HIT’nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time (English)
- New search for: Shrestha, Raunak
- New search for: Hodzic, Ermin
- New search for: Yeung, Jake
- New search for: Wang, Kendric
- New search for: Sauerwald, Thomas
- New search for: Dao, Phuong
- New search for: Anderson, Shawn
- New search for: Beltran, Himisha
- New search for: Rubin, Mark A.
- New search for: Collins, Colin C.
- New search for: Haffari, Gholamreza
- New search for: Sahinalp, S. Cenk
- New search for: Shrestha, Raunak
- New search for: Hodzic, Ermin
- New search for: Yeung, Jake
- New search for: Wang, Kendric
- New search for: Sauerwald, Thomas
- New search for: Dao, Phuong
- New search for: Anderson, Shawn
- New search for: Beltran, Himisha
- New search for: Rubin, Mark A.
- New search for: Collins, Colin C.
- New search for: Haffari, Gholamreza
- New search for: Sahinalp, S. Cenk
In:
Research in Computational Molecular Biology
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293-306
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2014
- Article/Chapter (Book) / Electronic Resource
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Title:HIT’nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time
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Contributors:Shrestha, Raunak ( author ) / Hodzic, Ermin ( author ) / Yeung, Jake ( author ) / Wang, Kendric ( author ) / Sauerwald, Thomas ( author ) / Dao, Phuong ( author ) / Anderson, Shawn ( author ) / Beltran, Himisha ( author ) / Rubin, Mark A. ( author ) / Collins, Colin C. ( author )
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Published in:Lecture Notes in Computer Science ; 8394 ; 293-306
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Publisher:
- New search for: Springer International Publishing
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Place of publication:Cham
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Publication date:2014-01-01
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Size:14 pages
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ISBN:
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ISSN:
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DOI:
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Type of media:Article/Chapter (Book)
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Type of material:Electronic Resource
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Language:English
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Keywords:
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Source:
Table of contents eBook
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1
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Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype TractsAguiar, Derek / Morrow, Eric / Istrail, Sorin et al. | 2014
- 18
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HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS DataBerger, Emily / Yorukoglu, Deniz / Peng, Jian / Berger, Bonnie et al. | 2014
- 20
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Changepoint Analysis for Efficient Variant CallingBloniarz, Adam / Talwalkar, Ameet / Terhorst, Jonathan / Jordan, Michael I. / Patterson, David / Yu, Bin / Song, Yun S. et al. | 2014
- 35
-
On the Representation of de Bruijn GraphsChikhi, Rayan / Limasset, Antoine / Jackman, Shaun / Simpson, Jared T. / Medvedev, Paul et al. | 2014
- 56
-
Exact Learning of RNA Energy Parameters from StructureChitsaz, Hamidreza / Aminisharifabad, Mohammad et al. | 2014
- 69
-
An Alignment-Free Regression Approach for Estimating Allele-Specific Expression Using RNA-Seq DataFu, Chen-Ping / Jojic, Vladimir / McMillan, Leonard et al. | 2014
- 85
-
The Generating Function Approach for Peptide Identification in Spectral NetworksGuthals, Adrian / Boucher, Christina / Bandeira, Nuno et al. | 2014
- 100
-
Decoding Coalescent Hidden Markov Models in Linear TimeHarris, Kelley / Sheehan, Sara / Kamm, John A. / Song, Yun S. et al. | 2014
- 115
-
AptaCluster – A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its ApplicationHoinka, Jan / Berezhnoy, Alexey / Sauna, Zuben E. / Gilboa, Eli / Przytycka, Teresa M. et al. | 2014
- 129
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Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical ModelsKamisetty, Hetunandan / Ghosh, Bornika / Langmead, Christopher James / Bailey-Kellogg, Chris et al. | 2014
- 144
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On Sufficient Statistics of Least-Squares Superposition of Vector SetsKonagurthu, Arun S. / Kasarapu, Parthan / Allison, Lloyd / Collier, James H. / Lesk, Arthur M. et al. | 2014
- 160
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IDBA-MTP: A Hybrid MetaTranscriptomic Assembler Based on Protein InformationLeung, Henry C. M. / Yiu, S. M. / Chin, Francis Y. L. et al. | 2014
- 173
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MRFalign: Protein Homology Detection through Alignment of Markov Random FieldsMa, Jianzhu / Wang, Sheng / Wang, Zhiyong / Xu, Jinbo et al. | 2014
- 175
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An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 BindingMahony, Shaun / Edwards, Matthew D. / Mazzoni, Esteban O. / Sherwood, Richard I. / Kakumanu, Akshay / Morrison, Carolyn A. / Wichterle, Hynek / Gifford, David K. et al. | 2014
- 177
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PASTA: Ultra-Large Multiple Sequence AlignmentMirarab, Siavash / Nguyen, Nam / Warnow, Tandy et al. | 2014
- 192
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Fast Flux Module Detection Using Matroid TheoryMüller, Arne C. / Bruggeman, Frank J. / Olivier, Brett G. / Stougie, Leen et al. | 2014
- 207
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Building a Pangenome Reference for a PopulationNguyen, Ngan / Hickey, Glenn / Zerbino, Daniel R. / Raney, Brian / Earl, Dent / Armstrong, Joel / Haussler, David / Paten, Benedict et al. | 2014
- 222
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CSAX: Characterizing Systematic Anomalies in eXpression DataNoto, Keith / Brodley, Carla / Majidi, Saeed / Bianchi, Diana W. / Slonim, Donna K. et al. | 2014
- 237
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WhatsHap: Haplotype Assembly for Future-Generation Sequencing ReadsPatterson, Murray / Marschall, Tobias / Pisanti, Nadia / Iersel, Leo / Stougie, Leen / Klau, Gunnar W. / Schönhuth, Alexander et al. | 2014
- 250
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Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation DataRaphael, Benjamin J. / Vandin, Fabio et al. | 2014
- 265
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dipSPAdes: Assembler for Highly Polymorphic Diploid GenomesSafonova, Yana / Bankevich, Anton / Pevzner, Pavel A. et al. | 2014
- 280
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An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate GenesShao, Mingfu / Lin, Yu / Moret, Bernard et al. | 2014
- 293
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HIT’nDRIVE: Multi-driver Gene Prioritization Based on Hitting TimeShrestha, Raunak / Hodzic, Ermin / Yeung, Jake / Wang, Kendric / Sauerwald, Thomas / Dao, Phuong / Anderson, Shawn / Beltran, Himisha / Rubin, Mark A. / Collins, Colin C. et al. | 2014
- 307
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Modeling Mutual Exclusivity of Cancer MutationsSzczurek, Ewa / Beerenwinkel, Niko et al. | 2014
- 309
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Viral Quasispecies Assembly via Maximal Clique EnumerationTöpfer, Armin / Marschall, Tobias / Bull, Rowena A. / Luciani, Fabio / Schönhuth, Alexander / Beerenwinkel, Niko et al. | 2014
- 311
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Correlated Protein Function Prediction via Maximization of Data-Knowledge ConsistencyWang, Hua / Huang, Heng / Ding, Chris et al. | 2014
- 326
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Bayesian Multiple Protein Structure AlignmentWang, Rui / Schmidler, Scott C. et al. | 2014
- 340
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Gene-Gene Interactions Detection Using a Two-Stage ModelWang, Zhanyong / Sul, Jae Hoon / Snir, Sagi / Lozano, Jose A. / Eskin, Eleazar et al. | 2014
- 356
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A Geometric Clustering Algorithm and Its Applications to Structural DataXu, Shutan / Zou, Shuxue / Wang, Lincong et al. | 2014
- 371
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A Spatial-Aware Haplotype Copying Model with Applications to Genotype ImputationYang, Wen-Yun / Hormozdiari, Farhad / Eskin, Eleazar / Pasaniuc, Bogdan et al. | 2014
- 385
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Traversing the k-mer Landscape of NGS Read Datasets for Quality Score SparsificationYu, Y. William / Yorukoglu, Deniz / Berger, Bonnie et al. | 2014
- 400
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Reconstructing Breakage Fusion Bridge Architectures Using Noisy Copy NumbersZakov, Shay / Bafna, Vineet et al. | 2014
- 418
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Reconciliation with Non-binary Gene Trees RevisitedZheng, Yu / Zhang, Louxin et al. | 2014
- 433
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Learning Protein-DNA Interaction Landscapes by Integrating Experimental Data through Computational ModelsZhong, Jianling / Wasson, Todd / Hartemink, Alexander J. et al. | 2014
- 448
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Imputation of Quantitative Genetic Interactions in Epistatic MAPs by Interaction Propagation Matrix CompletionŽitnik, Marinka / Zupan, Blaž et al. | 2014