Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams (English)
- New search for: Kerpedjiev, Peter
- New search for: Hammer, Stefan
- New search for: Hofacker, Ivo L.
- New search for: Kerpedjiev, Peter
- New search for: Hammer, Stefan
- New search for: Hofacker, Ivo L.
In:
Bioinformatics
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31
, 20
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3377-
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2015
- Article (Journal) / Electronic Resource
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Title:Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams
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Contributors:
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Published in:Bioinformatics ; 31, 20 ; 3377-
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Publisher:
- New search for: Oxford University Press
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Publication date:2015-10-15
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 31, Issue 20
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 3241
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Data Safe Havens in health research and healthcareBurton, Paul R. / Murtagh, Madeleine J. / Boyd, Andy / Williams, James B. / Dove, Edward S. / Wallace, Susan E. / Tassé, Anne-Marie / Little, Julian / Chisholm, Rex L. / Gaye, Amadou et al. | 2015
- 3249
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A note on the false discovery rate of novel peptides in proteogenomicsZhang, Kun / Fu, Yan / Zeng, Wen-Feng / He, Kun / Chi, Hao / Liu, Chao / Li, Yan-Chang / Gao, Yuan / Xu, Ping / He, Si-Min et al. | 2015
- 3254
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Quantitative frame analysis and the annotation of GC-rich (and other) prokaryotic genomes. An application to Anaeromyxobacter dehalogenansOden, Steve / Brocchieri, Luciano et al. | 2015
- 3262
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Assembling short reads from jumping libraries with large insert sizesVasilinetc, Irina / Prjibelski, Andrey D. / Gurevich, Alexey / Korobeynikov, Anton / Pevzner, Pavel A. et al. | 2015
- 3269
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TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteinsSavojardo, Castrense / Martelli, Pier Luigi / Fariselli, Piero / Casadio, Rita et al. | 2015
- 3276
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LFQC: a lossless compression algorithm for FASTQ filesNicolae, Marius / Pathak, Sudipta / Rajasekaran, Sanguthevar et al. | 2015
- 3282
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An efficient Bayesian inference framework for coalescent-based nonparametric phylodynamicsLan, Shiwei / Palacios, Julia A. / Karcher, Michael / Minin, Vladimir N. / Shahbaba, Babak et al. | 2015
- 3290
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biRte: Bayesian inference of context-specific regulator activities and transcriptional networksFröhlich, Holger et al. | 2015
- 3299
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Fast-SL: an efficient algorithm to identify synthetic lethal sets in metabolic networksPratapa, Aditya / Balachandran, Shankar / Raman, Karthik et al. | 2015
- 3306
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TENET: topological feature-based target characterization in signalling networksChua, Huey Eng / Bhowmick, Sourav S. / Tucker-Kellogg, Lisa / Dewey, C. Forbes et al. | 2015
- 3315
-
libRoadRunner: a high performance SBML simulation and analysis librarySomogyi, Endre T. / Bouteiller, Jean-Marie / Glazier, James A. / König, Matthias / Medley, J. Kyle / Swat, Maciej H. / Sauro, Herbert M. et al. | 2015
- 3322
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Investigating microbial co-occurrence patterns based on metagenomic compositional dataBan, Yuguang / An, Lingling / Jiang, Hongmei et al. | 2015
- 3330
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NCC-AUC: an AUC optimization method to identify multi-biomarker panel for cancer prognosis from genomic and clinical dataZou, Meng / Liu, Zhaoqi / Zhang, Xiang-Sun / Wang, Yong et al. | 2015
- 3339
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IBiSS, a versatile and interactive tool for integrated sequence and 3D structure analysis of large macromolecular complexesBeinsteiner, Brice / Michalon, Jonathan / Klaholz, Bruno P. et al. | 2015
- 3345
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MetaPathways v2.5: quantitative functional, taxonomic and usability improvementsKonwar, Kishori M. / Hanson, Niels W. / Bhatia, Maya P. / Kim, Dongjae / Wu, Shang-Ju / Hahn, Aria S. / Morgan-Lang, Connor / Cheung, Hiu Kan / Hallam, Steven J. et al. | 2015
- 3348
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GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applicationsLaird, Matthew R. / Langille, Morgan G.I. / Brinkman, Fiona S.L. et al. | 2015
- 3350
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Bandage: interactive visualization of de novo genome assembliesWick, Ryan R. / Schultz, Mark B. / Zobel, Justin / Holt, Kathryn E. et al. | 2015
- 3353
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atSNP: transcription factor binding affinity testing for regulatory SNP detectionZuo, Chandler / Shin, Sunyoung / Keles, Sündüz et al. | 2015
- 3356
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Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing dataGupta, Namita T. / Vander Heiden, Jason A. / Uduman, Mohamed / Gadala-Maria, Daniel / Yaari, Gur / Kleinstein, Steven H. et al. | 2015
- 3359
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IBS: an illustrator for the presentation and visualization of biological sequencesLiu, Wenzhong / Xie, Yubin / Ma, Jiyong / Luo, Xiaotong / Nie, Peng / Zuo, Zhixiang / Lahrmann, Urs / Zhao, Qi / Zheng, Yueyuan / Zhao, Yong et al. | 2015
- 3362
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PPUS: a web server to predict PUS-specific pseudouridine sitesLi, Yan-Hui / Zhang, Gaigai / Cui, Qinghua et al. | 2015
- 3365
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Chimira: analysis of small RNA sequencing data and microRNA modificationsVitsios, Dimitrios M. / Enright, Anton J. et al. | 2015
- 3368
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MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiomeNayfach, Stephen / Fischbach, Michael A. / Pollard, Katherine S. et al. | 2015
- 3371
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damidseq_pipeline: an automated pipeline for processing DamID sequencing datasetsMarshall, Owen J. / Brand, Andrea H. et al. | 2015
- 3374
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FoldNucleus: web server for the prediction of RNA and protein folding nuclei from their 3D structuresPereyaslavets, Leonid B. / Sokolovsky, Igor V. / Galzitskaya, Oxana V. et al. | 2015
- 3377
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Forna (force-directed RNA): Simple and effective online RNA secondary structure diagramsKerpedjiev, Peter / Hammer, Stefan / Hofacker, Ivo L. et al. | 2015
- 3380
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Sincell: an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seqJuliá, Miguel / Telenti, Amalio / Rausell, Antonio et al. | 2015
- 3383
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JSBML 1.0: providing a smorgasbord of options to encode systems biology modelsRodriguez, Nicolas / Thomas, Alex / Watanabe, Leandro / Vazirabad, Ibrahim Y. / Kofia, Victor / Gómez, Harold F. / Mittag, Florian / Matthes, Jakob / Rudolph, Jan / Wrzodek, Finja et al. | 2015
- 3387
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REDEMPTION: reduced dimension ensemble modeling and parameter estimationLiu, Yang / Manesso, Erica / Gunawan, Rudiyanto et al. | 2015
- 3390
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Hyperscape: visualization for complex biological networksCromar, Graham L. / Zhao, Anthony / Yang, Alex / Parkinson, John et al. | 2015
- 3392
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Rchemcpp: a web service for structural analoging in ChEMBL, Drugbank and the Connectivity MapKlambauer, Günter / Wischenbart, Martin / Mahr, Michael / Unterthiner, Thomas / Mayr, Andreas / Hochreiter, Sepp et al. | 2015
- 3395
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AmyLoad: website dedicated to amyloidogenic protein fragmentsWozniak, Pawel P. / Kotulska, Malgorzata et al. | 2015
- 3398
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Real-time multi-view deconvolutionSchmid, Benjamin / Huisken, Jan et al. | 2015