Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment (English)
- New search for: Peterson, Eric L.
- New search for: Kondev, Jané
- New search for: Theriot, Julie A.
- New search for: Phillips, Rob
- New search for: Peterson, Eric L.
- New search for: Kondev, Jané
- New search for: Theriot, Julie A.
- New search for: Phillips, Rob
In:
Bioinformatics
;
25
, 11
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1356-
;
2009
- Article (Journal) / Electronic Resource
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Title:Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment
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Contributors:Peterson, Eric L. ( author ) / Kondev, Jané ( author ) / Theriot, Julie A. ( author ) / Phillips, Rob ( author )
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Published in:Bioinformatics ; 25, 11 ; 1356-
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Publisher:
- New search for: Oxford University Press
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Publication date:2009-06-01
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ISSN:
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DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 25, Issue 11
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- 1345
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In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial controlLindlöf, Angelica / Bräutigam, Marcus / Chawade, Aakash / Olsson, Olof / Olsson, Björn et al. | 2009
- 1349
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Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organismsKoressaar, Triinu / Jõers, Kai / Remm, Maido et al. | 2009
- 1356
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Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignmentPeterson, Eric L. / Kondev, Jané / Theriot, Julie A. / Phillips, Rob et al. | 2009
- 1363
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CloudBurst: highly sensitive read mapping with MapReduceSchatz, Michael C. et al. | 2009
- 1370
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Many-core algorithms for statistical phylogeneticsSuchard, Marc A. / Rambaut, Andrew et al. | 2009
- 1377
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A web application to perform linkage disequilibrium and linkage analyses on a computational gridHernández-Sánchez, Jules / Grunchec, Jean-Alain / Knott, Sara et al. | 2009
- 1384
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Variable slope normalization of reverse phase protein arraysNeeley, E. Shannon / Kornblau, Steven M. / Coombes, Kevin R. / Baggerly, Keith A. et al. | 2009
- 1390
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Network-based multiple locus linkage analysis of expression traitsPan, Wei et al. | 2009
- 1397
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Integrating shotgun proteomics and mRNA expression data to improve protein identificationRamakrishnan, Smriti R. / Vogel, Christine / Prince, John T. / Wang, Rong / Li, Zhihua / Penalva, Luiz O. / Myers, Margaret / Marcotte, Edward M. / Miranker, Daniel P. et al. | 2009
- 1404
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KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathwaysSpasic, Irena / Simeonidis, Evangelos / Messiha, Hanan L. / Paton, Norman W. / Kell, Douglas B. et al. | 2009
- 1412
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MeSH Up: effective MeSH text classification for improved document retrievalTrieschnigg, Dolf / Pezik, Piotr / Lee, Vivian / de Jong, Franciska / Kraaij, Wessel / Rebholz-Schuhmann, Dietrich et al. | 2009
- 1419
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CNVVdb: a database of copy number variations across vertebrate genomesChen, Feng-Chi / Chen, Yen-Zho / Chuang, Trees-Juen et al. | 2009
- 1422
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Biopython: freely available Python tools for computational molecular biology and bioinformaticsCock, Peter J. A. / Antao, Tiago / Chang, Jeffrey T. / Chapman, Brad A. / Cox, Cymon J. / Dalke, Andrew / Friedberg, Iddo / Hamelryck, Thomas / Kauff, Frank / Wilczynski, Bartek et al. | 2009
- 1424
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ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatchesJung Kim, You / Teletia, Nikhil / Ruotti, Victor / Maher, Christopher A. / Chinnaiyan, Arul M. / Stewart, Ron / Thomson, James A. / Patel, Jignesh M. et al. | 2009
- 1426
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Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templatesMatthew Ward, R. / Venner, Eric / Daines, Bryce / Murray, Stephen / Erdin, Serkan / Kristensen, David M. / Lichtarge, Olivier et al. | 2009
- 1428
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Hooke: an open software platform for force spectroscopySandal, Massimo / Benedetti, Fabrizio / Brucale, Marco / Gomez-Casado, Alberto / Samorì, Bruno et al. | 2009
- 1431
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LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structuresRyan, Michael / Diekhans, Mark / Lien, Stephanie / Liu, Yun / Karchin, Rachel et al. | 2009
- 1433
-
MICAlign: a sequence-to-structure alignment tool integrating multiple sources of information in conditional random fieldsXia, Xuefeng / Zhang, Song / Su, Yu / Sun, Zhirong et al. | 2009
- 1435
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PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknotsByun, Yanga / Han, Kyungsook et al. | 2009
- 1438
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BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis serverGeeleher, Paul / Morris, Dermot / Hinde, John P. / Golden, Aaron et al. | 2009
- 1440
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A novel parallel approach to the likelihood-based estimation of admixture in population geneticsGiovannini, Ambra / Zanghirati, Gaetano / Beaumont, Mark A. / Chikhi, Lounès / Barbujani, Guido et al. | 2009
- 1442
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SimMLST: simulation of multi-locus sequence typing data under a neutral modelDidelot, Xavier / Lawson, Daniel / Falush, Daniel et al. | 2009
- 1445
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Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotypeWatkinson, John / Anastassiou, Dimitris et al. | 2009
- 1447
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Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.xCarey, Vincent J. / Davis, Adam R. / Lawrence, Michael F. / Gentleman, Robert / Raby, Benjamin A. et al. | 2009
- 1449
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IGG3: a tool to rapidly integrate large genotype datasets for whole-genome imputation and individual-level meta-analysisLi, Miao-Xin / Jiang, Lin / Kao, Patrick Yu-Ping / Sham, Pak-C. / Song, You-Qiang et al. | 2009
- 1451
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DnaSP v5: a software for comprehensive analysis of DNA polymorphism dataLibrado, P. / Rozas, J. et al. | 2009
- 1453
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GNU MCSim: Bayesian statistical inference for SBML-coded systems biology modelsBois, Frédéric Y. et al. | 2009
- 1455
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SBML2LATEX: Conversion of SBML files into human-readable reportsDräger, Andreas / Planatscher, Hannes / Motsou Wouamba, Dieudonné / Schröder, Adrian / Hucka, Michael / Endler, Lukas / Golebiewski, Martin / Müller, Wolfgang / Zell, Andreas et al. | 2009
- 1457
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GetBonNie for building, analyzing and sharing rule-based modelsHu, Bin / Matthew Fricke, G. / Faeder, James R. / Posner, Richard G. / Hlavacek, William S. et al. | 2009
- 1461
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FDR made easy in differential feature discovery and correlation analysesLing, Xuefeng Bruce / Cohen, Harvey / Jin, Joseph / Lau, Irwin / Schilling, James et al. | 2009
- 1463
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Globally optimal stitching of tiled 3D microscopic image acquisitionsPreibisch, Stephan / Saalfeld, Stephan / Tomancak, Pavel et al. | 2009
- 1466
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pySolo: a complete suite for sleep analysis in DrosophilaGilestro, Giorgio F. / Cirelli, Chiara et al. | 2009
- 1468
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ViaComplex: software for landscape analysis of gene expression networks in genomic contextCastro, Mauro A. A. / Filho, José L. Rybarczyk / Dalmolin, Rodrigo J. S. / Sinigaglia, Marialva / Moreira, José C. F. / Mombach, José C. M. / de Almeida, Rita M. C. et al. | 2009
- 1470
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KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductorZhang, Jitao David / Wiemann, Stefan et al. | 2009
- 1472
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StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometryvan Breukelen, Bas / van den Toorn, Henk W. P. / Drugan, Madalina M. / Heck, Albert J. R. et al. | 2009
- 1474
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Accurate identification of orthologous segments among multiple genomesHachiya, Tsuyoshi / Osana, Yasunori / Popendorf, Kris / Sakakibara, Yasubumi et al. | 2009