Primer3Plus, an enhanced web interface to Primer3 (English)
Free access
- New search for: Untergasser, Andreas
- New search for: Nijveen, Harm
- New search for: Rao, Xiangyu
- New search for: Bisseling, Ton
- New search for: Geurts, René
- New search for: Leunissen, Jack A.M.
- New search for: Untergasser, Andreas
- New search for: Nijveen, Harm
- New search for: Rao, Xiangyu
- New search for: Bisseling, Ton
- New search for: Geurts, René
- New search for: Leunissen, Jack A.M.
In:
Nucleic acids research
;
35
, suppl_2
;
W71-
;
2007
- Article (Journal) / Electronic Resource
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Title:Primer3Plus, an enhanced web interface to Primer3
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Contributors:Untergasser, Andreas ( author ) / Nijveen, Harm ( author ) / Rao, Xiangyu ( author ) / Bisseling, Ton ( author ) / Geurts, René ( author ) / Leunissen, Jack A.M. ( author )
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Published in:Nucleic acids research ; 35, suppl_2 ; W71-
-
Publisher:
- New search for: Oxford University Press
-
Publication date:2007-07-13
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ISSN:
-
DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 35, Issue suppl_2
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- W1
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EditorialBenson, Gary et al. | 2007
- W3
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Conducting Research on the Web: 2007 Update for the Bioinformatics Links DirectoryFox, Joanne A. / McMillan, Scott / Ouellette, B. F. Francis et al. | 2007
- W6
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Web Services at the European Bioinformatics InstituteLabarga, Alberto / Valentin, Franck / Anderson, Mikael / Lopez, Rodrigo et al. | 2007
- W12
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eTBLAST: a web server to identify expert reviewers, appropriate journals and similar publicationsErrami, Mounir / Wren, Jonathan D. / Hicks, Justin M. / Garner, Harold R. et al. | 2007
- W16
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CARGO: a web portal to integrate customized biological informationCases, Ildefonso / Pisano, David G. / Andres, Eduardo / Carro, Angel / Fernández, José M. / Gómez-López, Gonzalo / Rodriguez, Jose M. / Vera, Jaime F. / Valencia, Alfonso / Rojas, Ana M. et al. | 2007
- W21
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iHOP web servicesFernández, José M. / Hoffmann, Robert / Valencia, Alfonso et al. | 2007
- W27
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Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysisGlanville, Jake Gunn / Kirshner, Dan / Krishnamurthy, Nandini / Sjölander, Kimmen et al. | 2007
- W33
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MultiPhyl: a high-throughput phylogenomics webserver using distributed computingKeane, Thomas M. / Naughton, Thomas J. / McInerney, James O. et al. | 2007
- W38
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Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomicsTárraga, Joaquín / Medina, Ignacio / Arbiza, Leonardo / Huerta-Cepas, Jaime / Gabaldón, Toni / Dopazo, Joaquín / Dopazo, Hernán et al. | 2007
- W43
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OligoCalc: an online oligonucleotide properties calculatorKibbe, Warren A. et al. | 2007
- W47
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RF-DYMHC: detecting the yeast meiotic recombination hotspots and coldspots by random forest model using gapped dinucleotide composition featuresJiang, Peng / Wu, Haonan / Wei, Jiawei / Sang, Fei / Sun, Xiao / Lu, Zuhong et al. | 2007
- W52
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CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeatsGrissa, Ibtissem / Vergnaud, Gilles / Pourcel, Christine et al. | 2007
- W58
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REPK: an analytical web server to select restriction endonucleases for terminal restriction fragment length polymorphism analysisCollins, Roy Eric / Rocap, Gabrielle et al. | 2007
- W63
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PrimerZ: streamlined primer design for promoters, exons and human SNPsTsai, Ming-Fang / Lin, Yi-Jung / Cheng, Yu-Chang / Lee, Kuo-Hsi / Huang, Cheng-Chih / Chen, Yuan-Tsong / Yao, Adam et al. | 2007
- W66
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NTMG (N-terminal Truncated Mutants Generator for cDNA): an automatic multiplex PCR assays design for generating various N-terminal truncated cDNA mutantsChen, Yung-Fu / Chen, Rung-Ching / Tseng, Lin-Yu / Lin, Elong / Chan, Yung-Kuan / Pan, Ren-Hao et al. | 2007
- W71
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Primer3Plus, an enhanced web interface to Primer3Untergasser, Andreas / Nijveen, Harm / Rao, Xiangyu / Bisseling, Ton / Geurts, René / Leunissen, Jack A.M. et al. | 2007
- W75
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Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suiteDíaz-Uriarte, Ramón / Alibés, Andreu / Morrissey, Edward R. / Cañada, Andrés / Rueda, Oscar M. / Neves, Mariana L. et al. | 2007
- W81
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ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profilingConde, Lucía / Montaner, David / Burguet-Castell, Jordi / Tárraga, Joaquín / Medina, Ignacio / Al-Shahrour, Fátima / Dopazo, Joaquín et al. | 2007
- W86
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MAGMA: analysis of two-channel microarrays made easyRehrauer, Hubert / Zoller, Stefan / Schlapbach, Ralph et al. | 2007
- W91
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FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experimentsAl-Shahrour, Fátima / Minguez, Pablo / Tárraga, Joaquín / Medina, Ignacio / Alloza, Eva / Montaner, David / Dopazo, Joaquín et al. | 2007
- W97
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MobilomeFINDER: web-based tools for in silico and experimental discovery of bacterial genomic islandsOu, Hong-Yu / He, Xinyi / Harrison, Ewan M. / Kulasekara, Bridget R. / Thani, Ali Bin / Kadioglu, Aras / Lory, Stephen / Hinton, Jay C. D. / Barer, Michael R. / Deng, Zixin et al. | 2007
- W105
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Cross-species microarray analysis with the OSCAR system suggests an INSR->Pax6->NQO1 neuro-protective pathway in aging and Alzheimer's diseaseLu, Yue / He, Xin / Zhong, Sheng et al. | 2007
- W115
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QuickSNP: an automated web server for selection of tagSNPsGrover, Deepak / Woodfield, Alonzo S. / Verma, Ranjana / Zandi, Peter P. / Levinson, Douglas F. / Potash, James B. et al. | 2007
- W121
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FGF: A web tool for Fishing Gene Family in a whole genome databaseZheng, Hongkun / Shi, Junjie / Fang, Xiaodong / Li, Yuan / Vang, Søren / Fan, Wei / Wang, Junyi / Zhang, Zhang / Wang, Wen / Kristiansen, Karsten et al. | 2007
- W126
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OPTIMIZER: a web server for optimizing the codon usage of DNA sequencesPuigbò, Pere / Guzmán, Eduard / Romeu, Antoni / Garcia-Vallvé, Santiago et al. | 2007
- W132
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CodonO: codon usage bias analysis within and across genomesAngellotti, Michael C. / Bhuiyan, Shafquat B. / Chen, Guorong / Wan, Xiu-Feng et al. | 2007
- W137
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WebTraceMiner: a web service for processing and mining EST sequence trace filesLiang, Chun / Wang, Gang / Liu, Lin / Ji, Guoli / Liu, Yuansheng / Chen, Jinqiao / Webb, Jason S. / Reese, Greg / Dean, Jeffrey F. D. et al. | 2007
- W143
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ESTExplorer: an expressed sequence tag (EST) assembly and annotation platformNagaraj, Shivashankar H. / Deshpande, Nandan / Gasser, Robin B. / Ranganathan, Shoba et al. | 2007
- W148
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Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequenceMitchell, Rowan A. C. / Castells-Brooke, Nathalie / Taubert, Jan / Verrier, Paul J. / Leader, David J. / Rawlings, Christopher J. et al. | 2007
- W152
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GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene databaseZhang, Yan / Luoh, Shiuh-Ming / Hon, Lawrence S. / Baertsch, Robert / Wood, William I. / Zhang, Zemin et al. | 2007
- W159
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ESTpass: a web-based server for processing and annotating expressed sequence tag (EST) sequencesLee, Byungwook / Hong, Taehui / Byun, Sang Jin / Woo, Taeha / Choi, Yoon Jeong et al. | 2007
- W163
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SAGExplore: a web server for unambiguous tag mapping in serial analysis of gene expression oriented to gene discovery and annotationNorambuena, Tomás / Malig, Rodrigo / Melo, Francisco et al. | 2007
- W169
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DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene listsHuang, Da Wei / Sherman, Brad T. / Tan, Qina / Kir, Joseph / Liu, David / Bryant, David / Guo, Yongjian / Stephens, Robert / Baseler, Michael W. / Lane, H. Clifford et al. | 2007
- W176
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PathExpress: a web-based tool to identify relevant pathways in gene expression dataGoffard, Nicolas / Weiller, Georg et al. | 2007
- W182
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KAAS: an automatic genome annotation and pathway reconstruction serverMoriya, Yuki / Itoh, Masumi / Okuda, Shujiro / Yoshizawa, Akiyasu C. / Kanehisa, Minoru et al. | 2007
- W186
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GeneTrail--advanced gene set enrichment analysisBackes, Christina / Keller, Andreas / Kuentzer, Jan / Kneissl, Benny / Comtesse, Nicole / Elnakady, Yasser A. / Müller, Rolf / Meese, Eckart / Lenhof, Hans-Peter et al. | 2007
- W193
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g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experimentsReimand, Jüri / Kull, Meelis / Peterson, Hedi / Hansen, Jaanus / Vilo, Jaak et al. | 2007
- W201
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MADAP, a flexible clustering tool for the interpretation of one-dimensional genome annotation dataSchmid, Christoph D. / Sengstag, Thierry / Bucher, Philipp / Delorenzi, Mauro et al. | 2007
- W206
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Onto-Tools: new additions and improvements in 2006Khatri, Purvesh / Voichita, Calin / Kattan, Khalid / Ansari, Nadeem / Khatri, Avani / Georgescu, Constantin / Tarca, Adi L. / Draghici, Sorin et al. | 2007
- W212
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Update of the G2D tool for prioritization of gene candidates to inherited diseasesPerez-Iratxeta, Carolina / Bork, Peer / Andrade-Navarro, Miguel A. et al. | 2007
- W217
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WebMOTIFS: automated discovery, filtering and scoring of DNA sequence motifs using multiple programs and Bayesian approachesRomer, Katherine A. / Kayombya, Guy-Richard / Fraenkel, Ernest et al. | 2007
- W221
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MYBS: a comprehensive web server for mining transcription factor binding sites in yeastTsai, Huai-Kuang / Chou, Meng-Yuan / Shih, Ching-Hua / Huang, Grace Tzu-Wei / Chang, Tien-Hsien / Li, Wen-Hsiung et al. | 2007
- W227
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Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regionsOkumura, Toshiyuki / Makiguchi, Hiroki / Makita, Yuko / Yamashita, Riu / Nakai, Kenta et al. | 2007
- W232
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The Gibbs Centroid SamplerThompson, William A. / Newberg, Lee A. / Conlan, Sean / McCue, Lee Ann / Lawrence, Charles E. et al. | 2007
- W238
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PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysisChang, Li-Wei / Fontaine, Burr R. / Stormo, Gary D. / Nagarajan, Rakesh et al. | 2007
- W245
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oPOSSUM: integrated tools for analysis of regulatory motif over-representationHo Sui, Shannan J. / Fulton, Debra L. / Arenillas, David J. / Kwon, Andrew T. / Wasserman, Wyeth W. et al. | 2007
- W253
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STAMP: a web tool for exploring DNA-binding motif similaritiesMahony, Shaun / Benos, Panayiotis V. et al. | 2007
- W259
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SCOPE: a web server for practical de novo motif discoveryCarlson, Jonathan M. / Chakravarty, Arijit / DeZiel, Charles E. / Gross, Robert H. et al. | 2007
- W265
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LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposonsXu, Zhao / Wang, Hao et al. | 2007
- W269
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RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signaturesLucier, Jean-François / Perreault, Jonathan / Noël, Jean-François / Boire, Gilles / Perreault, Jean-Pierre et al. | 2007
- W275
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FluGenome: a web tool for genotyping influenza A virusLu, Guoqing / Rowley, Thaine / Garten, Rebecca / Donis, Ruben O. et al. | 2007
- W280
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FLAN: a web server for influenza virus genome annotationBao, Yiming / Bolotov, Pavel / Dernovoy, Dmitry / Kiryutin, Boris / Tatusova, Tatiana et al. | 2007
- W285
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SplicePort--An interactive splice-site analysis toolDogan, Rezarta Islamaj / Getoor, Lise / Wilbur, W. John / Mount, Stephen M. et al. | 2007
- W292
-
BIPASS: BioInformatics Pipeline Alternative Splicing ServicesLacroix, Zoé / Legendre, Christophe / Raschid, Louiqa / Snyder, Ben et al. | 2007
- W297
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ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasetsFoissac, Sylvain / Sammeth, Michael et al. | 2007
- W300
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RADAR: a web server for RNA data analysis and researchKhaladkar, Mugdha / Bellofatto, Vivian / Wang, Jason T. L. / Tian, Bin / Shapiro, Bruce A. et al. | 2007
- W305
-
RNAbor: a web server for RNA structural neighborsFreyhult, Eva / Moulton, Vincent / Clote, Peter et al. | 2007
- W310
-
INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraintsBusch, Anke / Backofen, Rolf et al. | 2007
- W314
-
RSRE: RNA structural robustness evaluatorShu, Wenjie / Bo, Xiaochen / Zheng, Zhiqiang / Wang, Shengqi et al. | 2007
- W320
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pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windowsReeder, Jens / Steffen, Peter / Giegerich, Robert et al. | 2007
- W325
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taveRNA: a web suite for RNA algorithms and applicationsAksay, Cagri / Salari, Raheleh / Karakoc, Emre / Alkan, Can / Sahinalp, S. Cenk et al. | 2007
- W330
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RNA Movies 2: sequential animation of RNA secondary structuresKaiser, Alexander / Krüger, Jan / Evers, Dirk J. et al. | 2007
- W335
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The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structuresGruber, Andreas R. / Neuböck, Richard / Hofacker, Ivo L. / Washietl, Stefan et al. | 2007
- W339
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MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined featuresJiang, Peng / Wu, Haonan / Wang, Wenkai / Ma, Wei / Sun, Xiao / Lu, Zuhong et al. | 2007
- W345
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CPC: assess the protein-coding potential of transcripts using sequence features and support vector machineKong, Lei / Zhang, Yong / Ye, Zhi-Qiang / Liu, Xiao-Qiao / Zhao, Shu-Qi / Wei, Liping / Gao, Ge et al. | 2007
- W350
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TFAM 1.0: an online tRNA function classifierTåquist, Helena / Cui, Yuanyuan / Ardell, David H. et al. | 2007
- W354
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DOMAC: an accurate, hybrid protein domain prediction serverCheng, Jianlin et al. | 2007
- W357
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PI2PE: protein interface/interior prediction engineTjong, Harianto / Qin, Sanbo / Zhou, Huan-Xiang et al. | 2007
- W363
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M4T: a comparative protein structure modeling serverFernandez-Fuentes, Narcis / Madrid-Aliste, Carlos J. / Rai, Brajesh Kumar / Fajardo, J. Eduardo / Fiser, András et al. | 2007
- W369
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Pcons.net: protein structure prediction meta serverWallner, Björn / Larsson, Per / Elofsson, Arne et al. | 2007
- W375
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MolProbity: all-atom contacts and structure validation for proteins and nucleic acidsDavis, Ian W. / Leaver-Fay, Andrew / Chen, Vincent B. / Block, Jeremy N. / Kapral, Gary J. / Wang, Xueyi / Murray, Laura W. / Arendall, W. Bryan / Snoeyink, Jack / Richardson, Jane S. et al. | 2007
- W384
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Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathwaysUzun, Alper / Leslin, Chesley M. / Abyzov, Alexej / Ilyin, Valentin et al. | 2007
- W393
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DBAli tools: mining the protein structure spaceMarti-Renom, Marc A. / Pieper, Ursula / Madhusudhan, M. S. / Rossi, Andrea / Eswar, Narayanan / Davis, Fred P. / Al-Shahrour, Fátima / Dopazo, Joaquín / Sali, Andrej et al. | 2007
- W398
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eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shapeKinoshita, Kengo / Murakami, Yoichi / Nakamura, Haruki et al. | 2007
- W403
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NQ-Flipper: recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structuresWeichenberger, Christian X. / Sippl, Manfred J. et al. | 2007
- W407
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ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteinsWiederstein, Markus / Sippl, Manfred J. et al. | 2007
- W411
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QSCOP-BLAST--fast retrieval of quantified structural information for protein sequences of unknown structureSuhrer, Stefan J. / Gruber, Markus / Sippl, Manfred J. et al. | 2007
- W416
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3dLOGO: a web server for the identification, analysis and use of conserved protein substructuresVia, Allegra / Peluso, Daniele / Gherardini, Pier Federico / de Rinaldis, Emanuele / Colombo, Teresa / Ausiello, Gabriele / Helmer-Citterich, Manuela et al. | 2007
- W420
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pKNOT: the protein KNOT web serverLai, Yan-Long / Yen, Shih-Chung / Yu, Sung-Huan / Hwang, Jenn-Kang et al. | 2007
- W425
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Protein knot server: detection of knots in protein structuresKolesov, Grigory / Virnau, Peter / Kardar, Mehran / Mirny, Leonid A. et al. | 2007
- W429
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Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web serverKäll, Lukas / Krogh, Anders / Sonnhammer, Erik L.L. et al. | 2007
- W433
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MyHits: improvements to an interactive resource for analyzing protein sequencesPagni, Marco / Ioannidis, Vassilios / Cerutti, Lorenzo / Zahn-Zabal, Monique / Jongeneel, C. Victor / Hau, Jörg / Martin, Olivier / Kuznetsov, Dmitri / Falquet, Laurent et al. | 2007
- W438
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fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamiliesTung, Chi-Hua / Yang, Jinn-Moon et al. | 2007
- W444
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ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZdel Val, C. / Ernst, P. / Falkenhahn, M / Fladerer, C. / Glatting, K. H. / Suhai, S. / Hotz-Wagenblatt, A. et al. | 2007
- W451
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SH3-Hunter: discovery of SH3 domain interaction sites in proteinsFerraro, Enrico / Peluso, Daniele / Via, Allegra / Ausiello, Gabriele / Helmer-Citterich, Manuela et al. | 2007
- W455
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The SLiMDisc server: short, linear motif discovery in proteinsDavey, Norman E. / Edwards, Richard J. / Shields, Denis C. et al. | 2007
- W460
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PrDOS: prediction of disordered protein regions from amino acid sequenceIshida, Takashi / Kinoshita, Kengo et al. | 2007
- W465
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iPDA: integrated protein disorder analyzerSu, Chung-Tsai / Chen, Chien-Yu / Hsu, Chen-Ming et al. | 2007
- W473
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PIC: Protein Interactions CalculatorTina, K. G. / Bhadra, R. / Srinivasan, N. et al. | 2007
- W477
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MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscapeFranklin, Joel / Koehl, Patrice / Doniach, Sebastian / Delarue, Marc et al. | 2007
- W483
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PMG: online generation of high-quality molecular pictures and storyboarded animationsAutin, Ludovic / Tufféry, Pierre et al. | 2007
- W489
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siteFiNDER|3D: a web-based tool for predicting the location of functional sites in proteinsInnis, C. Axel et al. | 2007
- W495
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Sequence harmony: detecting functional specificity from alignmentsFeenstra, K. Anton / Pirovano, Walter / Krab, Klaas / Heringa, Jaap et al. | 2007
- W499
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FRalanyzer: a tool for functional analysis of fold-recognition sequence-structure alignmentsSaini, Harpreet Kaur / Fischer, Daniel et al. | 2007
- W503
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PAR-3D: a server to predict protein active site residuesGoyal, Kshama / Mohanty, Debasisa / Mande, Shekhar C. et al. | 2007
- W506
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Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approachStern, Adi / Doron-Faigenboim, Adi / Erez, Elana / Martz, Eric / Bacharach, Eran / Pupko, Tal et al. | 2007
- W512
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A server and database for dipole moments of proteinsFelder, Clifford E. / Prilusky, Jaime / Silman, Israel / Sussman, Joel L. et al. | 2007
- W522
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PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulationsDolinsky, Todd J. / Czodrowski, Paul / Li, Hui / Nielsen, Jens E. / Jensen, Jan H. / Klebe, Gerhard / Baker, Nathan A. et al. | 2007
- W526
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Patch Finder Plus (PFplus): A web server for extracting and displaying positive electrostatic patches on protein surfacesShazman, Shula / Celniker, Gershon / Haber, Omer / Glaser, Fabian / Mandel-Gutfreund, Yael et al. | 2007
- W531
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The RCI server: rapid and accurate calculation of protein flexibility using chemical shiftsBerjanskii, Mark V. / Wishart, David S. et al. | 2007
- W538
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CytoSVM: an advanced server for identification of cytokine-receptor interactionsXu, Jin-Rui / Zhang, Jing-Xian / Han, Bu-Cong / Liang, Liang / Ji, Zhi-Liang et al. | 2007
- W543
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ProMateus--an open research approach to protein-binding sites analysisNeuvirth, Hani / Heinemann, Uri / Birnbaum, David / Tishby, Naftali / Schreiber, Gideon et al. | 2007
- W549
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MODPROPEP: a program for knowledge-based modeling of protein-peptide complexesKumar, Narendra / Mohanty, Debasisa et al. | 2007
- W556
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FastContact: a free energy scoring tool for protein-protein complex structuresChamp, P. Christoph / Camacho, Carlos J. et al. | 2007
- W561
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3D-partner: a web server to infer interacting partners and binding modelsChen, Yung-Chiang / Lo, Yu-Shu / Hsu, Wen-Chang / Yang, Jinn-Moon et al. | 2007
- W568
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Frog: a FRee Online druG 3D conformation generatorLeite, T. Bohme / Gomes, D. / Miteva, M.A. / Chomilier, J. / Villoutreix, B.O. / Tufféry, P. et al. | 2007
- W573
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firestar--prediction of functionally important residues using structural templates and alignment reliabilityLópez, Gonzalo / Valencia, Alfonso / Tress, Michael L. et al. | 2007
- W578
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RNABindR: a server for analyzing and predicting RNA-binding sites in proteinsTerribilini, Michael / Sander, Jeffry D. / Lee, Jae-Hyung / Zaback, Peter / Jernigan, Robert L. / Honavar, Vasant / Dobbs, Drena et al. | 2007
- W585
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WoLF PSORT: protein localization predictorHorton, Paul / Park, Keun-Joon / Obayashi, Takeshi / Fujita, Naoya / Harada, Hajime / Adams-Collier, C.J. / Nakai, Kenta et al. | 2007
- W588
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KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patternsWong, Yung-Hao / Lee, Tzong-Yi / Liang, Han-Kuen / Huang, Chia-Mao / Wang, Ting-Yuan / Yang, Yi-Huan / Chu, Chia-Huei / Huang, Hsien-Da / Ko, Ming-Tat / Hwang, Jenn-Kang et al. | 2007
- W595
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CanPredict: a computational tool for predicting cancer-associated missense mutationsKaminker, Joshua S. / Zhang, Yan / Watanabe, Colin / Zhang, Zemin et al. | 2007
- W599
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Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design toolSander, Jeffry D. / Zaback, Peter / Joung, J. Keith / Voytas, Daniel F. / Dobbs, Drena et al. | 2007
- W606
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LIPID MAPS online tools for lipid researchFahy, Eoin / Sud, Manish / Cotter, Dawn / Subramaniam, Shankar et al. | 2007
- W613
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MetaPath Online: a web server implementation of the network expansion algorithmHandorf, Thomas / Ebenhöh, Oliver et al. | 2007
- W619
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DEEP--A tool for differential expression effector predictionDegenhardt, Jost / Haubrock, Martin / Dönitz, Jürgen / Wingender, Edgar / Crass, Torsten et al. | 2007
- W625
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VisANT 3.0: new modules for pathway visualization, editing, prediction and constructionHu, Zhenjun / Ng, David M. / Yamada, Takuji / Chen, Chunnuan / Kawashima, Shuichi / Mellor, Joe / Linghu, Bolan / Kanehisa, Minoru / Stuart, Joshua M. / DeLisi, Charles et al. | 2007
- W633
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INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion eventsChen, Feng-Chi / Chen, Chueng-Jong / Chuang, Trees-Juen et al. | 2007
- W639
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RE-MuSiC: a tool for multiple sequence alignment with regular expression constraintsChung, Yun-Sheng / Lee, Wei-Hsun / Tang, Chuan Yi / Lu, Chin Lung et al. | 2007
- W645
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The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methodsMoretti, Sebastien / Armougom, Fabrice / Wallace, Iain M. / Higgins, Desmond G. / Jongeneel, Cornelius V. / Notredame, Cedric et al. | 2007
- W649
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PROMALS web server for accurate multiple protein sequence alignmentsPei, Jimin / Kim, Bong-Hyun / Tang, Ming / Grishin, Nick V. et al. | 2007
- W653
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COMPASS server for remote homology inferenceSadreyev, Ruslan I. / Tang, Ming / Kim, Bong-Hyun / Grishin, Nick V. et al. | 2007
- W659
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DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similaritiesFerrè, F. / Ponty, Y. / Lorenz, W. A. / Clote, Peter et al. | 2007
- W669
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Multiple whole genome alignments and novel biomedical applications at the VISTA portalBrudno, Michael / Poliakov, Alexander / Minovitsky, Simon / Ratnere, Igor / Dubchak, Inna et al. | 2007
- W675
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eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilitiesChikkagoudar, Satish / Roshan, Usman / Livesay, Dennis et al. | 2007
- W678
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BLASTO: a tool for searching orthologous groupsZhou, Yi / Landweber, Laura F. et al. | 2007
- W683
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SePaCS--a web-based application for classification of seroreactivity profilesKeller, Andreas / Comtesse, Nicole / Ludwig, Nicole / Meese, Eckart / Lenhof, Hans-Peter et al. | 2007
- W688
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BioBayesNet: a web server for feature extraction and Bayesian network modeling of biological sequence dataNikolajewa, Swetlana / Pudimat, Rainer / Hiller, Michael / Platzer, Matthias / Backofen, Rolf et al. | 2007
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EVALLER: a web server for in silico assessment of potential protein allergenicityBarrio, Alvaro Martinez / Soeria-Atmadja, Daniel / Nistér, Anders / Gustafsson, Mats G. / Hammerling, Ulf / Bongcam-Rudloff, Erik et al. | 2007
- W701
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ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometryZamdborg, Leonid / LeDuc, Richard D. / Glowacz, Kevin J. / Kim, Yong-Bin / Viswanathan, Vinayak / Spaulding, Ian T. / Early, Bryan P. / Bluhm, Eric J. / Babai, Shannee / Kelleher, Neil L. et al. | 2007
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The Multi-Q web server for multiplexed protein quantitationYu, Chuan-Yih / Tsui, Yin-Hao / Yian, Yi-Hwa / Sung, Ting-Yi / Hsu, Wen-Lian et al. | 2007
- W713
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DSHIFT: a web server for predicting DNA chemical shiftsLam, Sik Lok et al. | 2007
- W718
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CrystTwiV: a webserver for automated phase extension and refinement in X-ray crystallographyThireou, Trias / Atlamazoglou, Vassilis / Levakis, Manolis / Eliopoulos, Elias / Hountas, Athanassios / Tsoucaris, George / Bethanis, Kostas et al. | 2007