bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby (English)
- New search for: Etherington, Graham J.
- New search for: Ramirez-Gonzalez, Ricardo H.
- New search for: MacLean, Dan
- New search for: Etherington, Graham J.
- New search for: Ramirez-Gonzalez, Ricardo H.
- New search for: MacLean, Dan
In:
Bioinformatics
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31
, 15
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2565-
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2015
- Article (Journal) / Electronic Resource
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Title:bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby
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Contributors:Etherington, Graham J. ( author ) / Ramirez-Gonzalez, Ricardo H. ( author ) / MacLean, Dan ( author )
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Published in:Bioinformatics ; 31, 15 ; 2565-
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Publisher:
- New search for: Oxford University Press
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Publication date:2015-08-01
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 31, Issue 15
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 2421
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Three minimal sequences found in Ebola virus genomes and absent from human DNASilva, Raquel M. / Pratas, Diogo / Castro, Luísa / Pinho, Armando J. / Ferreira, Paulo J. S. G. et al. | 2015
- 2426
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Learning chromatin states with factorized information criteriaHamada, Michiaki / Ono, Yukiteru / Fujimaki, Ryohei / Asai, Kiyoshi et al. | 2015
- 2434
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DISSCO: direct imputation of summary statistics allowing covariatesXu, Zheng / Duan, Qing / Yan, Song / Chen, Wei / Li, Mingyao / Lange, Ethan / Li, Yun et al. | 2015
- 2443
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MEDUSA: a multi-draft based scaffolderBosi, Emanuele / Donati, Beatrice / Galardini, Marco / Brunetti, Sara / Sagot, Marie-France / Lió, Pietro / Crescenzi, Pierluigi / Fani, Renato / Fondi, Marco et al. | 2015
- 2452
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DEOD: uncovering dominant effects of cancer-driver genes based on a partial covariance selection methodAmgalan, Bayarbaatar / Lee, Hyunju et al. | 2015
- 2461
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Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVAKelly, Brendan J. / Gross, Robert / Bittinger, Kyle / Sherrill-Mix, Scott / Lewis, James D. / Collman, Ronald G. / Bushman, Frederic D. / Li, Hongzhe et al. | 2015
- 2469
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A statistical physics perspective on alignment-independent protein sequence comparisonChattopadhyay, Amit K. / Nasiev, Diar / Flower, Darren R. et al. | 2015
- 2475
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HAlign: Fast multiple similar DNA/RNA sequence alignment based on the centre star strategyZou, Quan / Hu, Qinghua / Guo, Maozu / Wang, Guohua et al. | 2015
- 2482
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Halvade: scalable sequence analysis with MapReduceDecap, Dries / Reumers, Joke / Herzeel, Charlotte / Costanza, Pascal / Fostier, Jan et al. | 2015
- 2489
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SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristicsWill, Sebastian / Otto, Christina / Miladi, Milad / Möhl, Mathias / Backofen, Rolf et al. | 2015
- 2497
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Assessing allele-specific expression across multiple tissues from RNA-seq read dataPirinen, Matti / Lappalainen, Tuuli / Zaitlen, Noah A. / GTEx Consortium, / Dermitzakis, Emmanouil T. / Donnelly, Peter / McCarthy, Mark I. / Rivas, Manuel A. et al. | 2015
- 2505
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Identification of a small set of plasma signalling proteins using neural network for prediction of Alzheimer's diseaseAgarwal, Swapna / Ghanty, Pradip / Pal, Nikhil R. et al. | 2015
- 2514
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Computational modeling of the expansion of human cord blood CD133+ hematopoietic stem/progenitor cells with different cytokine combinationsGullo, Francesca / van der Garde, Mark / Russo, Giulia / Pennisi, Marzio / Motta, Santo / Pappalardo, Francesco / Watt, Suzanne et al. | 2015
- 2523
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Global optimization-based inference of chemogenomic features from drug-target interactionsZu, Songpeng / Chen, Ting / Li, Shao et al. | 2015
- 2530
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Outlier detection at the transcriptome-proteome interfaceGunawardana, Yawwani / Fujiwara, Shuhei / Takeda, Akiko / Woo, Jeongmin / Woelk, Christopher / Niranjan, Mahesan et al. | 2015
- 2537
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Regulatory network inferred using expression data of small sample size: application and validation in erythroid systemZhu, Fan / Shi, Lihong / Engel, James Douglas / Guan, Yuanfang et al. | 2015
- 2545
-
Using neighborhood cohesiveness to infer interactions between protein domainsSegura, Joan / Sorzano, C. O. S. / Cuenca-Alba, Jesus / Aloy, Patrick / Carazo, J. M. et al. | 2015
- 2553
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Overlap and diversity in antimicrobial peptide databases: compiling a non-redundant set of sequencesAguilera-Mendoza, Longendri / Marrero-Ponce, Yovani / Tellez-Ibarra, Roberto / Llorente-Quesada, Monica T. / Salgado, Jesús / Barigye, Stephen J. / Liu, Jun et al. | 2015
- 2560
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4DGenome: a comprehensive database of chromatin interactionsTeng, Li / He, Bing / Wang, Jiahui / Tan, Kai et al. | 2015
- 2565
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bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in RubyEtherington, Graham J. / Ramirez-Gonzalez, Ricardo H. / MacLean, Dan et al. | 2015
- 2568
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DREAM: a webserver for the identification of editing sites in mature miRNAs using deep sequencing dataAlon, Shahar / Erew, Muhammad / Eisenberg, Eli et al. | 2015
- 2571
-
MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain informationBalech, Bachir / Vicario, Saverio / Donvito, Giacinto / Monaco, Alfonso / Notarangelo, Pasquale / Pesole, Graziano et al. | 2015
- 2574
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KeBABS: an R package for kernel-based analysis of biological sequencesPalme, Johannes / Hochreiter, Sepp / Bodenhofer, Ulrich et al. | 2015
- 2577
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ExaML version 3: a tool for phylogenomic analyses on supercomputersKozlov, Alexey M. / Aberer, Andre J. / Stamatakis, Alexandros et al. | 2015
- 2580
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Solubis: optimize your proteinDe Baets, Greet / Van Durme, Joost / van der Kant, Rob / Schymkowitz, Joost / Rousseau, Frederic et al. | 2015
- 2583
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do_x3dna: a tool to analyze structural fluctuations of dsDNA or dsRNA from molecular dynamics simulationsKumar, Rajendra / Grubmüller, Helmut et al. | 2015
- 2586
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RiboTools: a Galaxy toolbox for qualitative ribosome profiling analysisLegendre, Rachel / Baudin-Baillieu, Agnès / Hatin, Isabelle / Namy, Olivier et al. | 2015
- 2589
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edgeRun: an R package for sensitive, functionally relevant differential expression discovery using an unconditional exact testDimont, Emmanuel / Shi, Jiantao / Kirchner, Rory / Hide, Winston et al. | 2015
- 2591
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EW_dmGWAS: edge-weighted dense module search for genome-wide association studies and gene expression profilesWang, Quan / Yu, Hui / Zhao, Zhongming / Jia, Peilin et al. | 2015
- 2595
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PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in RGrau, Jan / Grosse, Ivo / Keilwagen, Jens et al. | 2015
- 2598
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ASBench: benchmarking sets for allosteric discoveryHuang, Wenkang / Wang, Guanqiao / Shen, Qiancheng / Liu, Xinyi / Lu, Shaoyong / Geng, Lv / Huang, Zhimin / Zhang, Jian et al. | 2015