Statistical Inference from Multiple iTRAQ Experiments without Using Common Reference Standards (Unknown)
- New search for: Herbrich, Shelley M.
- New search for: Cole, Robert N.
- New search for: West, Keith P.
- New search for: Schulze, Kerry
- New search for: Yager, James D.
- New search for: Groopman, John D.
- New search for: Christian, Parul
- New search for: Wu, Lee
- New search for: O’Meally, Robert N.
- New search for: May, Damon H.
- New search for: McIntosh, Martin W.
- New search for: Ruczinski, Ingo
- New search for: Herbrich, Shelley M.
- New search for: Cole, Robert N.
- New search for: West, Keith P.
- New search for: Schulze, Kerry
- New search for: Yager, James D.
- New search for: Groopman, John D.
- New search for: Christian, Parul
- New search for: Wu, Lee
- New search for: O’Meally, Robert N.
- New search for: May, Damon H.
- New search for: McIntosh, Martin W.
- New search for: Ruczinski, Ingo
In:
Journal of Proteome Research
;
12
, 2
;
594-604
;
2013
- Article (Journal) / Electronic Resource
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Title:Statistical Inference from Multiple iTRAQ Experiments without Using Common Reference Standards
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Additional title:J. Proteome Res.
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Contributors:Herbrich, Shelley M. ( author ) / Cole, Robert N. ( author ) / West, Keith P. ( author ) / Schulze, Kerry ( author ) / Yager, James D. ( author ) / Groopman, John D. ( author ) / Christian, Parul ( author ) / Wu, Lee ( author ) / O’Meally, Robert N. ( author ) / May, Damon H. ( author )
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Published in:Journal of Proteome Research ; 12, 2 ; 594-604
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Publisher:
- New search for: American Chemical Society
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Publication date:2013-02-01
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ISSN:
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Coden:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:Unknown
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Keywords:
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Source:
Table of contents – Volume 12, Issue 2
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 547
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Trapping and Proteomic Identification of Cellular Substrates of the ClpP Protease in Staphylococcus aureusFeng, Jingyuan / Michalik, Stephan / Varming, Anders N. / Andersen, Julie H. / Albrecht, Dirk / Jelsbak, Lotte / Krieger, Stefanie / Ohlsen, Knut / Hecker, Michael / Gerth, Ulf et al. | 2013
- 559
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Proteomic Analysis of Early HIV‑1 Nucleoprotein ComplexesSchweitzer, Cameron J. / Jagadish, Teena / Haverland, Nicole / Ciborowski, Pawel / Belshan, Michael et al. | 2013
- 573
-
LC–MS/MS Characterization of O‑Glycosylation Sites and Glycan Structures of Human Cerebrospinal Fluid GlycoproteinsHalim, Adnan / Rüetschi, Ulla / Larson, Göran / Nilsson, Jonas et al. | 2013
- 585
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Quantitative Peptidomics for Discovery of Circadian-Related Peptides from the Rat Suprachiasmatic NucleusLee, Ji Eun / Zamdborg, Leonid / Southey, Bruce R. / Atkins, Norman / Mitchell, Jennifer W. / Li, Mingxi / Gillette, Martha U. / Kelleher, Neil L. / Sweedler, Jonathan V. et al. | 2013
- 594
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Statistical Inference from Multiple iTRAQ Experiments without Using Common Reference StandardsHerbrich, Shelley M. / Cole, Robert N. / West, Keith P. / Schulze, Kerry / Yager, James D. / Groopman, John D. / Christian, Parul / Wu, Lee / O’Meally, Robert N. / May, Damon H. et al. | 2013
- 605
-
PTRF/Cavin‑1 is Essential for Multidrug Resistance in Cancer CellsYi, Jae-Sung / Mun, Dong-Gi / Lee, Hyun / Park, Jun-sub / Lee, Jung-Woo / Lee, Jae-Seon / Kim, Su-Jin / Cho, Bong-Rae / Lee, Sang-Won / Ko, Young-Gyu et al. | 2013
- 615
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pNovo+: De Novo Peptide Sequencing Using Complementary HCD and ETD Tandem Mass SpectraChi, Hao / Chen, Haifeng / He, Kun / Wu, Long / Yang, Bing / Sun, Rui-Xiang / Liu, Jianyun / Zeng, Wen-Feng / Song, Chun-Qing / He, Si-Min et al. | 2013
- 626
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Prefractionation of Intact Proteins by Reversed-Phase and Anion-Exchange Chromatography for the Differential Proteomic Analysis of Saccharomyces cerevisiaeStobaugh, Jordan T. / Fague, Kaitlin M. / Jorgenson, James W. et al. | 2013
- 637
-
Cellular ERK Phospho-Form Profiles with Conserved Preference for a Switch-Like PatternHahn, Bettina / D’Alessandro, Lorenza Alice / Depner, Sofia / Waldow, Katharina / Boehm, Martin E. / Bachmann, Julie / Schilling, Marcel / Klingmüller, Ursula / Lehmann, Wolf D. et al. | 2013
- 647
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Comprehensive Proteomics Approach in Characterizing and Quantifying Allergenic Proteins from Northern Shrimp: Toward Better Occupational Asthma PreventionAbdel Rahman, Anas M. / Kamath, Sandip D. / Gagné, Sébastien / Lopata, Andreas L. / Helleur, Robert et al. | 2013
- 657
-
Label-Free Quantitative Proteomics Reveals Differentially Regulated Proteins in Experimental GingivitisBostanci, Nagihan / Ramberg, Per / Wahlander, Åsa / Grossman, Jonas / Jönsson, Daniel / Barnes, Virginia Monsul / Papapanou, Panos N. et al. | 2013
- 679
-
Feasibility of Identifying the Tobacco-related Global Metabolome in Blood by UPLC–QTOF-MSHsu, Ping-Ching / Zhou, Bin / Zhao, Yi / Ressom, Habtom W. / Cheema, Amrita K. / Pickworth, Wallace / Shields, Peter G. et al. | 2013
- 692
-
Intrarenal Metabolomic Investigation of Chronic Kidney Disease and its TGF-β1 Mechanism in Induced-adenine Rats using UPLC Q‑TOF/HSMS/MSEZhao, Ying-Yong / Cheng, Xian-Long / Wei, Feng / Bai, Xu / Tan, Xiao-Jie / Lin, Rui-Chao / Mei, Qibing et al. | 2013
- 692
-
Intrarenal Metabolomic Investigation of Chronic Kidney Disease and its TGF- beta 1 Mechanism in Induced-adenine Rats using UPLC Q-TOF/HSMS/MS^EZhao, Y.-Y. / Cheng, X.-L. / Wei, F. / Bai, X. / Tan, X.-J. / Lin, R.-C. / Mei, Q. et al. | 2013
- 704
-
Proteomic Analysis of an Unculturable Bacterial Endosymbiont (Blochmannia) Reveals High Abundance of Chaperonins and Biosynthetic EnzymesFan, Yongliang / Thompson, J. Will / Dubois, Laura G. / Moseley, M. Arthur / Wernegreen, Jennifer J. et al. | 2013
- 719
-
Protein Changes in Immunodepleted Cerebrospinal Fluid from a Transgenic Mouse Model of Alexander Disease Detected Using Mass SpectrometryCunningham, Robert / Jany, Paige / Messing, Albee / Li, Lingjun et al. | 2013
- 729
-
TiO2‑Based Phosphoproteomic Analysis of Schistosomes: Characterization of Phosphorylated Proteins in the Different Stages and Sex of Schistosoma japonicumCheng, Guofeng / Luo, Rong / Hu, Chao / Lin, Jiaojiao / Bai, Zhaofang / Zhang, Beimin / Wang, Hongxia et al. | 2013
- 743
-
Mass Spectrometric Evaluation of Neuropeptidomic Profiles upon Heat Stabilization Treatment of Neuroendocrine Tissues in CrustaceansSturm, Robert M. / Greer, Tyler / Woodards, Nicole / Gemperline, Erin / Li, Lingjun et al. | 2013
- 753
-
Quantitative Targeted Absolute Proteomics-Based Large-Scale Quantification of Proline-Hydroxylated α‑Fibrinogen in Plasma for Pancreatic Cancer DiagnosisYoneyama, Toshihiro / Ohtsuki, Sumio / Ono, Masaya / Ohmine, Ken / Uchida, Yasuo / Yamada, Tesshi / Tachikawa, Masanori / Terasaki, Tetsuya et al. | 2013
- 753
-
Quantitative Targeted Absolute Proteomics-Based Large-Scale Quantification of Proline-Hydroxylated alpha -Fibrinogen in Plasma for Pancreatic Cancer DiagnosisYoneyama, T. / Ohtsuki, S. / Ono, M. / Ohmine, K. / Uchida, Y. / Yamada, T. / Tachikawa, M. / Terasaki, T. et al. | 2013
- 763
-
Proteomics of Pyrococcus furiosus (Pfu): Identification of Extracted Proteins by Three Independent MethodsWong, Catherine C. L. / Cociorva, Daniel / Miller, Christine A. / Schmidt, Alexander / Monell, Craig / Aebersold, Ruedi / Yates, John R. et al. | 2013
- 771
-
Chicken Corneocyte Cross-Linked ProteomeRice, Robert H. / Winters, Brett R. / Durbin-Johnson, Blythe P. / Rocke, David M. et al. | 2013
- 777
-
High Resolution Clear Native Electrophoresis (hrCNE) Allows a Detailed Analysis of the Heterotrimeric Structure of Recombinant Neisseria meningitidis Porins Inserted into LiposomesFreixeiro, Paula / Diéguez-Casal, Ernesto / Costoya, Liliana / Marzoa, Juan / Ferreirós, Carlos M. / Criado, María Teresa / Sánchez, Sandra et al. | 2013
- 785
-
Shotgun Proteomic Analysis of the Mexican Lime Tree Infected with “Candidatus Phytoplasma aurantifolia”Monavarfeshani, Aboozar / Mirzaei, Mehdi / Sarhadi, Elham / Amirkhani, Ardeshir / Khayam Nekouei, Mojtaba / Haynes, Paul A. / Mardi, Mohsen / Salekdeh, Ghasem Hosseini et al. | 2013
- 796
-
Novel Twin-Arginine Translocation Pathway-Dependent Phenotypes of Bacillus subtilis Unveiled by Quantitative ProteomicsGoosens, Vivianne J. / Otto, Andreas / Glasner, Corinna / Monteferrante, Carmine C. / van der Ploeg, René / Hecker, Michael / Becher, Dörte / van Dijl, Jan Maarten et al. | 2013
- 808
-
Comparative Proteomics Analysis of Selenium Responses in Selenium-Enriched Rice GrainsWang, Yu-Dong / Wang, Xu / Ngai, Sai-ming / Wong, Yum-shing et al. | 2013
- 821
-
High-Throughput IgG Fc N‑Glycosylation Profiling by Mass Spectrometry of GlycopeptidesBaković, Maja Pučić / Selman, Maurice H. J. / Hoffmann, Marcus / Rudan, Igor / Campbell, Harry / Deelder, André M. / Lauc, Gordan / Wuhrer, Manfred et al. | 2013
- 832
-
Secretome Analyses of A beta ~1~-~4~2 Stimulated Hippocampal Astrocytes Reveal that CXCL10 is Involved in Astrocyte MigrationLai, W. / Wu, J. / Zou, X. / Xie, J. / Zhang, L. / Zhao, X. / Zhao, M. / Wang, Q. / Ji, J. et al. | 2013
- 832
-
Secretome Analyses of Aβ1–42 Stimulated Hippocampal Astrocytes Reveal that CXCL10 is Involved in Astrocyte MigrationLai, Wenjia / Wu, Jing / Zou, Xiao / Xie, Jian / Zhang, Liwei / Zhao, Xuyang / Zhao, Minzhi / Wang, Qingsong / Ji, Jianguo et al. | 2013
- 844
-
Comprehensive Profiling of Protein Lysine Acetylation in Escherichia coliZhang, Kai / Zheng, Shuzhen / Yang, Jeong Soo / Chen, Yue / Cheng, Zhongyi et al. | 2013
- 852
-
Metabolomic Study of Biochemical Changes in the Plasma and Urine of Primary Dysmenorrhea Patients Using UPLC–MS Coupled with a Pattern Recognition ApproachSu, Shulan / Duan, Jinao / Wang, Peijuan / Liu, Pei / Guo, Jianming / Shang, Erxin / Qian, Dawei / Tang, Yuping / Tang, Zongxiang et al. | 2013
- 866
-
Quantitative Phosphoproteomic Analysis of Early Alterations in Protein Phosphorylation by 2,3,7,8-Tetrachlorodibenzo‑p‑dioxinSchulz, Melanie / Brandner, Stefanie / Eberhagen, Carola / Eckardt-Schupp, Friederike / Larsen, Martin R. / Andrae, Ulrich et al. | 2013
- 883
-
Proteomic Analysis of Trypanosoma cruzi Secretome: Characterization of Two Populations of Extracellular Vesicles and Soluble ProteinsBayer-Santos, Ethel / Aguilar-Bonavides, Clemente / Rodrigues, Silas Pessini / Cordero, Esteban Maurício / Marques, Alexandre Ferreira / Varela-Ramirez, Armando / Choi, Hyungwon / Yoshida, Nobuko / da Silveira, José Franco / Almeida, Igor C. et al. | 2013
- 898
-
Comparison of GC-MS and NMR for Metabolite Profiling of Rice Subjected to Submergence StressBarding, Gregory A. / Béni, Szabolcs / Fukao, Takeshi / Bailey-Serres, Julia / Larive, Cynthia K. et al. | 2013
- 910
-
In-Source Fragmentation and the Sources of Partially Tryptic Peptides in Shotgun ProteomicsKim, Jong-Seo / Monroe, Matthew E. / Camp, David G. / Smith, Richard D. / Qian, Wei-Jun et al. | 2013
- 917
-
Top-down HPLC–ESI–MS detection of S‑Glutathionylated and S‑Cysteinylated Derivatives of Cystatin B and Its 1–53 and 54–98 Fragments in Whole Saliva of Human Preterm NewbornsIavarone, Federica / Cabras, Tiziana / Pisano, Elisabetta / Sanna, Maria Teresa / Nemolato, Sonia / Vento, Giovanni / Tirone, Chiara / Romagnoli, Costantino / Cordaro, Massimo / Fanos, Vassilios et al. | 2013
- 927
-
Proteome Wide Purification and Identification of O‑GlcNAc-Modified Proteins Using Click Chemistry and Mass SpectrometryHahne, Hannes / Sobotzki, Nadine / Nyberg, Tamara / Helm, Dominic / Borodkin, Vladimir S. / van Aalten, Daan M. F. / Agnew, Brian / Kuster, Bernhard et al. | 2013
- 937
-
A Versatile Mass Spectrometry-Based Method to Both Identify Kinase Client-Relationships and Characterize Signaling Network TopologyAhsan, Nagib / Huang, Yadong / Tovar-Mendez, Alejandro / Swatek, Kirby N. / Zhang, Jingfen / Miernyk, Ján A. / Xu, Dong / Thelen, Jay J. et al. | 2013
- 949
-
Proteome-wide Analysis of Amino Acid Variations That Influence Protein Lysine AcetylationSuo, Sheng-Bao / Qiu, Jian-Ding / Shi, Shao-Ping / Chen, Xiang / Huang, Shu-Yun / Liang, Ru-Ping et al. | 2013
- 959
-
1H HR-MAS NMR Spectroscopy of Tumor-Induced Local Metabolic “Field-Effects” Enables Colorectal Cancer Staging and PrognosticationJiménez, Beatriz / Mirnezami, Reza / Kinross, James / Cloarec, Olivier / Keun, Hector C. / Holmes, Elaine / Goldin, Robert D. / Ziprin, Paul / Darzi, Ara / Nicholson, Jeremy K. et al. | 2013
- 969
-
Following Healthy Pregnancy by Nuclear Magnetic Resonance (NMR) Metabolic Profiling of Human UrineDiaz, Sílvia O. / Barros, António S. / Goodfellow, Brian J. / Duarte, Iola F. / Carreira, Isabel M. / Galhano, Eulália / Pita, Cristina / Almeida, Maria do Céu / Gil, Ana M. et al. | 2013
- 980
-
Identification and Functional Validation of Caldesmon as a Potential Gastric Cancer Metastasis-associated ProteinHou, Qian / Tan, Hwee Tong / Lim, Kiat Hon / Lim, Teck Kwang / Khoo, Avery / Tan, Iain B.H. / Yeoh, Khay Guan / Chung, Maxey C. M. et al. | 2013
- 991
-
Gallic Acid Intake Induces Alterations to Systems Metabolism in RatsShi, Xiaohuo / Xiao, Chaoni / Wang, Yulan / Tang, Huiru et al. | 2013
- 1007
-
MS/MS of Synthetic Peptide Is Not Sufficient to Confirm New Types of Protein ModificationsLee, Sangkyu / Tan, Minjia / Dai, Lunzhi / Kwon, Oh Kwang / Yang, Jeong Soo / Zhao, Yingming / Chen, Yue et al. | 2013
- 1014
-
A Novel Prefractionation Method Combining Protein and Peptide Isoelectric Focusing in Immobilized pH Gradient StripsPernemalm, Maria / Lehtiö, Janne et al. | 2013
- 1020
-
Using Guanidine-Hydrochloride for Fast and Efficient Protein Digestion and Single-step Affinity-purification Mass SpectrometryPoulsen, Jon W. / Madsen, Christian T. / Young, Clifford / Poulsen, Flemming M. / Nielsen, Michael L. et al. | 2013
- 1031
-
Comparison of Protein Expression Ratios Observed by Sixplex and Duplex TMT Labeling MethodRauniyar, Navin / Gao, Benbo / McClatchy, Daniel B. / Yates, John R. et al. | 2013
- 1040
-
Combining Filter-Aided Sample Preparation and Pseudoshotgun Technology To Profile the Proteome of a Low Number of Early Passage Human Melanoma CellsMaurer, Margarita / Müller, André C. / Wagner, Christine / Huber, Marie L. / Rudashevskaya, Elena L. / Wagner, Stephan N. / Bennett, Keiryn L. et al. | 2013
- 1049
-
Identification and Quantification of Human DNA Repair Protein NEIL1 by Liquid Chromatography/Isotope-Dilution Tandem Mass SpectrometryReddy, Prasad T. / Jaruga, Pawel / Kirkali, Güldal / Tuna, Gamze / Nelson, Bryant C. / Dizdaroglu, Miral et al. | 2013
- 1062
-
When Target–Decoy False Discovery Rate Estimations Are Inaccurate and How to Spot InstancesChalkley, Robert J. et al. | 2013
- 1065
-
Correction to iTRAQ-based Quantitative Protein Expression Profiling and MRM Verification of Markers in Type 2 DiabetesKaur, Prabhjit / Rizk, Nasser M. / Ibrahim, Sereen / Younes, Noura / Uppal, Arushi / Dennis, Kevin / Karve, Tejaswita / Blakeslee, Kenneth / Kwagyan, John / Zirie, Mahmoud et al. | 2013