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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
Free accessDOAJ | 2017| -
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
Free accessDOAJ | 2019| -
mixOmics: An R package for 'omics feature selection and multiple data integration.
Free accessDOAJ | 2017| -
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
Free accessDOAJ | 2018| -
ranger: A Fast Implementation of Random Forests for High Dimensional Data in C++ and R
Free accessDOAJ | 2017| -
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics.
Free accessDOAJ | 2017| -
Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance.
Free accessDOAJ | 2012| -
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Free accessDOAJ | 2011| -
Dynamics analysis of a delayed virus model with two different transmission methods and treatments
Free accessDOAJ | 2020| -
Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
Free accessDOAJ | 2021| -
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model.
Free accessDOAJ | 2017| -
CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing.
Free accessDOAJ | 2016| -
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Free accessDOAJ | 2018| -
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
Free accessDOAJ | 2018| -
Best Practices for Estimating, Interpreting, and Presenting Nonlinear Interaction Effects
Free accessDOAJ | 2019| -
Projecting social contact matrices in 152 countries using contact surveys and demographic data.
Free accessDOAJ | 2017| -
Integrating Hi-C links with assembly graphs for chromosome-scale assembly.
Free accessDOAJ | 2019| -
Practical considerations for measuring the effective reproductive number, Rt.
Free accessDOAJ | 2020| -
Multivariable association discovery in population-scale meta-omics studies.
Free accessDOAJ | 2021| -
pROC: an open-source package for R and S+ to analyze and compare ROC curves
Free accessDOAJ | 2011| -
NbClust: An R Package for Determining the Relevant Number of Clusters in a Data Set
Free accessDOAJ | 2014| -
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
Free accessDOAJ | 2012| -
Sequence determinants of protein phase behavior from a coarse-grained model.
Free accessDOAJ | 2018|
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