Extracting abundance information from DNA‐based data (English)
- New search for: Luo, Mingjie
- New search for: Ji, Yinqiu
- New search for: Warton, David
- New search for: Yu, Douglas W.
- New search for: Luo, Mingjie
- New search for: Ji, Yinqiu
- New search for: Warton, David
- New search for: Yu, Douglas W.
In:
Molecular Ecology Resources
;
23
, 1
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174-189
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2023
- Article (Journal) / Electronic Resource
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Title:Extracting abundance information from DNA‐based data
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Contributors:Luo, Mingjie ( author ) / Ji, Yinqiu ( author ) / Warton, David ( author ) / Yu, Douglas W. ( author )
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Published in:Molecular Ecology Resources ; 23, 1 ; 174-189
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Publisher:
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Publication date:2023-01-01
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Size:16 pages
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Keywords:
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Source:
Table of contents – Volume 23, Issue 1
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1
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Editorial 2023Narum, Shawn / Kelley, Joanna / Thresher, Kimberley / Sibbett, Ben et al. | 2023
- 10
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Allometric scaling improves the characterization of complex community transcriptomesSemmouri, Ilias / Asselman, Jana et al. | 2023
- 13
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Sequencing our way to more accurate community abundanceBrennan, Georgina L. et al. | 2023
- 16
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A robust approach to estimate relative phytoplankton cell abundances from metagenomesPierella Karlusich, Juan José / Pelletier, Eric / Zinger, Lucie / Lombard, Fabien / Zingone, Adriana / Colin, Sébastien / Gasol, Josep M. / Dorrell, Richard G. / Henry, Nicolas / Scalco, Eleonora et al. | 2023
- 41
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The predator problem and PCR primers in molecular dietary analysis: Swamped or silenced; depth or breadth?Cuff, Jordan P. / Kitson, James J. N. / Hemprich‐Bennett, David / Tercel, Maximillian P. T. G. / Browett, Samuel S. / Evans, Darren M. et al. | 2023
- 52
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Allometric scaling of interspecific RNA transcript abundance to extend the use of metatranscriptomics in characterizing complex communitiesLopez, Mark Louie D. / Lin, Ya‐ying / Schneider, Stephan Q. / Hsieh, Chih‐hao / Shiah, Fuh‐Kwo / Machida, Ryuji J. et al. | 2023
- 64
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Quantitative prey species detection in predator guts across multiple trophic levels by mapping unassembled shotgun readsPaula, Débora P. / Timbó, Renata V. / Togawa, Roberto C. / Vogler, Alfried P. / Andow, David A. et al. | 2023
- 81
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Environmental DNA methylation of Lymnaea stagnalis varies with age and is hypermethylated compared to tissue DNAZhao, Beilun / van Bodegom, Peter M. / Trimbos, Krijn B. et al. | 2023
- 92
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Comparison of destructive and nondestructive DNA extraction methods for the metabarcoding of arthropod bulk samplesKirse, Ameli / Bourlat, Sarah J. / Langen, Kathrin / Zapke, Björn / Zizka, Vera M. A. et al. | 2023
- 106
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Accurate identification of taxon‐specific molecular markers in plants based on DNA signature sequenceHua, Zhongyi / Jiang, Chao / Song, Shuhui / Tian, Dongmei / Chen, Ziyuan / Jin, Yan / Zhao, Yuyang / Zhou, Junhui / Zhang, Zhang / Huang, Luqi et al. | 2023
- 118
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Application of palaeogenetic techniques to historic mollusc shells reveals phylogeographic structure in a New Zealand abaloneWalton, Kerry / Scarsbrook, Lachie / Mitchell, Kieren J. / Verry, Alexander J. F. / Marshall, Bruce A. / Rawlence, Nicolas J. / Spencer, Hamish G. et al. | 2023
- 131
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Development of DNA methylation‐based epigenetic age predictors in loblolly pine (Pinus taeda)Gardner, Steven T. / Bertucci, Emily M. / Sutton, Randall / Horcher, Andy / Aubrey, Doug / Parrott, Benjamin B. et al. | 2023
- 145
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Comparing mixed models and Random Forest association tests using naturalgwas and a Striped Bass SNP data setLeBlanc, Nathalie M. / Pavey, Scott A. et al. | 2023
- 159
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Diet preferences based on sequence read count: The role of species interaction in tissue bias correctionZhu, Di / Wu, Feng / Li, Hailong / Wang, Tianming / Bao, Lei / Ge, Jianping / Wang, Hongfang et al. | 2023
- 174
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Extracting abundance information from DNA‐based dataLuo, Mingjie / Ji, Yinqiu / Warton, David / Yu, Douglas W. et al. | 2023
- 190
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A consensus protocol for the recovery of mercury methylation genes from metagenomesCapo, Eric / Peterson, Benjamin D. / Kim, Minjae / Jones, Daniel S. / Acinas, Silvia G. / Amyot, Marc / Bertilsson, Stefan / Björn, Erik / Buck, Moritz / Cosio, Claudia et al. | 2023
- 205
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Chromosome‐level genome assembly defines female‐biased genes associated with sex determination and differentiation in the human blood fluke Schistosoma japonicumXu, Xindong / Wang, Yifeng / Wang, Changhong / Guo, Gangqiang / Yu, Xinyu / Dai, Yang / Liu, Yaobao / Wei, Guiying / He, Xiaohui / Jin, Ge et al. | 2023
- 222
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FreshOmics: A manually curated and standardized –omics database for investigating freshwater microbiomesBiderre‐Petit, Corinne / Charvy, Jean‐Christophe / Bronner, Gisèle / Chauvet, Marina / Debroas, Didier / Gardon, Hélène / Hennequin, Claire / Jouan‐Dufournel, Isabelle / Moné, Anne / Monjot, Arthur et al. | 2023
- 233
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Chromosomal‐level assembly of Bactericera cockerelli reveals rampant gene family expansions impacting genome structure, function and insect‐microbe‐plant‐interactionsKwak, Younghwan / Argandona, Jacob A. / Degnan, Patrick H. / Hansen, Allison K. et al. | 2023
- 253
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Assembly of high‐quality genomes of the locoweed Oxytropis ochrocephala and its endophyte Alternaria oxytropis provides new evidence for their symbiotic relationship and swainsonine biosynthesisZhang, Li / Wu, Ruolin / Mur, Luis A. J. / Guo, Chenchen / Zhao, Xuan / Meng, Huizhen / Yan, Di / Zhang, Xiuhong / Guan, Huirui / Han, Guodong et al. | 2023
- 273
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High‐quality genomes reveal significant genetic divergence and cryptic speciation in the model organism Folsomia candida (collembola)Luan, Yun‐Xia / Cui, Yingying / Chen, Wan‐Jun / Jin, Jian‐Feng / Liu, Ai‐Min / Huang, Cheng‐Wang / Potapov, Mikhail / Bu, Yun / Zhan, Shuai / Zhang, Feng et al. | 2023
- 294
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Genomic investigation of the Chinese alligator reveals wild‐extinct genetic diversity and genomic consequences of their continuous declineYang, Shangchen / Lan, Tianming / Zhang, Yi / Wang, Qing / Li, Haimeng / Dussex, Nicolas / Sahu, Sunil Kumar / Shi, Minhui / Hu, Mengyuan / Zhu, Yixin et al. | 2023
- 312
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SCNIC: Sparse correlation network investigation for compositional dataShaffer, Michael / Thurimella, Kumar / Sterrett, John D. / Lozupone, Catherine A. et al. | 2023
- i
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Issue Information| 2023