CORAL: aligning conserved core regions across domain families (English)
- New search for: Fong, Jessica H.
- New search for: Marchler-Bauer, Aron
- New search for: Fong, Jessica H.
- New search for: Marchler-Bauer, Aron
In:
Bioinformatics
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25
, 15
;
1862-
;
2009
- Article (Journal) / Electronic Resource
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Title:CORAL: aligning conserved core regions across domain families
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Contributors:Fong, Jessica H. ( author ) / Marchler-Bauer, Aron ( author )
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Published in:Bioinformatics ; 25, 15 ; 1862-
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Publisher:
- New search for: Oxford University Press
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Publication date:2009-08-01
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 25, Issue 15
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1849
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Visual and statistical comparison of metagenomesMitra, Suparna / Klar, Bernhard / Huson, Daniel H. et al. | 2009
- 1856
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UTGB toolkit for personalized genome browsersSaito, Taro L. / Yoshimura, Jun / Sasaki, Shin / Ahsan, Budrul / Sasaki, Atsushi / Kuroshu, Reginaldo / Morishita, Shinichi et al. | 2009
- 1862
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CORAL: aligning conserved core regions across domain familiesFong, Jessica H. / Marchler-Bauer, Aron et al. | 2009
- 1869
-
Rapid detection, classification and accurate alignment of up to a million or more related protein sequencesNeuwald, Andrew F. et al. | 2009
- 1876
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Using dynamics-based comparisons to predict nucleic acid binding sites in proteins: an application to OB-fold domainsZen, Andrea / de Chiara, Cesira / Pastore, Annalisa / Micheletti, Cristian et al. | 2009
- 1884
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Predictor correlation impacts machine learning algorithms: implications for genomic studiesNicodemus, Kristin K. / Malley, James D. et al. | 2009
- 1891
-
Complex discovery from weighted PPI networksLiu, Guimei / Wong, Limsoon / Chua, Hon Nian et al. | 2009
- 1898
-
Hub genes with positive feedbacks function as master switches in developmental gene regulatory networksSeo, Chang H. / Kim, Jeong-Rae / Kim, Man-Sun / Cho, Kwang-Hyun et al. | 2009
- 1905
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Integrative analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: a non-linear model to predict abundance of undetected proteinsTorres-García, Wandaliz / Zhang, Weiwen / Runger, George C. / Johnson, Roger H. / Meldrum, Deirdre R. et al. | 2009
- 1915
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Using chemical organization theory for model checkingKaleta, Christoph / Richter, Stephan / Dittrich, Peter et al. | 2009
- 1923
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Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihoodRaue, A. / Kreutz, C. / Maiwald, T. / Bachmann, J. / Schilling, M. / Klingmüller, U. / Timmer, J. et al. | 2009
- 1930
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apLCMS--adaptive processing of high-resolution LC/MS dataYu, Tianwei / Park, Youngja / Johnson, Jennifer M. / Jones, Dean P. et al. | 2009
- 1937
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Highly accelerated feature detection in proteomics data sets using modern graphics processing unitsHussong, Rene / Gregorius, Barbara / Tholey, Andreas / Hildebrandt, Andreas et al. | 2009
- 1944
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Enhancing MEDLINE document clustering by incorporating MeSH semantic similarityZhu, Shanfeng / Zeng, Jia / Mamitsuka, Hiroshi et al. | 2009
- 1952
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A clustering approach for identification of enriched domains from histone modification ChIP-Seq dataZang, Chongzhi / Schones, Dustin E. / Zeng, Chen / Cui, Kairong / Zhao, Keji / Peng, Weiqun et al. | 2009
- 1959
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RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regionsRueda, Oscar M. / Diaz-Uriarte, Ramon et al. | 2009
- 1961
-
Generating linkage mapping files from Affymetrix SNP chip dataBahlo, M. / Bromhead, C. J. et al. | 2009
- 1963
-
InterMap3D: predicting and visualizing co-evolving protein residuesGouveia-Oliveira, Rodrigo / Roque, Francisco S. / Wernersson, Rasmus / Sicheritz-Ponten, Thomas / Sackett, Peter W. / Mølgaard, Anne / Pedersen, Anders G. et al. | 2009
- 1966
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SOAP2: an improved ultrafast tool for short read alignmentLi, Ruiqiang / Yu, Chang / Li, Yingrui / Lam, Tak-Wah / Yiu, Siu-Ming / Kristiansen, Karsten / Wang, Jun et al. | 2009
- 1968
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ABACAS: algorithm-based automatic contiguation of assembled sequencesAssefa, Samuel / Keane, Thomas M. / Otto, Thomas D. / Newbold, Chris / Berriman, Matthew et al. | 2009
- 1970
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Treevolution: visual analysis of phylogenetic treesSantamaría, Rodrigo / Therón, Roberto et al. | 2009
- 1972
-
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analysesCapella-Gutiérrez, Salvador / Silla-Martínez, José M. / Gabaldón, Toni et al. | 2009
- 1974
-
VARNA: Interactive drawing and editing of the RNA secondary structureDarty, Kévin / Denise, Alain / Ponty, Yann et al. | 2009
- 1976
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Ulla: a program for calculating environment-specific amino acid substitution tablesLee, Semin / Blundell, Tom L. et al. | 2009
- 1978
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GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genomeFolkersen, Lasse / Diez, Diego / Wheelock, Craig E. / Haeggström, Jesper Z. / Goto, Susumu / Eriksson, Per / Gabrielsen, Anders et al. | 2009
- 1980
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A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMaDupierris, Véronique / Masselon, Christophe / Court, Magali / Kieffer-Jaquinod, Sylvie / Bruley, Christophe et al. | 2009
- 1982
-
TANDEM: integrating automated allele binning into genetics and genomics workflowsMatschiner, Michael / Salzburger, Walter et al. | 2009
- 1984
-
CATMAID: collaborative annotation toolkit for massive amounts of image dataSaalfeld, Stephan / Cardona, Albert / Hartenstein, Volker / Tomancák, Pavel et al. | 2009
- 1987
-
CycSim--an online tool for exploring and experimenting with genome-scale metabolic modelsLe Fèvre, F. / Smidtas, S. / Combe, C. / Durot, M. / d'Alché-Buc, Florence / Schachter, V. et al. | 2009
- 1989
-
MetNetAligner: a web service tool for metabolic network alignmentsCheng, Qiong / Harrison, Robert / Zelikovsky, Alexander et al. | 2009
- 1991
-
DIANA-mirPath: Integrating human and mouse microRNAs in pathwaysPapadopoulos, G. L. / Alexiou, P. / Maragkakis, M. / Reczko, M. / Hatzigeorgiou, A. G. et al. | 2009
- 1994
-
jClust: a clustering and visualization toolboxPavlopoulos, Georgios A. / Moschopoulos, Charalampos N. / Hooper, Sean D. / Schneider, Reinhard / Kossida, Sophia et al. | 2009
- 1997
-
U-Compare: share and compare text mining tools with UIMAKano, Yoshinobu / Baumgartner, William A. / McCrohon, Luke / Ananiadou, Sophia / Cohen, K. Bretonnel / Hunter, Lawrence / Tsujii, Jun'ichi et al. | 2009