APPLICATIONS NOTE - Interactive InterPro-based comparisons of proteins in whole genomes (English)
- New search for: Kanapin, A.
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In:
Bioinformatics
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18
, 2
; 374
;
2002
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ISSN:
- Article (Journal) / Print
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Title:APPLICATIONS NOTE - Interactive InterPro-based comparisons of proteins in whole genomes
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Contributors:Kanapin, A. ( author ) / Apweiler, R. / Biswas, M. / Fleischmann, W. / Karavidopoulou, Y. / Kersey, P. / Kriventseva, E.V. / Mittard, V. / Mulder, N. / Oinn, T.
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Published in:Bioinformatics ; 18, 2 ; 374
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Publisher:
- New search for: Oxford Univ. Press
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Place of publication:Oxford
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Publication date:2002
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ISSN:
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ZDBID:
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Type of media:Article (Journal)
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Type of material:Print
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Language:English
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Keywords:
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Classification:
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Source:
Table of contents – Volume 18, Issue 2
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 84
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Annotating regulatory DNA based on man-mouse genomic comparisonDieterich, C. et al. | 2002
- 110
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A similarity-based method for genome-wide prediction of disease-relevant human genesFreudenberg, J. et al. | 2002
- 223
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EDITORIAL - Beyond the central dogmaHenikoff, S. et al. | 2002
- 226
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ORIGINAL PAPERS - A Bayesian approach to discriminate between alternative DNA sequence segmentationsHusmeier, D. et al. | 2002
- 235
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ORIGINAL PAPERS - A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosisSebban, M. et al. | 2002
- 244
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ORIGINAL PAPERS - Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence datasetZhang, Z. et al. | 2002
- 251
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ORIGINAL PAPERS - Adjustments and measures of differential expression for microarray dataTsodikov, A. et al. | 2002
- 261
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ORIGINAL PAPERS - Probabilistic Boolean networks: A rule-based uncertainty model for gene regulatory networksShmulevich, I. et al. | 2002
- 275
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ORIGINAL PAPERS - Mixture modelling of gene expression data from microarray experimentsGhosh, D. et al. | 2002
- 287
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ORIGINAL PAPERS - Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modelingToh, H. et al. | 2002
- 298
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ORIGINAL PAPERS - Extensive feature detection of N-terminal protein sorting signalsBannai, H. et al. | 2002
- 306
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ORIGINAL PAPERS - Predicting reliable regions in protein sequence alignmentsCline, M. et al. | 2002
- 315
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ORIGINAL PAPERS - Models(commat)Home: Distributed computing in bioinformatics using a screensaver based approachKrieger, E. et al. | 2002
- 319
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APPLICATIONS NOTE - A cluster validity framework for genome expression dataAzuaje, R. et al. | 2002
- 321
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APPLICATIONS NOTE - Avoiding cross hybridization by choosing nonredundant targets on cDNA arraysNielsen, H.B. et al. | 2002
- 323
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APPLICATIONS NOTE - DRAGON View: Information visualization for annotated microarray dataBouton, C.M.L.S. et al. | 2002
- 325
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APPLICATIONS NOTE - Tclass: Tumor classification system based on gene expression profileWuju, L. et al. | 2002
- 327
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APPLICATIONS NOTE - CGO: Utilizing and integrating gene expression microarray data in clinical research and data managementBumm, K. et al. | 2002
- 329
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APPLICATIONS NOTE - ISEApeaks: An Excel platform for GeneScan and Immunoscope data retrieval, management and analysisCollette, A. et al. | 2002
- 331
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APPLICATIONS NOTE - INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif SamplingThijs, G. et al. | 2002
- 333
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APPLICATIONS NOTE - PROMO: Detection of known transcription regulatory elements using species-tailored searchesMesseguer, X. et al. | 2002
- 335
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APPLICATIONS NOTE - GenomePixelizer -- A visualization program for comparative genomics within and between speciesKozik, A. et al. | 2002
- 337
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APPLICATIONS NOTE - Generating samples under a Wright-Fisher neutral model of genetic variationHudson, R.R. et al. | 2002
- 339
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APPLICATIONS NOTE - QTL Express: Mapping quantitative trait loci in simple and complex pedigreesSeaton, G. et al. | 2002
- 341
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APPLICATIONS NOTE - PATRI -- Paternity inference using genetic dataSignorovitch, J. et al. | 2002
- 343
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GCB2000 PAPERS - Translation initiation start prediction in human cDNAs with high accuracyHatzigeorgiou, A.G. et al. | 2002
- 351
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GCB2000 PAPERS - Exploring the pathway structure of metabolism: Decomposition into subnetworks and application to Mycoplasma pneumoniaeSchuster, S. et al. | 2002
- 362
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GCB2000 PAPERS - Structure motif discovery and mining the PDBJonassen, I. et al. | 2002
- 368
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GCB2000 PAPERS - The EBI SRS server -- Recent developmentsZdobnov, E.M. et al. | 2002
- 374
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APPLICATIONS NOTE - Interactive InterPro-based comparisons of proteins in whole genomesKanapin, A. et al. | 2002
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This section is devoted to papers presented at the GCB00 (German Conference on Bioinformatics), the Annual, International Conference on Computational Biosciences covering computational molecular biology and adjoining fields. Heidelberg, October 5-7, 2000.| 2002
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Generating samples under a Wright-Fisher neutral model of genetic variationHudson, Richard R. et al. | 2013
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EditorialLengauer, Thomas et al. | 2013
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The mutual information: Detecting and evaluating dependencies between variablesSteuer, R. et al. | 2013
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A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosisSebban, M. et al. | 2013
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Avoiding cross hybridization by choosing nonredundant targets on cDNA arraysNielsen, H. B. et al. | 2013
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Beyond the central dogmaHenikoff, Steven et al. | 2013
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Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniaeSchuster, S. et al. | 2013
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Identifying transcription factor binding sites through Markov chain optimizationEllrott, Kyle et al. | 2013
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Predicting reliable regions in protein sequence alignmentsCline, Melissa et al. | 2013
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Structure motif discovery and mining the PDBJonassen, Inge et al. | 2013
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Breakpoint medians and breakpoint phylogenies: A fixed-parameter approachGramm, Jens et al. | 2013
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A Bayesian approach to discriminate between alternative DNA sequence segmentationsHusmeier, Dirk et al. | 2013
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ISEApeaks: an Excel platform for GeneScan and Immunoscope data retrieval, management and analysisCollette, A. et al. | 2013
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The EBI SRS server--recent developmentsZdobnov, Evgeni M. et al. | 2013
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Interactive InterPro-based comparisons of proteins in whole genomesKanapin, A. et al. | 2013
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Contextual alignment of biological sequences (Extended abstract)Gambin, Anna et al. | 2013
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Selecting targets for therapeutic validation through differential protein expression using chromatography-mass spectrometryPatterson, Scott et al. | 2013
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Detecting genomic features under weak selective pressure: the example of codon usage in animals and plantsDuret, Laurent et al. | 2013
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Adjustments and measures of differential expression for microarray dataTsodikov, A. et al. | 2013
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Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networksShmulevich, Ilya et al. | 2013
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Models@Home: distributed computing in bioinformatics using a screensaver based approachKrieger, Elmar et al. | 2013
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A cluster validity framework for genome expression dataAzuaje, F. et al. | 2013
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Tclass: tumor classification system based on gene expression profileWuju, Li et al. | 2013
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PATRI--paternity inference using genetic dataSignorovitch, J. et al. | 2013
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Building and analysing genome-wide gene disruption networksRung, J. et al. | 2013
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Application of metabolomics to plant genotype discrimination using statistics and machine learningTaylor, Janet et al. | 2013
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Biological information: making it accessible and integrated (and trying to make sense of it)Hubbard, Tim et al. | 2013
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ECCB 2002 Organization| 2013
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An efficient and accurate distance based algorithm to reconstruct tandem duplication treesElemento, Olivier et al. | 2013
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Estonian Genome Project--before the take-off and take-offMetspalu, Andres et al. | 2013
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Stochastic pairwise alignmentsMückstein, U. et al. | 2013
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BioMiner--modeling, analyzing, and visualizing biochemical pathways and networksSirava, M. et al. | 2013
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Automated annotation of keywords for proteins related to mycoplasmataceae using machine learning techniquesBazzan, Ana L.C. et al. | 2013
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Modeling splicing sites with pairwise correlationsArita, Masanori et al. | 2013
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Extensive feature detection of N-terminal protein sorting signalsBannai, Hideo et al. | 2013
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Translation initiation start prediction in human cDNAs with high accuracyHatzigeorgiou, Artemis G. et al. | 2013
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Comparative genomics of microbial pathogens and symbiontsAndersson, Siv G.E. et al. | 2013
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Correlating gene promoters and expression in gene disruption experimentsPalin, Kimmo et al. | 2013
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Stochastic roadmap simulation for the study of ligand-protein interactionsApaydin, Mehmet Serkan et al. | 2013
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Building an automated classification of DNA-binding protein domainsPonomarenko, Julia V. et al. | 2013
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Theoretical analysis of alternative splice forms using computational methodsBoué, Stéphanie et al. | 2013
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DRAGON View: information visualization for annotated microarray dataBouton, Christopher M. L. S. et al. | 2013
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CGO: utilizing and integrating gene expression microarray data in clinical research and data managementBumm, Klaus et al. | 2013
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QTL Express: mapping quantitative trait loci in simple and complex pedigreesSeaton, George et al. | 2013
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Genome segmentation using piecewise constant intensity models and reversible jump MCMCSalmenkivi, Marko et al. | 2013
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A new distance measure for comparing sequence profiles based on path lengths along an entropy surfaceBenson, Gary et al. | 2013
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Feature subset selection for splice site predictionDegroeve, Sven et al. | 2013
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Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence datasetZhang, Zhengdong et al. | 2013
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Mixture modelling of gene expression data from microarray experimentsGhosh, Debashis et al. | 2013
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INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif SamplingThijs, Gert et al. | 2013
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PROMO: detection of known transcription regulatory elements using species-tailored searchesMesseguer, Xavier et al. | 2013
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An automatic block and spot indexing with k-nearest neighbors graph for microarray image analysisJung, Ho-Youl et al. | 2013
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ProClust: improved clustering of protein sequences with an extended graph-based approachPipenbacher, P. et al. | 2013
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Principles of protein-protein interactionsTeichmann, Sarah A. et al. | 2013
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Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatoricsAlthaus, Ernst et al. | 2013
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Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modelingToh, Hiroyuki et al. | 2013
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Proteome analysis based on motif statisticsNicodème, P. et al. | 2013
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An approximate matching algorithm for finding (sub-)optimal sequences in S-attributed grammarsWaldispühl, J. et al. | 2013
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Comparative analysis of protein interaction networksBork, Peer et al. | 2013
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GenomePixelizer--a visualization program for comparative genomics within and between speciesKozik, A. et al. | 2013
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Common intervals and sorting by reversals: a marriage of necessityBergeron, A. et al. | 2013
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Using robotics to fold proteins and dock ligandsBrutlag, Douglas et al. | 2013