Bioinformatics tools and databases for whole genome sequence analysis of Mycobacterium tuberculosis (English)
- New search for: Faksri, K.
- New search for: Tan, J. H.
- New search for: Chaiprasert, A.
- New search for: Teo, Y. Y.
- New search for: Ong, R. T.
- New search for: Faksri, K.
- New search for: Tan, J. H.
- New search for: Chaiprasert, A.
- New search for: Teo, Y. Y.
- New search for: Ong, R. T.
In:
INFECTION GENETICS AND EVOLUTION
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45
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359-368
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2016
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ISSN:
- Article (Journal) / Print
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Title:Bioinformatics tools and databases for whole genome sequence analysis of Mycobacterium tuberculosis
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Contributors:Faksri, K. ( author ) / Tan, J. H. ( author ) / Chaiprasert, A. ( author ) / Teo, Y. Y. ( author ) / Ong, R. T. ( author )
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Published in:INFECTION GENETICS AND EVOLUTION ; 45 ; 359-368
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Publisher:
- New search for: Elsevier Science B.V., Amsterdam.
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Publication date:2016-01-01
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Size:10 pages
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ISSN:
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Type of media:Article (Journal)
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Type of material:Print
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Language:English
- New search for: 572.8293
- Further information on Dewey Decimal Classification
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Classification:
DDC: 572.8293 -
Source:
© Metadata Copyright the British Library Board and other contributors. All rights reserved.
Table of contents – Volume 45
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1
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High prevalence of clade 8 Escherichia coli O157:H7 isolated from retail meat and butcher shop environmentGalli, Lucía / Brusa, Victoria / Singh, Pallavi / Cataldi, Angel Adrián / Manning, Shannon / Peral-García, Pilar / Leotta, Gerardo Aníbal et al. | 2016
- 6
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Genomic changes detected after serial passages in cell culture of virulent human G1P[8] rotavirusesTsugawa, Takeshi / Tsutsumi, Hiroyuki et al. | 2016
- 11
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Phylogenetic and antigenic analysis of avian infectious bronchitis virus in southwestern China, 2012–2016Xia, Jing / He, Xiao / Yao, Ke-Chang / Du, Li-Jing / Liu, Ping / Yan, Qi-Gui / Wen, Yi-Ping / Cao, San-Jie / Han, Xin-Feng / Huang, Yong et al. | 2016
- 20
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Common haplotypes in CD209 promoter and susceptibility to HIV-1 infection in intravenous drug usersHerrero, Rocio / Pineda, Juan A. / Rivero-Juarez, Antonio / Echbarthi, Meriem / Real, Luis-Miguel / Camacho, Angela / Macias, Juan / Fibla, Joan / Rivero, Antonio / Caruz, Antonio et al. | 2016
- 26
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Molecular phylogeny of a genetically divergent hantavirus harbored by the Geoffroy's rousette (Rousettus amplexicaudatus), a frugivorous bat species in the PhilippinesArai, S. / Taniguchi, S. / Aoki, K. / Yoshikawa, Y. / Kyuwa, S. / Tanaka-Taya, K. / Masangkay, J. S. / Omatsu, T. / Puentespina, R. / Watanabe, S. et al. | 2016
- 33
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Genetic gradient of a host–parasite pair along a river persisted ten years against physical mobility: Baltic Salmo salar vs. Gyrodactylus salarisLumme, Jaakko / Anttila, Pasi / Rintamäki, Päivi / Koski, Perttu / Romakkaniemi, Atso et al. | 2016
- 40
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Genotyping of vitamin D receptor gene polymorphisms using mismatched amplification mutation assay in neonatal sepsis patients of Odisha, eastern IndiaDas, B. / Patra, S. / Behera, C. / Suar, M. et al. | 2016
- 48
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Influence of IL10 Gene polymorphisms on the sustained virologic response of patients with chronic hepatitis C to PEG-interferon/ribavirin therapyGuo, P. / Li, G. / Sun, X. / Wu, D. et al. | 2016
- 56
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Population dynamics of Anopheles nuneztovari in ColombiaNaranjo-Díaz, Nelson / Sallum, Maria Anice M. / Correa, Margarita M. et al. | 2016
- 66
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Unexpected genomic relationships between Bacillus anthracis strains from Bangladesh and Central EuropeRume, Farzana Islam / Ahsan, Chowdhury Rafiqul / Biswas, Paritosh Kumar / Yasmin, Mahmuda / Braun, Peter / Walter, Mathias C. / Antwerpen, Markus / Grass, Gregor / Hanczaruk, Matthias et al. | 2016
- 75
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Contribution of mexAB-oprM and mexXY (-oprA) efflux operons in antibiotic resistance of clinical Pseudomonas aeruginosa isolates in Tabriz, IranGoli, Hamid Reza / Nahaei, Mohammad Reza / Rezaee, Mohammad Ahangarzadeh / Hasani, Alka / Samadi Kafil, Hossein / Aghazadeh, Mohammad / Sheikhalizadeh, Vajihe et al. | 2016
- 83
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Gene sequencing and variable site analyzing of coding region of two enterovirus A71 isolates with different clinical phenotypesXie, Bing-Yu / Xu, Chao / Xiong, Qing / Zhu, Meng / Duan, Hao / Wang, Yu-Ya / Zhang, Hao / Ni, Xue-Fei / Wang, Ling-Hang / Li, Xing-Wang et al. | 2016
- 90
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Dynamic changes of Plasmodium vivax population structure in South KoreaKang, J. M. / Lee, J. / Cho, P. Y. / Kim, T. I. / Sohn, W. M. / Park, J. W. / Kim, T. S. / Na, B. K. et al. | 2016
- 95
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Prevalence and genetic diversity of Blastocystis in family units living in the United StatesScanlan, Pauline D. / Knight, Rob / Song, Se Jin / Ackermann, Gail / Cotter, Paul D. et al. | 2016
- 98
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Genetic variability and infective ability of the rabbit trypanosome, Trypanosoma nabiasi Railliet 1895, in southern SpainMerino-Espinosa, G. / Corpas-López, V. / Morillas-Márquez, F. / Díaz-Sáez, V. / Martín-Sánchez, J. et al. | 2016
- 105
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Genetic variants of the MAVS, MITA and MFN2 genes are not associated with leprosy in Han Chinese from Southwest ChinaWang, Dong / Li, Guo-Dong / Zhang, Deng-Feng / Xu, Ling / Li, Xiao-An / Yu, Xiu-Feng / Long, Heng / Li, Yu-Ye / Yao, Yong-Gang et al. | 2016
- 111
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Lose to win: marT pseudogenization in Salmonella enterica serovar Typhi contributed to the surV-dependent survival to H2O2, and inside human macrophage-like cellsOrtega, A. P. / Villagra, N. A. / Urrutia, I. M. / Valenzuela, L. M. / Talamilla-Espinoza, A. / Hidalgo, A. A. / Rodas, P. I. / Gil, F. / Calderón, I. L. / Paredes-Sabja, D. et al. | 2016
- 122
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Genomic constellation and evolution of Ghanaian G2P[4] rotavirus strains from a global perspectiveAgbemabiese, Chantal Ama / Nakagomi, Toyoko / Doan, Yen Hai / Do, Loan Phuong / Damanka, Susan / Armah, George E. / Nakagomi, Osamu et al. | 2016
- 132
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The role of CCR5 in Chagas disease - a systematic reviewde Oliveira, Amanda P. / Ayo, Christiane M. / Bestetti, Reinaldo B. / Brandão de Mattos, Cinara C. / Cavasini, Carlos E. / de Mattos, Luiz C. et al. | 2016
- 138
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Impact of exposure to mosquito transmission-blocking antibodies on Plasmodium falciparum population genetic structureSandeu, Maurice M. / Abate, Luc / Tchioffo, Majoline T. / Bayibéki, Albert N. / Awono-Ambéné, Parfait H. / Nsango, Sandrine E. / Chesnais, Cédric B. / Dinglasan, Rhoel R. / de Meeûs, Thierry / Morlais, Isabelle et al. | 2016
- 145
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Mumps virus F gene and HN gene sequencing as a molecular tool to study mumps virus transmissionGouma, Sigrid / Cremer, Jeroen / Parkkali, Saara / Veldhuijzen, Irene / van Binnendijk, Rob S. / Koopmans, Marion P.G. et al. | 2016
- 151
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Drivers of bacterial genomes plasticity and roles they play in pathogen virulence, persistence and drug resistancePatel, S. et al. | 2016
- 165
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MIRU-VNTR allelic variability depends on Mycobacterium bovis clonal group identityHauer, Amandine / Michelet, Lorraine / De Cruz, Krystel / Cochard, Thierry / Branger, Maxime / Karoui, Claudine / Henault, Sylvie / Biet, Franck / Boschiroli, María Laura et al. | 2016
- 170
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ABO, Secretor and Lewis histo-blood group systems influence the digestive form of Chagas diseaseBernardo, Cássia Rubia / Camargo, Ana Vitória Silveira / Ronchi, Luís Sérgio / de Oliveira, Amanda Priscila / de Campos Júnior, Eumildo / Borim, Aldenis Albaneze / Brandão de Mattos, Cinara Cássia / Bestetti, Reinaldo Bulgarelli / de Mattos, Luiz Carlos et al. | 2016
- 176
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Comprehensive profiling and characterization of cellular miRNAs in response to hepatitis A virus infection in human fibroblastsShi, Jiandong / Sun, Jing / Wu, Meini / Wang, Haixuan / Hu, Ningzhu / Hu, Yunzhang et al. | 2016
- 187
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Computational prediction and analysis of potential antigenic CTL epitopes in Zika virus: A first step towards vaccine developmentDikhit, Manas R. / Ansari, Md. Yousuf / Mansuri, Rani / Sahoo, Bikash R. / Dehury, Budheswar / Amit, Ajay / Topno, Roshan K. / Sahoo, Ganesh C. / Ali, Vahab / Bimal, Sanjiva et al. | 2016
- 198
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Searching beyond the usual papillomavirus suspects in squamous carcinomas of the vulva, penis and head and neckFélez-Sánchez, M. / Vergara, M. / de Sanjosé, S. / Castellsagué, X. / Alemany, L. / Bravo, I. G. et al. | 2016
- 205
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Experimental crosses between Mepraia gajardoi and M. spinolai and hybrid chromosome analyses reveal the occurrence of several isolation mechanismsCampos-Soto, Ricardo / Panzera, Francisco / Pita, Sebastian / Lages, Carol / Solari, Aldo / Botto-Mahan, Carezza et al. | 2016
- 213
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Evolutionary rates and genetic diversities of mixed potyviruses in NarcissusOhshima, K. / Nomiyama, R. / Mitoma, S. / Honda, Y. / Yasaka, R. / Tomimura, K. et al. | 2016
- 224
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Isolation of Tioman virus from Pteropus giganteus bat in North-East region of IndiaYadav, P. / Sarkale, P. / Patil, D. / Shete, A. / Kokate, P. / Kumar, V. / Jain, R. / Jadhav, S. / Basu, A. / Pawar, S. et al. | 2016
- 230
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Fowl adenovirus species C serotype 4 is attributed to the emergence of hepatitis-hydropericardium syndrome in chickens in ChinaLi, H. / Wang, J. / Qiu, L. / Han, Z. / Liu, S. et al. | 2016
- 242
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Complete genome characterisation and phylogenetic position of Tigray hantavirus from the Ethiopian white-footed mouse, Stenocephalemys albipesGoüy de Bellocq, Joëlle / Těšíková, Jana / Meheretu, Yonas / Čížková, Dagmar / Bryjová, Anna / Leirs, Herwig / Bryja, Josef et al. | 2016
- 246
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The role of IS26 in evolution of a derivative of the virulence plasmid of Salmonella enterica serovar Enteritidis which confers multiple drug resistanceGarcía, V. / García, P. / Rodríguez, I. / Rodicio, R. / Rodicio, M. R. et al. | 2016
- 250
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Molecular evolution of emerging Banna virusLiu, Hong / Gao, Xiao-Yan / Fu, Shi-Hong / Li, Ming-Hua / Zhai, You-Gang / Meng, Wei-Shan / Sun, Xiao-Hong / Lv, Zhi / Wang, Huan-Yu / Shen, Xin-Xin et al. | 2016
- 256
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Development of a multilocus sequence typing tool for high-resolution subtyping and genetic structure characterization of Cryptosporidium ubiquitumTang, Ying / Li, Na / Song, Mingxin / Roellig, Dawn M. / Feng, Yaoyu / Xiao, Lihua et al. | 2016
- 262
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Phylogeography, phylodynamics and transmission chains of bovine viral diarrhea virus subtype 1f in Northern ItalyCerutti, F. / Luzzago, C. / Lauzi, S. / Ebranati, E. / Caruso, C. / Masoero, L. / Moreno, A. / Acutis, P. L. / Zehender, G. / Peletto, S. et al. | 2016
- 268
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Genetic diversity and pathogenic potential of low pathogenic H7 avian influenza viruses isolated from wild migratory birds in KoreaKim, Young-Il / Kim, Si-Wook / Si, Young-Jae / Kwon, Hyeok-Il / Park, Su-Jin / Kim, Eun-Ha / Kim, Se mi / Lee, In-Won / Song, Min-Suk / Choi, Young-Ki et al. | 2016
- 285
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Genomic diversity in Mycobacterium leprae isolates from leprosy cases in South IndiaDas, Madhusmita / Chaitanya, V. Sundeep / Kanmani, K. / Rajan, Lakshmi / Ebenezer, Mannam et al. | 2016
- 290
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Genetic diversity and phylogeography of highly zoonotic Echinococcus granulosus genotype G1 in the Americas (Argentina, Brazil, Chile and Mexico) based on 8279bp of mtDNALaurimäe, Teivi / Kinkar, Liina / Andresiuk, Vanessa / Haag, Karen Luisa / Ponce-Gordo, Francisco / Acosta-Jamett, Gerardo / Garate, Teresa / Gonzàlez, Luis Miguel / Saarma, Urmas et al. | 2016
- 297
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VNTR diversity in Yersinia pestis isolates from an animal challenge study reveals the potential for in vitro mutations during laboratory cultivationVogler, A. J. / Nottingham, R. / Busch, J. D. / Sahl, J. W. / Shuey, M. M. / Foster, J. T. / Schupp, J. M. / Smith, S. R. / Rocke, T. E. / Keim, P. et al. | 2016
- 303
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Population analysis of clinical and environmental Vibrio parahaemolyticus isolated from eastern provinces in China by removing the recombinant SNPs in the MLST lociLu, Xin / Zhou, Haijian / Du, Xiaoli / Liu, Sha / Xu, Jialiang / Cui, Zhigang / Pang, Bo / Kan, Biao et al. | 2016
- 311
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Comparative genome and evolutionary analysis of naturally occurring Beilong virus in brown and black ratsWoo, Patrick C.Y. / Wong, Annette Y.P. / Wong, Beatrice H.L. / Lam, Carol S.F. / Fan, Rachel Y.Y. / Lau, Susanna K.P. / Yuen, Kwok-Yung et al. | 2016
- 320
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Cloning, expression, molecular characterization and preliminary studies on immunomodulating properties of recombinant Trypanosoma congolense calreticulinBossard, G. / Grébaut, P. / Thévenon, S. / Séveno, M. / Berthier, D. / Holzmuller, P. et al. | 2016
- 332
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G+C content differs in conserved and variable amino acid residues of flaviviruses and other evolutionary groupsKlitting, Raphaëlle / Gould, Ernest Andrew / de Lamballerie, Xavier et al. | 2016
- 341
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Microgeographically diverse Plasmodium vivax populations at the Thai-Myanmar borderGupta, B. / Parker, D. M. / Fan, Q. / Reddy, B. P. / Yan, G. / Sattabongkot, J. / Cui, L. et al. | 2016
- 347
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Spatial and temporal heterogeneity of infectious hematopoietic necrosis virus in Pacific Northwest salmonidsBreyta, R. / Black, A. / Kaufman, J. / Kurath, G. et al. | 2016
- 359
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Bioinformatics tools and databases for whole genome sequence analysis of Mycobacterium tuberculosisFaksri, K. / Tan, J. H. / Chaiprasert, A. / Teo, Y. Y. / Ong, R. T. et al. | 2016
- 369
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A complete mitochondrial genome from Echinochasmus japonicus supports the elevation of Echinochasminae Odhner, 1910 to family rank (Trematoda: Platyhelminthes)Le, T. H. / Nguyen, N. T. / Nguyen, K. T. / Doan, H. T. / Dung, D. T. / Blair, D. et al. | 2016
- 378
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MicroRNAs play big roles in modulating macrophages response toward mycobacteria infectionAbdalla, A. E. / Duan, X. / Deng, W. / Zeng, J. / Xie, J. et al. | 2016
- 383
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Molecular evolution and phylogenetic analysis of biocontrol genes acquired from SCoT polymorphism of mycoparasitic Trichoderma koningii inhibiting phytopathogen Rhizoctonia solani KuhnGajera, H.P. / Hirpara, Darshna G. / Katakpara, Zinkal A. / Patel, S.V. / Golakiya, B.A. et al. | 2016
- 393
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The role of mouse 2′, 5′-oligoadenylate synthetase 1 paralogsElkhateeb, Enas / Tag-El-Din-Hassan, Hassan T. / Sasaki, Nobuya / Torigoe, Daisuke / Morimatsu, Masami / Agui, Takashi et al. | 2016
- 402
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Whole genome sequencing and phylogenetic characterization of brown bullhead (Ameiurus nebulosus) origin ranavirus strains from independent disease outbreaksFehér, Enikő / Doszpoly, Andor / Horváth, Balázs / Marton, Szilvia / Forró, Barbara / Farkas, Szilvia L. / Bányai, Krisztián / Juhász, Tamás et al. | 2016
- 408
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Genetic diversity in Echinococcus shiquicus from the plateau pika (Ochotona curzoniae) in Darlag County, Qinghai, ChinaFan, Y. L. / Lou, Z. Z. / Li, L. / Yan, H. B. / Liu, Q. Y. / Zhan, F. / Li, J. Q. / Liu, C. N. / Cai, J. Z. / Lei, M. T. et al. | 2016
- 415
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HCV dispersal patterns among intravenous drug users (IDUs) in Athens metropolitan areaPapachristou, E. / Tsagkovits, A. / Zavitsanou, A. / Hatzakis, A. / Paraskevis, D. et al. | 2016
- 420
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Analyses of HTLV-1 sequences suggest interaction between ORF-I mutations and HAM/TSP outcomeBarreto, Fernanda Khouri / Khouri, Ricardo / Rego, Filipe Ferreira de Almeida / Santos, Luciane Amorim / Castro-Amarante, Maria Fernanda de / Bialuk, Izabela / Pise-Masison, Cynthia A. / Galvão-Castro, Bernardo / Gessain, Antoine / Jacobson, Steven et al. | 2016
- 426
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The transcriptomic analytical level determines the human monocyte-derived macrophage response toward either the infectious agent or the hostHolzmuller, P. / Nirdé, P. / Vezilier, F. d. / Chuchana, P. et al. | 2016
- 434
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Wing sexual dimorphism in Aedes fluviatilis (Diptera: Culicidae)Christe, R. d. / Wilke, A. B. / Vidal, P. O. / Marrelli, M. T. et al. | 2016
- 437
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Molecular evolution of respiratory syncytial virus subgroup A genotype NA1 and ON1 attachment glycoprotein (G) gene in central VietnamYoshihara, Keisuke / Le, Minh Nhat / Nagasawa, Koo / Tsukagoshi, Hiroyuki / Nguyen, Hien Anh / Toizumi, Michiko / Moriuchi, Hiroyuki / Hashizume, Masahiro / Ariyoshi, Koya / Dang, Duc Anh et al. | 2016
- 447
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Recombinant canine adenovirus type-2 expressing TgROP16 provides partial protection against acute Toxoplasma gondii infection in miceLi, Xiu-zhen / Lv, Lin / Zhang, Xu / Anchang, Kenneth Yongabi / Abdullahi, Auwalu Yusuf / Tu, Liqing / Wang, Xiaohu / Xia, Lijun / Zhang, Xiu-Xiang / Feng, Weili et al. | 2016
- 454
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Evolutionary history and spatiotemporal dynamics of DENV-1 genotype V in the Americasde Bruycker-Nogueira, F. / Mir, D. / dos Santos, F. B. / Bello, G. et al. | 2016
- 461
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Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestorRefrégier, Guislaine / Abadia, Edgar / Matsumoto, Tomoshige / Ano, Hiromi / Takashima, Tetsuya / Tsuyuguchi, Izuo / Aktas, Elif / Cömert, Füsun / Gomgnimbou, Michel Kireopori / Panaiotov, Stefan et al. | 2016
- 474
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Overview on mechanisms of isoniazid action and resistance in Mycobacterium tuberculosisUnissa, A. N. / Subbian, S. / Hanna, L. E. / Selvakumar, N. et al. | 2016
- ii
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Editorial Board| 2016