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Trimmomatic: a flexible trimmer for Illumina sequence data
Oxford University Press | 2014|Publisher: Oxford University Press -
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Oxford University Press | 2015|Publisher: Oxford University Press -
Roary: rapid large-scale prokaryote pan genome analysis
Oxford University Press | 2015|Publisher: Oxford University Press -
Search and clustering orders of magnitude faster than BLAST
Oxford University Press | 2010|Publisher: Oxford University Press -
UCHIME improves sensitivity and speed of chimera detection
Oxford University Press | 2011|Publisher: Oxford University Press -
Prokka: rapid prokaryotic genome annotation
Oxford University Press | 2014|Publisher: Oxford University Press -
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Oxford University Press | 2015|Publisher: Oxford University Press -
ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
Oxford University Press | 2015|Publisher: Oxford University Press -
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
Oxford University Press | 2014|Publisher: Oxford University Press -
LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants
Oxford University Press | 2015|Publisher: Oxford University Press
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