miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades (English)
- New search for: Friedlander, M.R.
- New search for: Mackowiak, S.D.
- New search for: Li, N.
- New search for: Chen, W.
- New search for: Rajewsky, N.
- New search for: Friedlander, M.R.
- New search for: Mackowiak, S.D.
- New search for: Li, N.
- New search for: Chen, W.
- New search for: Rajewsky, N.
In:
NUCLEIC ACIDS RESEARCH
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40
, 1
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37-52
;
2012
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ISSN:
- Article (Journal) / Print
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Title:miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
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Contributors:Friedlander, M.R. ( author ) / Mackowiak, S.D. ( author ) / Li, N. ( author ) / Chen, W. ( author ) / Rajewsky, N. ( author )
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Published in:NUCLEIC ACIDS RESEARCH ; 40, 1 ; 37-52
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Publisher:
- New search for: Oxford University Press
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Publication date:2012-01-01
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Size:16 pages
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ISSN:
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Type of media:Article (Journal)
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Type of material:Print
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Language:English
- New search for: 574.8732 / 574
- Further information on Dewey Decimal Classification
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Classification:
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Source:
© Metadata Copyright the British Library Board and other contributors. All rights reserved.
Table of contents – Volume 40, Issue 1
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1
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Regulated functional alternative splicing in DrosophilaVenables, J.P. / Tazi, J. / Juge, F. et al. | 2012
- 11
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Triplet repeat RNA structure and its role as pathogenic agent and therapeutic targetKrzyzosiak, W.J. / Sobczak, K. / Wojciechowska, M. / Fiszer, A. / Mykowska, A. / Kozlowski, P. et al. | 2012
- 27
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Nuclear colocalization of transcription factor target genes strengthens coregulation in yeastDai, Z. / Dai, X. et al. | 2012
- 37
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miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal cladesFriedlander, M.R. / Mackowiak, S.D. / Li, N. / Chen, W. / Rajewsky, N. et al. | 2012
- 53
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Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegansChu, J.S.C. / Tarailo-Graovac, M. / Zhang, D. / Wang, J. / Uyar, B. / Tu, D. / Trinh, J. / Baillie, D.L. / Chen, N. et al. | 2012
- 65
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Genome-wide H4 K16 acetylation by SAS-I is deposited independently of transcription and histone exchangeHeise, F. / Chung, H.-R. / Weber, J.M. / Xu, Z. / Klein-Hitpass, L. / Steinmetz, L.M. / Vingron, M. / Ehrenhofer-Murray, A.E. et al. | 2012
- 75
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Inhibition of p53 acetylation by INHAT subunit SET/TAF-I beta represses p53 activityKim, J.-Y. / Lee, K.-S. / Seol, J.-E. / Yu, K. / Chakravarti, D. / Seo, S.-B. et al. | 2012
- 88
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Transcription factor Sox10 orchestrates activity of a neural crest-specific enhancer in the vicinity of its geneWahlbuhl, M. / Reiprich, S. / Vogl, M.R. / Bosl, M.R. / Wegner, M. et al. | 2012
- 102
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Epigenetic regulation by RAR alpha maintains ligand-independent transcriptional activityLaursen, K.B. / Wong, P.-M. / Gudas, L.J. et al. | 2012
- 116
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A promoter DNA demethylation landscape of human hematopoietic differentiationCalvanese, V. / Fernandez, A.F. / Urdinguio, R.G. / Suarez-Alvarez, B. / Mangas, C. / Perez-Garcia, V. / Bueno, C. / Montes, R. / Ramos-Mejia, V. / Martinez-Camblor, P. et al. | 2012
- 132
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An insulator loop resides between the synthetically interacting elements of the human/rat conserved breast cancer susceptibility locus MCS5A/Mcs5aSmits, B.M.G. / Traun, B.D. / Devries, T.L. / Tran, A. / Samuelson, D. / Haag, J.D. / Gould, M. et al. | 2012
- 148
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Integrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classesMokry, M. / Hatzis, P. / Schuijers, J. / Lansu, N. / Ruzius, F.-P. / Clevers, H. / Cuppen, E. et al. | 2012
- 159
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Histone hypoacetylation is required to maintain late replication timing of constitutive heterochromatinCasas-Delucchi, C.S. / van Bemmel, J.G. / Haase, S. / Herce, H.D. / Nowak, D. / Meilinger, D. / Stear, J.H. / Leonhardt, H. / Cardoso, M.C. et al. | 2012
- 170
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DNA damage bypass operates in the S and G2 phases of the cell cycle and exhibits differential mutagenicityDiamant, N. / Hendel, A. / Vered, I. / Carell, T. / Reissner, T. / de Wind, N. / Geacinov, N. / Livneh, Z. et al. | 2012
- 181
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NF- kappa B regulates DNA double-strand break repair in conjunction with BRCA1-CtIP complexesVolcic, M. / Karl, S. / Baumann, B. / Salles, D. / Daniel, P. / Fulda, S. / Wiesmuller, L. et al. | 2012
- 196
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Differential regulation of RNF8-mediated Lys48- and Lys63-based poly-ubiquitylationLok, G.T.-M. / Sy, S.M.-H. / Dong, S.-S. / Ching, Y.-P. / Tsao, S.W. / Thomson, T.M. / Huen, M.S.Y. et al. | 2012
- 206
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Targeted detection of in vivo endogenous DNA base damage reveals preferential base excision repair in the transcribed strandReis, A.M.C. / Mills, W.K. / Ramachandran, I. / Friedberg, E.C. / Thompson, D. / Queimado, L. et al. | 2012
- 220
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Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilisOkumura, H. / Yoshimura, M. / Ueki, M. / Oshima, T. / Ogasawara, N. / Ishikawa, S. et al. | 2012
- 235
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DNA-induced dimerization of the single-stranded DNA binding telomeric protein Pot1 from Schizosaccharomyces pombeNandakumar, J. / Cech, T.R. et al. | 2012
- 245
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The genome maintenance factor Mgs1 is targeted to sites of replication stress by ubiquitylated PCNASaugar, I. / Parker, J.L. / Zhao, S. / Ulrich, H.D. et al. | 2012
- 258
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A conserved lysine residue of plant Whirly proteins is necessary for higher order protein assembly and protection against DNA damageCappadocia, L. / Parent, J.-S. / Zampini, E. / Lepage, E. / Sygusch, J. / Brisson, N. et al. | 2012
- 270
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Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cellsCarriere, L. / Graziani, S. / Alibert, O. / Ghavi-Helm, Y. / Boussouar, F. / Humbertclaude, H. / Jounier, S. / Aude, J.-C. / Keime, C. / Murvai, J. et al. | 2012
- 284
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How environmental solution conditions determine the compaction velocity of single DNA moleculesHirano, K. / Ichikawa, M. / Ishido, T. / Ishikawa, M. / Baba, Y. / Yoshikawa, K. et al. | 2012
- 290
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La enhances IRES-mediated translation of laminin B1 during malignant epithelial to mesenchymal transitionPetz, M. / Them, N. / Huber, H. / Beug, H. / Mikulits, W. et al. | 2012
- 303
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mRNA pseudoknot structures can act as ribosomal roadblocksTholstrup, J. / Oddershede, L.B. / Sorensen, M.A. et al. | 2012
- 314
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Alanyl-tRNA synthetase genes of Vanderwaltozyma polyspora arose from duplication of a dual-functional predecessor of mitochondrial originChang, C.-P. / Tseng, Y.-K. / Ko, C.-Y. / Wang, C.-C. et al. | 2012
- 323
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Non-targeting siRNA induces NPGPx expression to cooperate with exoribonuclease XRN2 for releasing the stressWei, P.-C. / Lo, W.-T. / Su, M.-I. / Shew, J.-Y. / Lee, W.-H. et al. | 2012
- 333
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tRNAHis-guanylyltransferase establishes tRNAHis identityHeinemann, I.U. / Nakamura, A. / O Donoghue, P. / Eiler, D. / Soll, D. et al. | 2012
- 345
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Biochemical, inhibition and inhibitor resistance studies of xenotropic murine leukemia virus-related virus reverse transcriptaseNdongwe, T.P. / Adedeji, A.O. / Michailidis, E. / Ong, Y.T. / Hachiya, A. / Marchand, B. / Ryan, E.M. / Rai, D.K. / Kirby, K.A. / Whatley, A.S. et al. | 2012
- 360
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Thiostrepton inhibits stable 70S ribosome binding and ribosome-dependent GTPase activation of elongation factor G and elongation factor 4Walter, J.D. / Hunter, M. / Cobb, M. / Traeger, G. / Spiegel, P.C. et al. | 2012
- 371
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Opening-closing dynamics of the mitochondrial transcription pre-initiation complexKim, H. / Tang, G.-Q. / Patel, S.S. / Ha, T. et al. | 2012
- 381
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Substrate mimicry: HIV-1 reverse transcriptase recognizes 6-modified-3'-azido-2',3'-dideoxyguanosine-5'-triphosphates as adenosine analogsHerman, B.D. / Schinazi, R.F. / Zhang, H.-w. / Nettles, J.H. / Stanton, R. / Detorio, M. / Obikhod, A. / Pradere, U. / Coats, S.J. / Mellors, J.W. et al. | 2012
- 391
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Loss of ribosomal RNA modification causes developmental defects in zebrafishHiga-Nakamine, S. / Suzuki, T. / Uechi, T. / Chakraborty, A. / Nakajima, Y. / Nakamura, M. / Hirano, N. / Kenmochi, N. et al. | 2012
- 399
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dsRNA expression in the mouse elicits RNAi in oocytes and low adenosine deamination in somatic cellsNejepinska, J. / Malik, R. / Filkowski, J. / Flemr, M. / Filipowicz, W. / Svoboda, P. et al. | 2012
- 414
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Deep sequencing of virus-infected cells reveals HIV-encoded small RNAsSchopman, N.C.T. / Willemsen, M. / Liu, Y.P. / Bradley, T. / van Kampen, A. / Baas, F. / Berkhout, B. / Haasnoot, J. et al. | 2012
- 428
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Activation and repression functions of an SR splicing regulator depend on exonic versus intronic-binding positionShen, M. / Mattox, W. et al. | 2012
- 438
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The biogenesis and characterization of mammalian microRNAs of mirtron originSibley, C.R. / Seow, Y. / Saayman, S. / Dijkstra, K.K. / El Andaloussi, S. / Weinberg, M.S. / Wood, M.J.A. et al. | 2012
- 449
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Structure of the Trichomonas vaginalis Myb3 DNA-binding domain bound to a promoter sequence reveals a unique C-terminal beta -hairpin conformationWei, S.-Y. / Lou, Y.-C. / Tsai, J.-Y. / Ho, M.-R. / Chou, C.-C. / Rajasekaran, M. / Hsu, H.-M. / Tai, J.-H. / Hsiao, C.-D. / Chen, C. et al. | 2012
- 461
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The insertion of two 8-methyl-2'-deoxyguanosine residues in tetramolecular quadruplex structures: trying to orientate the strandsVirgilio, A. / Esposito, V. / Citarella, G. / Pape, A. / Mayol, L. / Galeone, A. et al. | 2012
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Site-specific isotope labeling of long RNA for structural and mechanistic studiesKawahara, I. / Haruta, K. / Ashihara, Y. / Yamanaka, D. / Kuriyama, M. / Toki, N. / Kondo, Y. / Teruya, K. / Ishikawa, J. / Furuta, H. et al. | 2012
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Optimized detection of transcription factor-binding sites in ChIP-seq experimentsElo, L.L. / Kallio, A. / Laajala, T.D. / Hawkins, R.D. / Korpelainen, E. / Aittokallio, T. et al. | 2012
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Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platformKircher, M. / Sawyer, S. / Meyer, M. et al. | 2012
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Detection of recombination events in bacterial genomes from large population samplesMarttinen, P. / Hanage, W.P. / Croucher, N.J. / Connor, T.R. / Harris, S.R. / Bentley, S.D. / Corander, J. et al. | 2012
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Gene prediction with Glimmer for metagenomic sequences augmented by classification and clusteringKelley, D.R. / Liu, B. / Delcher, A.L. / Pop, M. / Salzberg, S.L. et al. | 2012
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Highly parallel oligonucleotide purification and functionalization using reversible chemistryYork, K.T. / Smith, R.C. / Yang, R. / Melnyk, P.C. / Wiley, M.M. / Turk, C.M. / Ronaghi, M. / Gunderson, K.L. / Steemers, F.J. et al. | 2012
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Ultrasensitive detection of rare mutations using next-generation targeted resequencingFlaherty, P. / Natsoulis, G. / Muralidharan, O. / Winters, M. / Buenrostro, J. / Bell, J. / Brown, S. / Holodniy, M. / Zhang, N. / Ji, H.P. et al. | 2012
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A cross-sample statistical model for SNP detection in short-read sequencing dataMuralidharan, O. / Natsoulis, G. / Bell, J. / Newburger, D. / Xu, H. / Kela, I. / Ji, H. / Zhang, N. et al. | 2012
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Increased in vivo inhibition of gene expression by combining RNA interference and U1 inhibitionBlazquez, L. / Gonzalez-Rojas, S.J. / Abad, A. / Razquin, N. / Abad, X. / Fortes, P. et al. | 2012