Low-homology protein threading (English)
- New search for: Peng, Jian
- New search for: Xu, Jinbo
- New search for: Peng, Jian
- New search for: Xu, Jinbo
In:
Bioinformatics
;
26
, 12
;
i294-
;
2010
- Article (Journal) / Electronic Resource
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Title:Low-homology protein threading
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Contributors:Peng, Jian ( author ) / Xu, Jinbo ( author )
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Published in:Bioinformatics ; 26, 12 ; i294-
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Publisher:
- New search for: Oxford University Press
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Publication date:2010-06-15
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 26, Issue 12
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1473
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Characterization of the N-ATPase, a distinct, laterally transferred Na+-translocating form of the bacterial F-type membrane ATPaseDibrova, Daria V. / Galperin, Michael Y. / Mulkidjanian, Armen Y. et al. | 2010
- 1477
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UMA and MABP domains throw light on receptor endocytosis and selection of endosomal cargoesde Souza, Robson F. / Aravind, L. et al. | 2010
- 1481
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A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matchesKristensen, David M. / Kannan, Lavanya / Coleman, Michael K. / Wolf, Yuri I. / Sorokin, Alexander / Koonin, Eugene V. / Mushegian, Arcady et al. | 2010
- 1488
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Ergatis: a web interface and scalable software system for bioinformatics workflowsOrvis, Joshua / Crabtree, Jonathan / Galens, Kevin / Gussman, Aaron / Inman, Jason M. / Lee, Eduardo / Nampally, Sreenath / Riley, David / Sundaram, Jaideep P. / Felix, Victor et al. | 2010
- 1493
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Ligand-binding site prediction of proteins based on known fragment-fragment interactionsKasahara, Kota / Kinoshita, Kengo / Takagi, Toshihisa et al. | 2010
- 1500
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Supersplat--spliced RNA-seq alignmentBryant, Douglas W. / Shen, Rongkun / Priest, Henry D. / Wong, Weng-Keen / Mockler, Todd C. et al. | 2010
- 1506
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Inference of combinatorial Boolean rules of synergistic gene sets from cancer microarray datasetsPark, Inho / Lee, Kwang H. / Lee, Doheon et al. | 2010
- 1513
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LCE: a link-based cluster ensemble method for improved gene expression data analysisIam-on, Natthakan / Boongoen, Tossapon / Garrett, Simon et al. | 2010
- 1520
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FABIA: factor analysis for bicluster acquisitionHochreiter, Sepp / Bodenhofer, Ulrich / Heusel, Martin / Mayr, Andreas / Mitterecker, Andreas / Kasim, Adetayo / Khamiakova, Tatsiana / Van Sanden, Suzy / Lin, Dan / Talloen, Willem et al. | 2010
- 1528
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Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementationLiebermeister, Wolfram / Uhlendorf, Jannis / Klipp, Edda et al. | 2010
- 1535
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Deuteration distribution estimation with improved sequence coverage for HX/MS experimentsLou, Xinghua / Kirchner, Marc / Renard, Bernhard Y. / Köthe, Ullrich / Boppel, Sebastian / Graf, Christian / Lee, Chung-Tien / Steen, Judith A. J. / Steen, Hanno / Mayer, Matthias P. et al. | 2010
- 1542
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Computing biological functions using BioΨ, a formal description of biological processes based on elementary bricks of actionsPérès et al. | 2010
- 1542
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Computing biological functions using Bio{Psi}, a formal description of biological processes based on elementary bricks of actionsPérès, Sabine / Felicori, Liza / Rialle, Stéphanie / Jobard, Elodie / Molina, Franck et al. | 2010
- 1548
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Finding metabolic pathways using atom trackingHeath, Allison P. / Bennett, George N. / Kavraki, Lydia E. et al. | 2010
- 1556
-
A CoD-based reduction algorithm for designing stationary control policies on Boolean networksGhaffari, Noushin / Ivanov, Ivan / Qian, Xiaoning / Dougherty, Edward R. et al. | 2010
- 1564
-
HangOut: generating clean PSI-BLAST profiles for domains with long insertionsKim, Bong-Hyun / Cong, Qian / Grishin, Nick V. et al. | 2010
- 1566
-
TAPIR, a web server for the prediction of plant microRNA targets, including target mimicsBonnet, Eric / He, Ying / Billiau, Kenny / Van de Peer, Yves et al. | 2010
- 1569
-
DendroPy: a Python library for phylogenetic computingSukumaran, Jeet / Holder, Mark T. et al. | 2010
- 1572
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ConsensusClusterPlus: a class discovery tool with confidence assessments and item trackingWilkerson, Matthew D. / Hayes, D. Neil et al. | 2010
- 1574
-
PepC: proteomics software for identifying differentially expressed proteins based on spectral countingHeinecke, N.L. / Pratt, B.S. / Vaisar, T. / Becker, L. et al. | 2010
- 1576
-
NetRaVE: constructing dependency networks using sparse linear regressionPhatak, A. / Kiiveri, H. / Clemmensen, L.H. / Wilson, W.J. et al. | 2010
- i1
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Editorial| 2010
- i2
-
ISMB 2010 Organization| 2010
- i7
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Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixingCoelho, Luis Pedro / Peng, Tao / Murphy, Robert F. et al. | 2010
- i13
-
Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryosJaensch, Steffen / Decker, Markus / Hyman, Anthony A. / Myers, Eugene W. et al. | 2010
- i21
-
A soft kinetic data structure for lesion border detectionKockara, Sinan / Mete, Mutlu / Yip, Vincent / Lee, Brendan / Aydin, Kemal et al. | 2010
- i29
-
A spectral graph theoretic approach to quantification and calibration of collective morphological differences in cell imagesLin, Yu-Shi / Lin, Chung-Chih / Tsai, Yuh-Show / Ku, Tien-Chuan / Huang, Yi-Hung / Hsu, Chun-Nan et al. | 2010
- i38
-
Automatic reconstruction of 3D neuron structures using a graph-augmented deformable modelPeng, Hanchuan / Ruan, Zongcai / Atasoy, Deniz / Sternson, Scott et al. | 2010
- i47
-
SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH imagesPuniyani, Kriti / Faloutsos, Christos / Xing, Eric P. et al. | 2010
- i57
-
As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasetsSaalfeld, Stephan / Cardona, Albert / Hartenstein, Volker / Tomancák, Pavel et al. | 2010
- i64
-
Reconstruction of the neuromuscular junction connectomeSrinivasan, Ranga / Li, Qing / Zhou, Xiaobo / Lu, Ju / Lichtman, Jeff / Wong, Stephen T.C. et al. | 2010
- i71
-
Using semantic web rules to reason on an ontology of pseudogenesHolford, Matthew E. / Khurana, Ekta / Cheung, Kei-Hoi / Gerstein, Mark et al. | 2010
- i79
-
Assessing the functional coherence of gene sets with metrics based on the Gene Ontology graphRichards, Adam J. / Muller, Brian / Shotwell, Matthew / Cowart, L. Ashley / Rohrer, Bäerbel / Lu, Xinghua et al. | 2010
- i88
-
Semi-automated ontology generation within OBO-EditWächter, Thomas / Schroeder, Michael et al. | 2010
- i97
-
Sparse multitask regression for identifying common mechanism of response to therapeutic targetsZhang, Kai / Gray, Joe W. / Parvin, Bahram et al. | 2010
- i106
-
Robust unmixing of tumor states in array comparative genomic hybridization dataTolliver, David / Tsourakakis, Charalampos / Subramanian, Ayshwarya / Shackney, Stanley / Schwartz, Russell et al. | 2010
- i115
-
SUPERTRIPLETS: a triplet-based supertree approach to phylogenomicsRanwez, Vincent / Criscuolo, Alexis / Douzery, Emmanuel J.P. et al. | 2010
- i124
-
Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clustersvan Iersel, Leo / Kelk, Steven / Rupp, Regula / Huson, Daniel et al. | 2010
- i132
-
Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing dataStamatakis, Alexandros / Alachiotis, Nikolaos et al. | 2010
- i140
-
Close lower and upper bounds for the minimum reticulate network of multiple phylogenetic treesWu, Yufeng et al. | 2010
- i149
-
Inferring combinatorial association logic networks in multimodal genome-wide screensde Ridder, Jeroen / Gerrits, Alice / Bot, Jan / de Haan, Gerald / Reinders, Marcel / Wessels, Lodewyk et al. | 2010
- i158
-
Discovering transcriptional modules by Bayesian data integrationSavage, Richard S. / Ghahramani, Zoubin / Griffin, Jim E. / de la Cruz, Bernard J. / Wild, David L. et al. | 2010
- i168
-
Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimationYang, Rendong / Su, Zhen et al. | 2010
- i175
-
Estimating genome-wide IBD sharing from SNP data via an efficient hidden Markov model of LD with application to gene mappingBercovici, Sivan / Meek, Christopher / Wexler, Ydo / Geiger, Dan et al. | 2010
- i183
-
Optimal algorithms for haplotype assembly from whole-genome sequence dataHe, Dan / Choi, Arthur / Pipatsrisawat, Knot / Darwiche, Adnan / Eskin, Eleazar et al. | 2010
- i191
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Efficient identification of identical-by-descent status in pedigrees with many untyped individualsLi, Xin / Yin, Xiaolin / Li, Jing et al. | 2010
- i199
-
Efficient genome ancestry inference in complex pedigrees with inbreedingLiu, Eric Yi / Zhang, Qi / McMillan, Leonard / de Villena, Fernando Pardo-Manuel / Wang, Wei et al. | 2010
- i208
-
Multi-population GWA mapping via multi-task regularized regressionPuniyani, Kriti / Kim, Seyoung / Xing, Eric P. et al. | 2010
- i217
-
TEAM: efficient two-locus epistasis tests in human genome-wide association studyZhang, Xiang / Huang, Shunping / Zou, Fei / Wang, Wei et al. | 2010
- i228
-
Modularity and directionality in genetic interaction mapsJaimovich, Ariel / Rinott, Ruty / Schuldiner, Maya / Margalit, Hanah / Friedman, Nir et al. | 2010
- i237
-
Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGMVaske, Charles J. / Benz, Stephen C. / Sanborn, J. Zachary / Earl, Dent / Szeto, Christopher / Zhu, Jingchun / Haussler, David / Stuart, Joshua M. et al. | 2010
- i246
-
Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated frameworkYamanishi, Yoshihiro / Kotera, Masaaki / Kanehisa, Minoru / Goto, Susumu et al. | 2010
- i255
-
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network modelYizhak, Keren / Benyamini, Tomer / Liebermeister, Wolfram / Ruppin, Eytan / Shlomi, Tomer et al. | 2010
- i261
-
A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density mapsZhang, Shihua / Vasishtan, Daven / Xu, Min / Topf, Maya / Alber, Frank et al. | 2010
- i269
-
Markov dynamic models for long-timescale protein motionChiang, Tsung-Han / Hsu, David / Latombe, Jean-Claude et al. | 2010
- i278
-
Thermodynamics of RNA structures by Wang-Landau samplingLou, Feng / Clote, Peter et al. | 2010
- i287
-
Recognition of beta-structural motifs using hidden Markov models trained with simulated evolutionKumar, Anoop / Cowen, Lenore et al. | 2010
- i294
-
Low-homology protein threadingPeng, Jian / Xu, Jinbo et al. | 2010
- i301
-
MOTIF-EM: an automated computational tool for identifying conserved regions in CryoEM structuresSaha, Mitul / Levitt, Michael / Chiu, Wah et al. | 2010
- i310
-
Fragment-free approach to protein folding using conditional neural fieldsZhao, Feng / Peng, Jian / Xu, Jinbo et al. | 2010
- i318
-
A statistical method for the detection of variants from next-generation resequencing of DNA poolsBansal, Vikas et al. | 2010
- i325
-
Model-based detection of alternative splicing signalsBarash, Yoseph / Blencowe, Benjamin J. / Frey, Brendan J. et al. | 2010
- i334
-
A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing dataChen, Xiaoyu / Hoffman, Michael M. / Bilmes, Jeff A. / Hesselberth, Jay R. / Noble, William S. et al. | 2010
- i343
-
VARiD: A variation detection framework for color-space and letter-space platformsDalca, Adrian V. / Rumble, Stephen M. / Levy, Samuel / Brudno, Michael et al. | 2010
- i350
-
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discoveryHormozdiari, Fereydoun / Hajirasouliha, Iman / Dao, Phuong / Hach, Faraz / Yorukoglu, Deniz / Alkan, Can / Eichler, Evan E. / Sahinalp, S. Cenk et al. | 2010
- i358
-
TRStalker: an efficient heuristic for finding fuzzy tandem repeatsPellegrini, Marco / Renda, M. Elena / Vecchio, Alessio et al. | 2010
- i367
-
Efficient construction of an assembly string graph using the FM-indexSimpson, Jared T. / Durbin, Richard et al. | 2010
- i374
-
PathText: a text mining integrator for biological pathway visualizationsKemper, Brian / Matsuzaki, Takuya / Matsuoka, Yukiko / Tsuruoka, Yoshimasa / Kitano, Hiroaki / Ananiadou, Sophia / Tsujii, Jun'ichi et al. | 2010
- i382
-
Complex event extraction at PubMed scaleBjörne, Jari / Ginter, Filip / Pyysalo, Sampo / Tsujii, Jun'ichi / Salakoski, Tapio et al. | 2010
- i391
-
Multivariate multi-way analysis of multi-source dataHuopaniemi, Ilkka / Suvitaival, Tommi / Nikkilä, Janne / Oresic, Matej / Kaski, Samuel et al. | 2010
- i399
-
Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rateYe, Ding / Fu, Yan / Sun, Rui-Xiang / Wang, Hai-Peng / Yuan, Zuo-Fei / Chi, Hao / He, Si-Min et al. | 2010
- i407
-
Author Index| 2010