, Mukhtar / Rani, Sandhya / Selvan, Lakshmi Dhevi N. / Somanathan, Devi S. et al. | 2009
- D868
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ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expressionParkinson, Helen / Kapushesky, Misha / Kolesnikov, Nikolay / Rustici, Gabriella / Shojatalab, Mohammad / Abeygunawardena, Niran / Berube, Hugo / Dylag, Miroslaw / Emam, Ibrahim / Farne, Anna et al. | 2009
- D873
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BloodExpress: a database of gene expression in mouse haematopoiesisMiranda-Saavedra, Diego / De, Subhajyoti / Trotter, Matthew W. / Teichmann, Sarah A. / Göttgens, Berthold et al. | 2009
- D880
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CleanEx: new data extraction and merging tools based on MeSH term annotationPraz, Viviane / Bucher, Philipp et al. | 2009
- D885
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NCBI GEO: archive for high-throughput functional genomic dataBarrett, Tanya / Troup, Dennis B. / Wilhite, Stephen E. / Ledoux, Pierre / Rudnev, Dmitry / Evangelista, Carlos / Kim, Irene F. / Soboleva, Alexandra / Tomashevsky, Maxim / Marshall, Kimberly A. et al. | 2009
- D891
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GermSAGE: a comprehensive SAGE database for transcript discovery on male germ cell developmentLee, Tin-Lap / Cheung, Hoi-Hung / Claus, Janek / Sastry, Chandan / Singh, Sumeeta / Vu, Loc / Rennert, Owen / Chan, Wai-Yee et al. | 2009
- D898
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Implementation of GenePattern within the Stanford Microarray DatabaseHubble, Jeremy / Demeter, Janos / Jin, Heng / Mao, Maria / Nitzberg, Michael / Reddy, T. B. K. / Wymore, Farrell / Zachariah, Zachariah K. / Sherlock, Gavin / Ball, Catherine A. et al. | 2009
- D902
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MAPU 2.0: high-accuracy proteomes mapped to genomesGnad, Florian / Oroshi, Mario / Birney, Ewan / Mann, Matthias et al. | 2009
- D907
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Sys-BodyFluid: a systematical database for human body fluid proteome researchLi, Su-Jun / Peng, Mao / Li, Hong / Liu, Bo-Shu / Wang, Chuan / Wu, Jia-Rui / Li, Yi-Xue / Zeng, Rong et al. | 2009
- D913
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SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometryXi, Hong / Park, Jongsun / Ding, Guohui / Lee, Yong-Hwan / Li, Yixue et al. | 2009
- D921
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Deja vu: a database of highly similar citations in the scientific literatureErrami, Mounir / Sun, Zhaohui / Long, Tara C. / George, Angela C. / Garner, Harold R. et al. | 2009
- D925
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Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell linesRomano, Paolo / Manniello, Assunta / Aresu, Ottavia / Armento, Massimiliano / Cesaro, Michela / Parodi, Barbara et al. | 2009
- D933
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APD2: the updated antimicrobial peptide database and its application in peptide designWang, Guangshun / Li, Xia / Wang, Zhe et al. | 2009
- D938
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OligoArrayDb: pangenomic oligonucleotide microarray probe sets databaseRouillard, Jean-Marie / Gulari, Erdogan et al. | 2009
- D942
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RTPrimerDB: the portal for real-time PCR primers and probesLefever, Steve / Vandesompele, Jo / Speleman, Frank / Pattyn, Filip et al. | 2009
- D946
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GOBASE: an organelle genome databaseOBrien, Emmet A. / Zhang, Yue / Wang, Eric / Marie, Veronique / Badejoko, Wole / Lang, B. Franz / Burger, Gertraud et al. | 2009
- D951
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AutoSNPdb: an annotated single nucleotide polymorphism database for crop plantsDuran, Chris / Appleby, Nikki / Clark, Terry / Wood, David / Imelfort, Michael / Batley, Jacqueline / Edwards, David et al. | 2009
- D954
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GabiPD: the GABI primary database--a plant integrative 'omics' databaseRiaño-Pachón, Diego Mauricio / Nagel, Axel / Neigenfind, Jost / Wagner, Robert / Basekow, Rico / Weber, Elke / Mueller-Roeber, Bernd / Diehl, Svenja / Kersten, Birgit et al. | 2009
- D960
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P3DB: a plant protein phosphorylation databaseGao, Jianjiong / Agrawal, Ganesh Kumar / Thelen, Jay J. / Xu, Dong et al. | 2009
- D963
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PhytAMP: a database dedicated to antimicrobial plant peptidesHammami, Riadh / Ben Hamida, Jeannette / Vergoten, Gérard / Fliss, Ismail et al. | 2009
- D969
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PPDB, the Plant Proteomics Database at CornellSun, Qi / Zybailov, Boris / Majeran, Wojciech / Friso, Giulia / Olinares, Paul Dominic B. / van Wijk, Klaas J. et al. | 2009
- D975
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Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in ArabidopsisPeng, Zhi-yu / Zhou, Xin / Li, Linchuan / Yu, Xiangchun / Li, Hongjiang / Jiang, Zhiqiang / Cao, Guangyu / Bai, Mingyi / Wang, Xingchun / Jiang, Caifu et al. | 2009
- D983
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AthaMap, integrating transcriptional and post-transcriptional dataBülow, Lorenz / Engelmann, Stefan / Schindler, Martin / Hehl, Reinhard et al. | 2009
- D987
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ATTED-II provides coexpressed gene networks for ArabidopsisObayashi, Takeshi / Hayashi, Shinpei / Saeki, Motoshi / Ohta, Hiroyuki / Kinoshita, Kengo et al. | 2009
- D992
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OryGenesDB 2008 update: database interoperability for functional genomics of riceDroc, Gaëtan / Périn, Christophe / Fromentin, Sébastien / Larmande, Pierre et al. | 2009
- D996
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RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genomeThongjuea, Supat / Ruanjaichon, Vinitchan / Bruskiewich, Richard / Vanavichit, Apichart et al. | 2009
- D1001
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Update of the Diatom EST Database: a new tool for digital transcriptomicsMaheswari, Uma / Mock, Thomas / Armbrust, E. Virginia / Bowler, Chris et al. | 2009
- D1006
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IMGT(R), the international ImMunoGeneTics information system(R)Lefranc, Marie-Paule / Giudicelli, Véronique / Ginestoux, Chantal / Jabado-Michaloud, Joumana / Folch, Géraldine / Bellahcene, Fatena / Wu, Yan / Gemrot, Elodie / Brochet, Xavier / Lane, Jérôme et al. | 2009
- D1013
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The IMGT/HLA databaseRobinson, James / Waller, Matthew J. / Fail, Sylvie C. / McWilliam, Hamish / Lopez, Rodrigo / Parham, Peter / Marsh, Steven G. E. et al. | 2009
- D1018
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The HuRef Browser: a web resource for individual human genomicsAxelrod, Nelson / Lin, Yuan / Ng, Pauline C. / Stockwell, Timothy B. / Crabtree, Jonathan / Huang, Jiaqi / Kirkness, Ewen / Strausberg, Robert L. / Frazier, Marvin E. / Venter, J. Craig et al. | 2009
- D1025
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The YH database: the first Asian diploid genome databaseLi, Guoqing / Ma, Lijia / Song, Chao / Yang, Zhentao / Wang, Xiulan / Huang, Hui / Li, Yingrui / Li, Ruiqiang / Zhang, Xiuqing / Yang, Huanming et al. | 2009
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Nucleic Acids Research: VOLUME 37 DATABASE ISSUE JANUARY 1, 2009| 2009
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