The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation (English)
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In:
Journal of Biomedical Semantics
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7
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1-12
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2016
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ISSN:
- Article (Journal) / Electronic Resource
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Title:The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation
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Contributors:Hogan, William R. ( author ) / Wagner, Michael M. ( author ) / Brochhausen, Mathias ( author ) / Levander, John ( author ) / Brown, Shawn T. ( author ) / Millett, Nicholas ( author ) / DePasse, Jay ( author ) / Hanna, Josh ( author )
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Published in:Journal of Biomedical Semantics ; 7, 1 ; 1-12
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Publisher:
- New search for: BioMed Central
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Place of publication:London
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Publication date:2016-08-18
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Size:12 pages
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Keywords:
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Source:
Table of contents – Volume 7, Issue 1
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
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TrhOnt: building an ontology to assist rehabilitation processesBerges, Idoia / Antón, David / Bermúdez, Jesús / Goñi, Alfredo / Illarramendi, Arantza et al. | 2016
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miRiaD: A Text Mining Tool for Detecting Associations of microRNAs with DiseasesGupta, Samir / Ross, Karen E. / Tudor, Catalina O. / Wu, Cathy H. / Schmidt, Carl J. / Vijay-Shanker, K. et al. | 2016
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Erratum to: Extracting drug-enzyme relation from literature as evidence for drug drug interactionZhang, Yaoyun / Wu, Heng-Yi / Du, Jingcheng / Xu, Jun / Wang, Jingqi / Tao, Cui / Li, Lang / Xu, Hua et al. | 2016
- 1
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Dione: An OWL representation of ICD-10-CM for classifying patients’ diseasesRoldán-García, María del Mar / García-Godoy, María Jesús / Aldana-Montes, José F. et al. | 2016
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Trivalent influenza vaccine adverse symptoms analysis based on MedDRA terminology using VAERS data in 2011Du, Jingcheng / Cai, Yi / Chen, Yong / Tao, Cui et al. | 2016
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Representing vision and blindnessRay, Patrick L. / Cox, Alexander P. / Jensen, Mark / Allen, Travis / Duncan, William / Diehl, Alexander D. et al. | 2016
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COMODI: an ontology to characterise differences in versions of computational models in biologyScharm, Martin / Waltemath, Dagmar / Mendes, Pedro / Wolkenhauer, Olaf et al. | 2016
- 1
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A corpus of potentially contradictory research claims from cardiovascular research abstractsAlamri, Abdulaziz / Stevenson, Mark et al. | 2016
- 1
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A drug target slim: using gene ontology and gene ontology annotations to navigate protein-ligand target space in ChEMBLMutowo, Prudence / Bento, A. Patrícia / Dedman, Nathan / Gaulton, Anna / Hersey, Anne / Lomax, Jane / Overington, John P. et al. | 2016
- 1
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Modularising ontology and designing inference patterns to personalise health condition assessment: the case of obesitySojic, Aleksandra / Terkaj, Walter / Contini, Giorgia / Sacco, Marco et al. | 2016
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Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validationSarntivijai, Sirarat / Vasant, Drashtti / Jupp, Simon / Saunders, Gary / Bento, A. Patrícia / Gonzalez, Daniel / Betts, Joanna / Hasan, Samiul / Koscielny, Gautier / Dunham, Ian et al. | 2016
- 1
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Extracting drug-enzyme relation from literature as evidence for drug drug interactionZhang, Yaoyun / Wu, Heng-Yi / Du, Jingcheng / Xu, Jun / Wang, Jingqi / Tao, Cui / Li, Lang / Xu, Hua et al. | 2016
- 1
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Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standardsJiang, Guoqian / Evans, Julie / Endle, Cory M. / Solbrig, Harold R. / Chute, Christopher G. et al. | 2016
- 1
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Extending gene ontology in the context of extracellular RNA and vesicle communicationCheung, Kei-Hoi / Keerthikumar, Shivakumar / Roncaglia, Paola / Subramanian, Sai Lakshmi / Roth, Matthew E. / Samuel, Monisha / Anand, Sushma / Gangoda, Lahiru / Gould, Stephen / Alexander, Roger et al. | 2016
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Generation of open biomedical datasets through ontology-driven transformation and integration processesCarmen Legaz-García, María del / Miñarro-Giménez, José Antonio / Menárguez-Tortosa, Marcos / Fernández-Breis, Jesualdo Tomás et al. | 2016
- 1
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Large scale biomedical texts classification: a kNN and an ESA-based approachesDramé, Khadim / Mougin, Fleur / Diallo, Gayo et al. | 2016
- 1
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Diagnosis, misdiagnosis, lucky guess, hearsay, and more: an ontological analysisHogan, William R. / Ceusters, Werner et al. | 2016
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Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognitionFunk, Christopher S. / Cohen, K. Bretonnel / Hunter, Lawrence E. / Verspoor, Karin M. et al. | 2016
- 1
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The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysisZheng, Jie / Harris, Marcelline R. / Masci, Anna Maria / Lin, Yu / Hero, Alfred / Smith, Barry / He, Yongqun et al. | 2016
- 1
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TNM-O: ontology support for staging of malignant tumoursBoeker, Martin / França, Fábio / Bronsert, Peter / Schulz, Stefan et al. | 2016
- 1
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The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plantsHoehndorf, Robert / Alshahrani, Mona / Gkoutos, Georgios V. / Gosline, George / Groom, Quentin / Hamann, Thomas / Kattge, Jens / de Oliveira, Sylvia Mota / Schmidt, Marco / Sierra, Soraya et al. | 2016
- 1
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Thematic issue of the Second combined Bio-ontologies and Phenotypes WorkshopVerspoor, Karin / Oellrich, Anika / Collier, Nigel / Groza, Tudor / Rocca-Serra, Philippe / Soldatova, Larisa / Dumontier, Michel / Shah, Nigam et al. | 2016
- 1
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Vaccine and Drug Ontology Studies (VDOS 2014)Tao, Cui / He, Yongqun / Arabandi, Sivaram et al. | 2016
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Reporting phenotypes in mouse models when considering body size as a potential confounderOellrich, Anika / Meehan, Terrence F. / Parkinson, Helen / Sarntivijai, Sirarat / White, Jacqueline K. / Karp, Natasha A. et al. | 2016
- 1
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Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteinsYokochi, Masashi / Kobayashi, Naohiro / Ulrich, Eldon L. / Kinjo, Akira R. / Iwata, Takeshi / Ioannidis, Yannis E. / Livny, Miron / Markley, John L. / Nakamura, Haruki / Kojima, Chojiro et al. | 2016
- 1
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PhenoImageShare: an image annotation and query infrastructureAdebayo, Solomon / McLeod, Kenneth / Tudose, Ilinca / Osumi-Sutherland, David / Burdett, Tony / Baldock, Richard / Burger, Albert / Parkinson, Helen et al. | 2016
- 1
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The Orthology Ontology: development and applicationsFernández-Breis, Jesualdo Tomás / Chiba, Hirokazu / Legaz-García, María del Carmen / Uchiyama, Ikuo et al. | 2016
- 1
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NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's diseaseIyappan, Anandhi / Kawalia, Shweta Bagewadi / Raschka, Tamara / Hofmann-Apitius, Martin / Senger, Philipp et al. | 2016
- 1
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Towards exergaming commons: composing the exergame ontology for publishing open game dataBamparopoulos, Giorgos / Konstantinidis, Evdokimos / Bratsas, Charalampos / Bamidis, Panagiotis D. et al. | 2016
- 1
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Extracting a stroke phenotype risk factor from Veteran Health Administration clinical reports: an information content analysisMowery, Danielle L. / Chapman, Brian E. / Conway, Mike / South, Brett R. / Madden, Erin / Keyhani, Salomeh / Chapman, Wendy W. et al. | 2016
- 1
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OBIB-a novel ontology for biobankingBrochhausen, Mathias / Zheng, Jie / Birtwell, David / Williams, Heather / Masci, Anna Maria / Ellis, Helena Judge / Stoeckert, Christian J. Jr. et al. | 2016
- 1
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Ontology-based collection, representation and analysis of drug-associated neuropathy adverse eventsGuo, Abra / Racz, Rebecca / Hur, Junguk / Lin, Yu / Xiang, Zuoshuang / Zhao, Lili / Rinder, Jordan / Jiang, Guoqian / Zhu, Qian / He, Yongqun et al. | 2016
- 1
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The early bird catches the term: combining twitter and news data for event detection and situational awarenessThapen, Nicholas / Simmie, Donal / Hankin, Chris et al. | 2016
- 1
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Interoperability between phenotypes in research and healthcare terminologies—Investigating partial mappings between HPO and SNOMED CTDhombres, Ferdinand / Bodenreider, Olivier et al. | 2016
- 1
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The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biologyHuang, Jingshan / Eilbeck, Karen / Smith, Barry / Blake, Judith A. / Dou, Dejing / Huang, Weili / Natale, Darren A. / Ruttenberg, Alan / Huan, Jun / Zimmermann, Michael T. et al. | 2016
- 1
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Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classificationMehryary, Farrokh / Kaewphan, Suwisa / Hakala, Kai / Ginter, Filip et al. | 2016
- 1
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Erratum to: Towards exergaming commons: composing the exergame ontology for publishing open game dataBamparopoulos, Giorgos / Konstantinidis, Evdokimos / Bratsas, Charalampos / Bamidis, Panagiotis D. et al. | 2016
- 1
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Normalizing acronyms and abbreviations to aid patient understanding of clinical texts: ShARe/CLEF eHealth Challenge 2013, Task 2Mowery, Danielle L. / South, Brett R. / Christensen, Lee / Leng, Jianwei / Peltonen, Laura-Maria / Salanterä, Sanna / Suominen, Hanna / Martinez, David / Velupillai, Sumithra / Elhadad, Noémie et al. | 2016
- 1
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Knowledge Author: facilitating user-driven, domain content development to support clinical information extractionScuba, William / Tharp, Melissa / Mowery, Danielle / Tseytlin, Eugene / Liu, Yang / Drews, Frank A. / Chapman, Wendy W. et al. | 2016
- 1
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The ontology of medically related social entities: recent developmentsHicks, Amanda / Hanna, Josh / Welch, Daniel / Brochhausen, Mathias / Hogan, William R. et al. | 2016
- 1
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Towards natural language question generation for the validation of ontologies and mappingsBen Abacha, Asma / Dos Reis, Julio Cesar / Mrabet, Yassine / Pruski, Cédric / Da Silveira, Marcos et al. | 2016
- 1
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Developing a web-based SKOS editorConway, Mike / Khojoyan, Artem / Fana, Fariba / Scuba, William / Castine, Melissa / Mowery, Danielle / Chapman, Wendy / Jupp, Simon et al. | 2016
- 1
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An accurate and precise representation of drug ingredientsHanna, Josh / Bian, Jiang / Hogan, William R. et al. | 2016
- 1
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Functional coherence metrics in protein familiesBastos, Hugo P. / Sousa, Lisete / Clarke, Luka A. / Couto, Francisco M. et al. | 2016
- 1
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Using AberOWL for fast and scalable reasoning over BioPortal ontologiesSlater, Luke / Gkoutos, Georgios V. / Schofield, Paul N. / Hoehndorf, Robert et al. | 2016
- 1
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The Cell Ontology 2016: enhanced content, modularization, and ontology interoperabilityDiehl, Alexander D. / Meehan, Terrence F. / Bradford, Yvonne M. / Brush, Matthew H. / Dahdul, Wasila M. / Dougall, David S. / He, Yongqun / Osumi-Sutherland, David / Ruttenberg, Alan / Sarntivijai, Sirarat et al. | 2016
- 1
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Information and organization in public health institutes: an ontology-based modeling of the entities in the reception-analysis-report phasesPozza, Giandomenico / Borgo, Stefano / Oltramari, Alessandro / Contalbrigo, Laura / Marangon, Stefano et al. | 2016
- 1
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Can SNOMED CT be squeezed without losing its shape?López-García, Pablo / Schulz, Stefan et al. | 2016
- 1
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An ontology for major histocompatibility restrictionVita, Randi / Overton, James A. / Seymour, Emily / Sidney, John / Kaufman, Jim / Tallmadge, Rebecca L. / Ellis, Shirley / Hammond, John / Butcher, Geoff W. / Sette, Alessandro et al. | 2016
- 1
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Webulous and the Webulous Google Add-On - a web service and application for ontology building from templatesJupp, Simon / Burdett, Tony / Welter, Danielle / Sarntivijai, Sirarat / Parkinson, Helen / Malone, James et al. | 2016
- 1
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The BioHub Knowledge Base: Ontology and Repository for Sustainable BiosourcingRead, Warren J. / Demetriou, George / Nenadic, Goran / Ruddock, Noel / Stevens, Robert / Winter, Jerry et al. | 2016
- 1
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Supporting the analysis of ontology evolution processes through the combination of static and dynamic scaling functions in OQuaREDuque-Ramos, Astrid / Quesada-Martínez, Manuel / Iniesta-Moreno, Miguela / Fernández-Breis, Jesualdo Tomás / Stevens, Robert et al. | 2016
- 1
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Expansion of medical vocabularies using distributional semantics on Japanese patient blogsAhltorp, Magnus / Skeppstedt, Maria / Kitajima, Shiho / Henriksson, Aron / Rzepka, Rafal / Araki, Kenji et al. | 2016
- 1
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tESA: a distributional measure for calculating semantic relatednessRybinski, Maciej / Aldana-Montes, José Francisco et al. | 2016
- 1
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VICO: Ontology-based representation and integrative analysis of Vaccination Informed Consent formsLin, Yu / Zheng, Jie / He, Yongqun et al. | 2016
- 1
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MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptionsBlank, Carrine E. / Cui, Hong / Moore, Lisa R. / Walls, Ramona L. et al. | 2016
- 1
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OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction dataHuang, Jingshan / Gutierrez, Fernando / Strachan, Harrison J. / Dou, Dejing / Huang, Weili / Smith, Barry / Blake, Judith A. / Eilbeck, Karen / Natale, Darren A. / Lin, Yu et al. | 2016
- 1
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The cellular microscopy phenotype ontologyJupp, Simon / Malone, James / Burdett, Tony / Heriche, Jean-Karim / Williams, Eleanor / Ellenberg, Jan / Parkinson, Helen / Rustici, Gabriella et al. | 2016
- 1
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Making adjustments to event annotations for improved biological event extractionBaek, Seung-Cheol / Park, Jong C. et al. | 2016
- 1
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The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperationButtigieg, Pier Luigi / Pafilis, Evangelos / Lewis, Suzanna E. / Schildhauer, Mark P. / Walls, Ramona L. / Mungall, Christopher J. et al. | 2016
- 1
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Inferring gene-to-phenotype and gene-to-disease relationships at Mouse Genome Informatics: challenges and solutionsBello, Susan M. / Eppig, Janan T. / the MGI Software Group et al. | 2016
- 1
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Active learning for ontological event extraction incorporating named entity recognition and unknown word handlingHan, Xu / Kim, Jung-jae / Kwoh, Chee Keong et al. | 2016
- 1
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FALDO: a semantic standard for describing the location of nucleotide and protein feature annotationBolleman, Jerven T. / Mungall, Christopher J. / Strozzi, Francesco / Baran, Joachim / Dumontier, Michel / Bonnal, Raoul J. P. / Buels, Robert / Hoehndorf, Robert / Fujisawa, Takatomo / Katayama, Toshiaki et al. | 2016
- 1
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The Proteasix OntologyArguello Casteleiro, Mercedes / Klein, Julie / Stevens, Robert et al. | 2016
- 1
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Overlap in drug-disease associations between clinical practice guidelines and drug structured product label indicationsLeung, Tiffany I. / Dumontier, Michel et al. | 2016
- 1
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DermO; an ontology for the description of dermatologic diseaseFisher, Hannah M. / Hoehndorf, Robert / Bazelato, Bruno S. / Dadras, Soheil S. / King, Lloyd E. Jr. / Gkoutos, Georgios V. / Sundberg, John P. / Schofield, Paul N. et al. | 2016
- 1
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The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulationHogan, William R. / Wagner, Michael M. / Brochhausen, Mathias / Levander, John / Brown, Shawn T. / Millett, Nicholas / DePasse, Jay / Hanna, Josh et al. | 2016