HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinoma (English)
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- New search for: Wang, Xiaosong
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- New search for: Zhang, Huagang
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In:
Nucleic acids research
;
34
, suppl_1
;
D607-
;
2006
- Article (Journal) / Electronic Resource
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Title:HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinoma
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Contributors:Wang, Xiaosong ( author ) / Zhao, Haitao ( author ) / Xu, Qingwen ( author ) / Jin, Weibo ( author ) / Liu, Changning ( author ) / Zhang, Huagang ( author ) / Huang, Zhibin ( author ) / Zhang, Xinyu ( author ) / Zhang, Yu ( author ) / Xin, Dianqi ( author )
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Published in:Nucleic acids research ; 34, suppl_1 ; D607-
-
Publisher:
- New search for: Oxford University Press
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Publication date:2006-01-01
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ISSN:
-
DOI:
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Type of media:Article (Journal)
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Type of material:Electronic Resource
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Language:English
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Source:
Table of contents – Volume 34, Issue suppl_1
The tables of contents are generated automatically and are based on the data records of the individual contributions available in the index of the TIB portal. The display of the Tables of Contents may therefore be incomplete.
- D1
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EDITORIALBateman, Alex et al. | 2006
- D3
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The Molecular Biology Database Collection: 2006 updateGalperin, Michael Y. et al. | 2006
- D6
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DDBJ in preparation for overview of research activities behind data submissionsOkubo, Kousaku / Sugawara, Hideaki / Gojobori, Takashi / Tateno, Yoshio et al. | 2006
- D10
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EMBL Nucleotide Sequence Database: developments in 2005Cochrane, Guy / Aldebert, Philippe / Althorpe, Nicola / Andersson, Mikael / Baker, Wendy / Baldwin, Alastair / Bates, Kirsty / Bhattacharyya, Sumit / Browne, Paul / van den Broek, Alexandra et al. | 2006
- D16
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GenBankBenson, Dennis A. / Karsch-Mizrachi, Ilene / Lipman, David J. / Ostell, James / Wheeler, David L. et al. | 2006
- D21
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ChimerDB--a knowledgebase for fusion sequencesKim, Namshin / Kim, Pora / Nam, Seungyoon / Shin, Seokmin / Lee, Sanghyuk et al. | 2006
- D25
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HUMHOT: a database of human meiotic recombination hot spotsNishant, K. T. / Kumar, Chetan / Rao, M. R. S. et al. | 2006
- D29
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The imprinted gene and parent-of-origin effect database now includes parental origin of de novo mutationsGlaser, Rivka L. / Ramsay, Joshua P. / Morison, Ian M. et al. | 2006
- D32
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ISfinder: the reference centre for bacterial insertion sequencesSiguier, P. / Perochon, J. / Lestrade, L. / Mahillon, J. / Chandler, M. et al. | 2006
- D37
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Transterm--extended search facilities and improved integration with other databasesJacobs, Grant H. / Stockwell, Peter A. / Tate, Warren P. / Brown, Chris M. et al. | 2006
- D41
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ASAP: a resource for annotating, curating, comparing, and disseminating genomic dataGlasner, Jeremy D. / Rusch, Michael / Liss, Paul / Plunkett, Guy / Cabot, Eric L. / Darling, Aaron / Anderson, Bradley D. / Infield-Harm, Paul / Gilson, Michael C. / Perna, Nicole T. et al. | 2006
- D46
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ASD: a bioinformatics resource on alternative splicingStamm, Stefan / Riethoven, Jean-Jack / Le Texier, Vincent / Gopalakrishnan, Chellappa / Kumanduri, Vasudev / Tang, Yesheng / Barbosa-Morais, Nuno L. / Thanaraj, Thangavel Alphonse et al. | 2006
- D56
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HOLLYWOOD: a comparative relational database of alternative splicingHolste, Dirk / Huo, George / Tung, Vivian / Burge, Christopher B. et al. | 2006
- D63
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ABS: a database of Annotated regulatory Binding Sites from orthologous promotersBlanco, Enrique / Farré, Domènec / Albà, M. Mar / Messeguer, Xavier / Guigó, Roderic et al. | 2006
- D68
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cisRED: a database system for genome-scale computational discovery of regulatory elementsRobertson, G. / Bilenky, M. / Lin, K. / He, A. / Yuen, W. / Dagpinar, M. / Varhol, R. / Teague, K. / Griffith, O. L. / Zhang, X. et al. | 2006
- D74
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DBD: a transcription factor prediction databaseKummerfeld, Sarah K. / Teichmann, Sarah A. et al. | 2006
- D82
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EPD in its twentieth year: towards complete promoter coverage of selected model organismsSchmid, Christoph D. / Perier, Rouaïda / Praz, Viviane / Bucher, Philipp et al. | 2006
- D86
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DBTSS: DataBase of Human Transcription Start Sites, progress report 2006Yamashita, Riu / Suzuki, Yutaka / Wakaguri, Hiroyuki / Tsuritani, Katsuki / Nakai, Kenta / Sugano, Sumio et al. | 2006
- D90
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HTPSELEX--a database of high-throughput SELEX libraries for transcription factor binding sitesJagannathan, Vidhya / Roulet, Emmanuelle / Delorenzi, Mauro / Bucher, Philipp et al. | 2006
- D95
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A new generation of JASPAR, the open-access repository for transcription factor binding site profilesVlieghe, Dominique / Sandelin, Albin / De Bleser, Pieter J. / Vleminckx, Kris / Wasserman, Wyeth W. / van Roy, Frans / Lenhard, Boris et al. | 2006
- D98
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MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental dataSun, Hao / Palaniswamy, Saranyan K. / Pohar, Twyla T. / Jin, Victor X. / Huang, Tim H.-M. / Davuluri, Ramana V. et al. | 2006
- D104
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TiProD: the Tissue-specific Promoter DatabaseChen, Xin / Wu, Jian-min / Hornischer, Klaus / Kel, Alexander / Wingender, Edgar et al. | 2006
- D108
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TRANSFAC(R) and its module TRANSCompel(R): transcriptional gene regulation in eukaryotesMatys, V. / Kel-Margoulis, O. V. / Fricke, E. / Liebich, I. / Land, S. / Barre-Dirrie, A. / Reuter, I. / Chekmenev, D. / Krull, M. / Hornischer, K. et al. | 2006
- D111
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ARED 3.0: the large and diverse AU-rich transcriptomeBakheet, Tala / Williams, Bryan R. G. / Khabar, Khalid S. A. et al. | 2006
- D115
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Argonaute--a database for gene regulation by mammalian microRNAsShahi, Priyanka / Loukianiouk, Serguei / Bohne-Lang, Andreas / Kenzelmann, Marc / Küffer, Stefan / Maertens, Sabine / Eils, Roland / Gröne, Herrmann-Josef / Gretz, Norbert / Brors, Benedikt et al. | 2006
- D119
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GRSDB: a database of quadruplex forming G-rich sequences in alternatively processed mammalian pre-mRNA sequencesKostadinov, Rumen / Malhotra, Nishtha / Viotti, Manuel / Shine, Robert / D'Antonio, Lawrence / Bagga, Paramjeet et al. | 2006
- D125
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IRESite: the database of experimentally verified IRES structures (www.iresite.org)Mokrejs, Martin / Vopálensky, Václav / Kolenaty, Ondrej / Masek, Tomás / Feketová, Zuzana / Sekyrová, Petra / Skaloudová, Barbora / Kríz, Vítezslav / Pospísek, Martin et al. | 2006
- D131
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MeRNA: a database of metal ion binding sites in RNA structuresStefan, Liliana R. / Zhang, Rui / Levitan, Aaron G. / Hendrix, Donna K. / Brenner, Steven E. / Holbrook, Stephen R. et al. | 2006
- D135
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miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomesHsu, Paul W.C. / Huang, Hsien-Da / Hsu, Sheng-Da / Lin, Li-Zen / Tsou, Ann-Ping / Tseng, Ching-Ping / Stadler, Peter F. / Washietl, Stefan / Hofacker, Ivo L. et al. | 2006
- D140
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miRBase: microRNA sequences, targets and gene nomenclatureGriffiths-Jones, Sam / Grocock, Russell J. / van Dongen, Stijn / Bateman, Alex / Enright, Anton J. et al. | 2006
- D145
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MODOMICS: a database of RNA modification pathwaysDunin-Horkawicz, Stanislaw / Czerwoniec, Anna / Gajda, Michal J. / Feder, Marcin / Grosjean, Henri / Bujnicki, Janusz M. et al. | 2006
- D150
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NPInter: the noncoding RNAs and protein related biomacromolecules interaction databaseWu, Tao / Wang, Jie / Liu, Changning / Zhang, Yong / Shi, Baochen / Zhu, Xiaopeng / Zhang, Zhihua / Skogerbø, Geir / Chen, Lan / Lu, Hongchao et al. | 2006
- D153
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RNAi Codex: a portal/database for short-hairpin RNA (shRNA) gene-silencing constructsOlson, A. / Sheth, N. / Lee, J. S. / Hannon, G. / Sachidanandam, R. et al. | 2006
- D158
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snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAsLestrade, Laurent / Weber, Michel J. et al. | 2006
- D163
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The tmRDB and SRPDB resourcesAndersen, Ebbe Sloth / Rosenblad, Magnus Alm / Larsen, Niels / Westergaard, Jesper Cairo / Burks, Jody / Wower, Iwona K. / Wower, Jacek / Gorodkin, Jan / Samuelsson, Tore / Zwieb, Christian et al. | 2006
- D169
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MIPS: analysis and annotation of proteins from whole genomes in 2005Mewes, H. W. / Frishman, D. / Mayer, K. F. X. / Münsterkötter, M. / Noubibou, O. / Pagel, P. / Rattei, T. / Oesterheld, M. / Ruepp, A. / Stümpflen, V. et al. | 2006
- D173
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Database resources of the National Center for Biotechnology InformationWheeler, David L. / Barrett, Tanya / Benson, Dennis A. / Bryant, Stephen H. / Canese, Kathi / Chetvernin, Vyacheslav / Church, Deanna M. / DiCuccio, Michael / Edgar, Ron / Federhen, Scott et al. | 2006
- D181
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TCDB: the Transporter Classification Database for membrane transport protein analyses and informationSaier, Milton H. / Tran, Can V. / Barabote, Ravi D. et al. | 2006
- D187
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The Universal Protein Resource (UniProt): an expanding universe of protein informationWu, Cathy H. / Apweiler, Rolf / Bairoch, Amos / Natale, Darren A. / Barker, Winona C. / Boeckmann, Brigitte / Ferro, Serenella / Gasteiger, Elisabeth / Huang, Hongzhan / Lopez, Rodrigo et al. | 2006
- D192
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CyBase: a database of cyclic protein sequence and structureMulvenna, Jason P. / Wang, Conan / Craik, David J. et al. | 2006
- D195
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PINT: Protein-protein Interactions Thermodynamic DatabaseKumar, M. D. Shaji / Gromiha, M. Michael et al. | 2006
- D199
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PPD v1.0--an integrated, web-accessible database of experimentally determined protein pKa valuesToseland, Christopher P. / McSparron, Helen / Davies, Matthew N. / Flower, Darren R. et al. | 2006
- D204
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ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactionsKumar, M. D. Shaji / Bava, K. Abdulla / Gromiha, M. Michael / Prabakaran, Ponraj / Kitajima, Koji / Uedaira, Hatsuho / Sarai, Akinori et al. | 2006
- D207
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The REFOLD database: a tool for the optimization of protein expression and refoldingChow, Michelle K. M. / Amin, Abdullah A. / Fulton, Kate F. / Fernando, Thushan / Kamau, Lawrence / Batty, Chris / Louca, Michael / Ho, Storm / Whisstock, James C. / Bottomley, Stephen P. et al. | 2006
- D213
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LOCATE: a mouse protein subcellular localization databaseFink, J. Lynn / Aturaliya, Rajith N. / Davis, Melissa J. / Zhang, Fasheng / Hanson, Kelly / Teasdale, Melvena S. / Kai, Chikatoshi / Kawai, Jun / Carninci, Piero / Hayashizaki, Yoshihide et al. | 2006
- D218
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NOPdb: Nucleolar Proteome DatabaseLeung, Anthony Kar Lun / Trinkle-Mulcahy, Laura / Lam, Yun Wah / Andersen, Jens S. / Mann, Matthias / Lamond, Angus I. et al. | 2006
- D221
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Nuclear Receptor Signaling Atlas (www.nursa.org): hyperlinking the nuclear receptor signaling communityLanz, Rainer B. / Jericevic, Zeljko / Zuercher, William J. / Watkins, Chris / Steffen, David L. / Margolis, Ronald / McKenna, Neil J. et al. | 2006
- D227
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The PROSITE databaseHulo, Nicolas / Bairoch, Amos / Bulliard, Virginie / Cerutti, Lorenzo / De Castro, Edouard / Langendijk-Genevaux, Petra S. / Pagni, Marco / Sigrist, Christian J. A. et al. | 2006
- D231
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SitesBase: a database for structure-based protein-ligand binding site comparisonsGold, Nicola D. / Jackson, Richard M. et al. | 2006
- D235
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BIOZON: a hub of heterogeneous biological dataBirkland, Aaron / Yona, Golan et al. | 2006
- D243
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MulPSSM: a database of multiple position-specific scoring matrices of protein domain familiesGowri, V. S. / Krishnadev, O. / Swamy, C. S. / Srinivasan, N. et al. | 2006
- D247
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Pfam: clans, web tools and servicesFinn, Robert D. / Mistry, Jaina / Schuster-Böckler, Benjamin / Griffiths-Jones, Sam / Hollich, Volker / Lassmann, Timo / Moxon, Simon / Marshall, Mhairi / Khanna, Ajay / Durbin, Richard et al. | 2006
- D252
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SIMAP: the similarity matrix of proteinsRattei, Thomas / Arnold, Roland / Tischler, Patrick / Lindner, Dominik / Stümpflen, Volker / Mewes, H. Werner et al. | 2006
- D257
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SMART 5: domains in the context of genomes and networksLetunic, Ivica / Copley, Richard R. / Pils, Birgit / Pinkert, Stefan / Schultz, Jörg / Bork, Peer et al. | 2006
- D261
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The EROP-Moscow oligopeptide databaseZamyatnin, Alexander A. / Borchikov, Alexander S. / Vladimirov, Michail G. / Voronina, Olga L. et al. | 2006
- D267
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LGICdb: a manually curated sequence database after the genomesDonizelli, Marco / Djite, Marie-Ange / Novère, Nicolas Le et al. | 2006
- D270
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MEROPS: the peptidase databaseRawlings, Neil D. / Morton, Fraser R. / Barrett, Alan J. et al. | 2006
- D273
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DMAPS: a database of multiple alignments for protein structuresGuda, Chittibabu / Pal, Lipika R. / Shindyalov, Ilya N. et al. | 2006
- D277
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Flexible Structural Neighborhood--a database of protein structural similarities and alignmentsLi, Zhanwen / Ye, Yuzhen / Godzik, Adam et al. | 2006
- D281
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Gene3D: modelling protein structure, function and evolutionYeats, Corin / Maibaum, Michael / Marsden, Russell / Dibley, Mark / Lee, David / Addou, Sarah / Orengo, Christine A. et al. | 2006
- D285
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iMOTdb--a comprehensive collection of spatially interacting motifs in proteinsPugalenthi, Ganesan / Bhaduri, Anirban / Sowdhamini, R. et al. | 2006
- D287
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E-MSD: improving data deposition and structure qualityTagari, M. / Tate, J. / Swaminathan, G. J. / Newman, R. / Naim, A. / Vranken, W. / Kapopoulou, A. / Hussain, A. / Fillon, J. / Henrick, K. et al. | 2006
- D291
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MODBASE: a database of annotated comparative protein structure models and associated resourcesPieper, Ursula / Eswar, Narayanan / Davis, Fred P. / Braberg, Hannes / Madhusudhan, M. S. / Rossi, Andrea / Marti-Renom, Marc / Karchin, Rachel / Webb, Ben M. / Eramian, David et al. | 2006
- D296
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The Database of Macromolecular Motions: new features added at the decade markFlores, Samuel / Echols, Nathaniel / Milburn, Duncan / Hespenheide, Brandon / Keating, Kevin / Lu, Jason / Wells, Stephen / Yu, Eric Z. / Thorpe, Michael / Gerstein, Mark et al. | 2006
- D302
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The RCSB PDB information portal for structural genomicsKouranov, Andrei / Xie, Lei / de la Cruz, Joanna / Chen, Li / Westbrook, John / Bourne, Philip E. / Berman, Helen M. et al. | 2006
- D306
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The PMDB Protein Model DatabaseCastrignanò, Tiziana / De Meo, Paolo D'Onorio / Cozzetto, Domenico / Talamo, Ivano Giuseppe / Tramontano, Anna et al. | 2006
- D310
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SCOPPI: a structural classification of protein-protein interfacesWinter, Christof / Henschel, Andreas / Kim, Wan Kyu / Schroeder, Michael et al. | 2006
- D315
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The SWISS-MODEL Repository: new features and functionalitiesKopp, Jürgen / Schwede, Torsten et al. | 2006
- D319
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The HUGO Gene Nomenclature Database, 2006 updatesEyre, Tina A. / Ducluzeau, Fabrice / Sneddon, Tam P. / Povey, Sue / Bruford, Elspeth A. / Lush, Michael J. et al. | 2006
- D322
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The Gene Ontology (GO) project in 2006Gene Ontology Consortium, et al. | 2006
- D327
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PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred treesWhelan, Simon / de Bakker, Paul I. W. / Quevillon, Emmanuel / Rodriguez, Nicolas / Goldman, Nick et al. | 2006
- D332
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The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwideLiolios, Konstantinos / Tavernarakis, Nektarios / Hugenholtz, Philip / Kyrpides, Nikos C. et al. | 2006
- D335
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xBASE, a collection of online databases for bacterial comparative genomicsChaudhuri, Roy R. / Pallen, Mark J. et al. | 2006
- D338
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ICDS database: interrupted CoDing sequences in prokaryotic genomesPerrodou, Emmanuel / Deshayes, Caroline / Muller, Jean / Schaeffer, Christine / Van Dorsselaer, Alain / Ripp, Raymond / Poch, Olivier / Reyrat, Jean-Marc / Lecompte, Odile et al. | 2006
- D344
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The integrated microbial genomes (IMG) systemMarkowitz, Victor M. / Korzeniewski, Frank / Palaniappan, Krishna / Szeto, Ernest / Werner, Greg / Padki, Anu / Zhao, Xueling / Dubchak, Inna / Hugenholtz, Philip / Anderson, Iain et al. | 2006
- D349
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INVHOGEN: a database of homologous invertebrate genesPaulsen, Ingo / von Haeseler, Arndt et al. | 2006
- D354
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From genomics to chemical genomics: new developments in KEGGKanehisa, Minoru / Goto, Susumu / Hattori, Masahiro / Aoki-Kinoshita, Kiyoko F. / Itoh, Masumi / Kawashima, Shuichi / Katayama, Toshiaki / Araki, Michihiro / Hirakawa, Mika et al. | 2006
- D358
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ODB: a database of operons accumulating known operons across multiple genomesOkuda, Shujiro / Katayama, Toshiaki / Kawashima, Shuichi / Goto, Susumu / Kanehisa, Minoru et al. | 2006
- D363
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OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groupsChen, Feng / Mackey, Aaron J. / Stoeckert, Christian J. / Roos, David S. et al. | 2006
- D369
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PUMA2--grid-based high-throughput analysis of genomes and metabolic pathwaysMaltsev, Natalia / Glass, Elizabeth / Sulakhe, Dinanath / Rodriguez, Alexis / Syed, Mustafa H. / Bompada, Tanuja / Zhang, Yi / D'Souza, Mark et al. | 2006
- D373
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SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomesWang, Huiquan / Kaloper, Miroslava / Benham, Craig J. et al. | 2006
- D379
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VMD: a community annotation database for oomycetes and microbial genomesTripathy, Sucheta / Pandey, Varun N. / Fang, Bing / Salas, Fidel / Tyler, Brett M. et al. | 2006
- D382
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DPVweb: a comprehensive database of plant and fungal virus genes and genomesAdams, Michael J. / Antoniw, John F. et al. | 2006
- D386
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VIPERdb: a relational database for structural virologyShepherd, Craig M. / Borelli, Ian A. / Lander, Gabriel / Natarajan, Padmaja / Siddavanahalli, Vinay / Bajaj, Chandrajit / Johnson, John E. / Brooks, Charles L. / Reddy, Vijay S. et al. | 2006
- D390
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Megx.net--database resources for marine ecological genomicsLombardot, Thierry / Kottmann, Renzo / Pfeffer, Hauke / Richter, Michael / Teeling, Hanno / Quast, Christian / Glöckner, Frank Oliver et al. | 2006
- D394
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RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditionsSalgado, Heladia / Gama-Castro, Socorro / Peralta-Gil, Martín / Díaz-Peredo, Edgar / Sánchez-Solano, Fabiola / Santos-Zavaleta, Alberto / Martínez-Flores, Irma / Jiménez-Jacinto, Verónica / Bonavides-Martínez, César / Segura-Salazar, Juan et al. | 2006
- D398
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ShiBASE: an integrated database for comparative genomics of ShigellaYang, Jian / Chen, Lihong / Yu, Jun / Sun, Lilian / Jin, Qi et al. | 2006
- D402
-
LEGER: knowledge database and visualization tool for comparative genomics of pathogenic and non-pathogenic Listeria speciesDieterich, Guido / Kärst, Uwe / Fischer, Elmar / Wehland, Jürgen / Jänsch, Lothar et al. | 2006
- D407
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The UCSC Archaeal Genome BrowserSchneider, Kevin L. / Pollard, Katherine S. / Baertsch, Robert / Pohl, Andy / Lowe, Todd M. et al. | 2006
- D411
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Human protein reference database--2006 updateMishra, Gopa R. / Suresh, M. / Kumaran, K. / Kannabiran, N. / Suresh, Shubha / Bala, P. / Shivakumar, K. / Anuradha, N. / Reddy, Raghunath / Raghavan, T. Madhan et al. | 2006
- D415
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The LIFEdb database in 2006Mehrle, Alexander / Rosenfelder, Heiko / Schupp, Ingo / del Val, Coral / Arlt, Dorit / Hahne, Florian / Bechtel, Stephanie / Simpson, Jeremy / Hofmann, Oliver / Hide, Winston et al. | 2006
- D419
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CryptoDB: a Cryptosporidium bioinformatics resource updateHeiges, Mark / Wang, Haiming / Robinson, Edward / Aurrecoechea, Cristina / Gao, Xin / Kaluskar, Nivedita / Rhodes, Philippa / Wang, Sammy / He, Cong-Zhou / Su, Yanqi et al. | 2006
- D423
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dictyBase, the model organism database for Dictyostelium discoideumChisholm, Rex L. / Gaudet, Pascale / Just, Eric M. / Pilcher, Karen E. / Fey, Petra / Merchant, Sohel N. / Kibbe, Warren A. et al. | 2006
- D428
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TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruziAgüero, Fernán / Zheng, Wenlong / Weatherly, D. Brent / Mendes, Pablo / Kissinger, Jessica C. et al. | 2006
- D432
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Genolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeastsSherman, David / Durrens, Pascal / Iragne, Florian / Beyne, Emmanuelle / Nikolski, Macha / Souciet, Jean-Luc et al. | 2006
- D436
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MPact: the MIPS protein interaction resource on yeastGüldener, Ulrich / Münsterkötter, Martin / Oesterheld, Matthias / Pagel, Philipp / Ruepp, Andreas / Mewes, Hans-Werner / Stümpflen, Volker et al. | 2006
- D442
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Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genomeHirschman, Jodi E. / Balakrishnan, Rama / Christie, Karen R. / Costanzo, Maria C. / Dwight, Selina S. / Engel, Stacia R. / Fisk, Dianna G. / Hong, Eurie L. / Livstone, Michael S. / Nash, Robert et al. | 2006
- D446
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The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiaeTeixeira, Miguel C. / Monteiro, Pedro / Jain, Pooja / Tenreiro, Sandra / Fernandes, Alexandra R. / Mira, Nuno P. / Alenquer, Marta / Freitas, Ana T. / Oliveira, Arlindo L. / Sá-Correia, Isabel et al. | 2006
- D452
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Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order BrowserByrne, Kevin P. / Wolfe, Kenneth H. et al. | 2006
- D456
-
FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearumGüldener, Ulrich / Mannhaupt, Gertrud / Münsterkötter, Martin / Haase, Dirk / Oesterheld, Matthias / Stümpflen, Volker / Mewes, Hans-Werner / Adam, Gerhard et al. | 2006
- D459
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PHI-base: a new database for pathogen host interactionsWinnenburg, Rainer / Baldwin, Thomas K. / Urban, Martin / Rawlings, Chris / Köhler, Jacob / Hammond-Kosack, Kim E. et al. | 2006
- D465
-
Phytophthora functional genomics database (PFGD): functional genomics of phytophthora-plant interactionsGajendran, Kamal / Gonzales, Michael D. / Farmer, Andrew / Archuleta, Eric / Win, Joe / Waugh, Mark E. / Kamoun, Sophien et al. | 2006
- D471
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SGCEdb: a flexible database and web interface integrating experimental results and analysis for structural genomics focusing on Caenorhabditis elegansJohnson, David H. / Tsao, Jun / Luo, Ming / Carson, Mike et al. | 2006
- D475
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WormBase: better software, richer contentSchwarz, Erich M. / Antoshechkin, Igor / Bastiani, Carol / Bieri, Tamberlyn / Blasiar, Darin / Canaran, Payan / Chan, Juancarlos / Chen, Nansheng / Chen, Wen J. / Davis, Paul et al. | 2006
- D479
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FLIGHT: database and tools for the integration and cross-correlation of large-scale RNAi phenotypic datasetsSims, David / Bursteinas, Borisas / Gao, Qiong / Zvelebil, Marketa / Baum, Buzz et al. | 2006
- D484
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FlyBase: anatomical data, images and queriesGrumbling, Gary / Strelets, Victor / The FlyBase Consortium, et al. | 2006
- D489
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FlyRNAi: the Drosophila RNAi screening center databaseFlockhart, Ian / Booker, Matthew / Kiger, Amy / Boutros, Michael / Armknecht, Susan / Ramadan, Nadire / Richardson, Kris / Xu, Andrew / Perrimon, Norbert / Mathey-Prevot, Bernard et al. | 2006
- D495
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StellaBase: The Nematostella vectensis Genomics DatabaseSullivan, James C. / Ryan, Joseph F. / Watson, James A. / Webb, Jeramy / Mullikin, James C. / Rokhsar, Daniel / Finnerty, John R. et al. | 2006
- D500
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Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila researchStover, Nicholas A. / Krieger, Cynthia J. / Binkley, Gail / Dong, Qing / Fisk, Dianna G. / Nash, Robert / Sethuraman, Anand / Weng, Shuai / Cherry, J. Michael et al. | 2006
- D504
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Pathguide: a Pathway Resource ListBader, Gary D. / Cary, Michael P. / Sander, Chris et al. | 2006
- D507
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LMPD: LIPID MAPS proteome databaseCotter, Dawn / Maer, Andreia / Guda, Chittibabu / Saunders, Brian / Subramaniam, Shankar et al. | 2006
- D511
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MetaCyc: a multiorganism database of metabolic pathways and enzymesCaspi, Ron / Foerster, Hartmut / Fulcher, Carol A. / Hopkinson, Rebecca / Ingraham, John / Kaipa, Pallavi / Krummenacker, Markus / Paley, Suzanne / Pick, John / Rhee, Seung Y. et al. | 2006
- D517
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The University of Minnesota Biocatalysis/Biodegradation Database: the first decadeEllis, Lynda B. M. / Roe, Dave / Wackett, Lawrence P. et al. | 2006
- D522
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AffinDB: a freely accessible database of affinities for protein-ligand complexes from the PDBBlock, Peter / Sotriffer, Christoph A. / Dramburg, Ingo / Klebe, Gerhard et al. | 2006
- D527
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pSTIING: a 'systems' approach towards integrating signalling pathways, interaction and transcriptional regulatory networks in inflammation and cancerNg, Aylwin / Bursteinas, Borisas / Gao, Qiong / Mollison, Ewan / Zvelebil, Marketa et al. | 2006
- D535
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BioGRID: a general repository for interaction datasetsStark, Chris / Breitkreutz, Bobby-Joe / Reguly, Teresa / Boucher, Lorrie / Breitkreutz, Ashton / Tyers, Mike et al. | 2006
- D540
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EndoNet: an information resource about endocrine networksPotapov, Anatolij / Liebich, Ines / Dönitz, Jürgen / Schwarzer, Knut / Sasse, Nicole / Schoeps, Torsten / Crass, Torsten / Wingender, Edgar et al. | 2006
- D546
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TRANSPATH(R): an information resource for storing and visualizing signaling pathways and their pathological aberrationsKrull, Mathias / Pistor, Susanne / Voss, Nico / Kel, Alexander / Reuter, Ingmar / Kronenberg, Deborah / Michael, Holger / Schwarzer, Knut / Potapov, Anatolij / Choi, Claudia et al. | 2006
- D552
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DBTGR: a database of tunicate promoters and their regulatory elementsSierro, Nicolas / Kusakabe, Takehiro / Park, Keun-Joon / Yamashita, Riu / Kinoshita, Kengo / Nakai, Kenta et al. | 2006
- D556
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Ensembl 2006Birney, E. / Andrews, D. / Caccamo, M. / Chen, Y. / Clarke, L. / Coates, G. / Cox, T. / Cunningham, F. / Curwen, V. / Cutts, T. et al. | 2006
- D562
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The Mouse Genome Database (MGD): updates and enhancementsBlake, Judith A. / Eppig, Janan T. / Bult, Carol J. / Kadin, James A. / Richardson, Joel E. / Mouse Genome Database Group, et al. | 2006
- D568
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The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular contextRuepp, Andreas / Doudieu, Octave Noubibou / van den Oever, Jos / Brauner, Barbara / Dunger-Kaltenbach, Irmtraud / Fobo, Gisela / Frishman, Goar / Montrone, Corinna / Skornia, Christine / Wanka, Steffi et al. | 2006
- D572
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TreeFam: a curated database of phylogenetic trees of animal gene familiesLi, Heng / Coghlan, Avril / Ruan, Jue / Coin, Lachlan James / Hériché, Jean-Karim / Osmotherly, Lara / Li, Ruiqiang / Liu, Tao / Zhang, Zhang / Bolund, Lars et al. | 2006
- D581
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The Zebrafish Information Network: the zebrafish model organism databaseSprague, Judy / Bayraktaroglu, Leyla / Clements, Dave / Conlin, Tom / Fashena, David / Frazer, Ken / Haendel, Melissa / Howe, Douglas G. / Mani, Prita / Ramachandran, Sridhar et al. | 2006
- D586
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QTL MatchMaker: a multi-species quantitative trait loci (QTL) database and query system for annotation of genes and QTLStar, Kremena V. / Song, Quingbin / Zhu, Andy / Böttinger, Erwin P. et al. | 2006
- D590
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The UCSC Genome Browser Database: update 2006Hinrichs, A. S. / Karolchik, D. / Baertsch, R. / Barber, G. P. / Bejerano, G. / Clawson, H. / Diekhans, M. / Furey, T. S. / Harte, R. A. / Hsu, F. et al. | 2006
- D599
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OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBILenffer, Johann / Nicholas, Frank W. / Castle, Kao / Rao, Arjun / Gregory, Stefan / Poidinger, Michael / Mailman, Matthew D. / Ranganathan, Shoba et al. | 2006
- D602
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CTGA: the database for genetic disorders in Arab populationsTadmouri, Ghazi O. / Ali, Mahmoud Taleb Al / Ali, Sarah Al-Haj / Khaja, Najib Al et al. | 2006
- D607
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HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinomaWang, Xiaosong / Zhao, Haitao / Xu, Qingwen / Jin, Weibo / Liu, Changning / Zhang, Huagang / Huang, Zhibin / Zhang, Xinyu / Zhang, Yu / Xin, Dianqi et al. | 2006
- D613
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ITTACA: a new database for integrated tumor transcriptome array and clinical data analysisElfilali, Adil / Lair, Séverine / Verbeke, Catia / La Rosa, Philippe / Radvanyi, François / Barillot, Emmanuel et al. | 2006
- D617
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SNP500Cancer: a public resource for sequence validation, assay development, and frequency analysis for genetic variation in candidate genesPacker, Bernice R. / Yeager, Meredith / Burdett, Laura / Welch, Robert / Beerman, Michael / Qi, Liqun / Sicotte, Hugues / Staats, Brian / Acharya, Mekhala / Crenshaw, Andrew et al. | 2006
- D622
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dbPTM: an information repository of protein post-translational modificationLee, Tzong-Yi / Huang, Hsien-Da / Hung, Jui-Hung / Huang, Hsi-Yuan / Yang, Yuh-Shyong / Wang, Tzu-Hao et al. | 2006
- D628
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BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expressionOgasawara, Osamu / Otsuji, Makiko / Watanabe, Kouji / Iizuka, Takayasu / Tamura, Takuro / Hishiki, Teruyoshi / Kawamoto, Shoko / Okubo, Kousaku et al. | 2006
- D632
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CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysisKawaji, Hideya / Kasukawa, Takeya / Fukuda, Shiro / Katayama, Shintaro / Kai, Chikatoshi / Kawai, Jun / Carninci, Piero / Hayashizaki, Yoshihide et al. | 2006
- D637
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EMAGE: a spatial database of gene expression patterns during mouse embryo developmentChristiansen, Jeffrey H. / Yang, Yiya / Venkataraman, Shanmugasundaram / Richardson, Lorna / Stevenson, Peter / Burton, Nicholas / Baldock, Richard A. / Davidson, Duncan R. et al. | 2006
- D642
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The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouseNord, Alex S. / Chang, Patricia J. / Conklin, Bruce R. / Cox, Antony V. / Harper, Courtney A. / Hicks, Geoffrey G. / Huang, Conrad C. / Johns, Susan J. / Kawamoto, Michiko / Liu, Songyan et al. | 2006
- D649
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PepSeeker: a database of proteome peptide identifications for investigating fragmentation patternsMcLaughlin, Thomas / Siepen, Jennifer A. / Selley, Julian / Lynch, Jennifer A. / Lau, King Wai / Yin, Hujun / Gaskell, Simon J. / Hubbard, Simon J. et al. | 2006
- D655
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The PeptideAtlas projectDesiere, Frank / Deutsch, Eric W. / King, Nichole L. / Nesvizhskii, Alexey I. / Mallick, Parag / Eng, Jimmy / Chen, Sharon / Eddes, James / Loevenich, Sandra N. / Aebersold, Ruedi et al. | 2006
- D659
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PRIDE: a public repository of protein and peptide identifications for the proteomics communityJones, Philip / Côté, Richard G. / Martens, Lennart / Quinn, Antony F. / Taylor, Chris F. / Derache, William / Hermjakob, Henning / Apweiler, Rolf et al. | 2006
- D664
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AOBase: a database for antisense oligonucleotides selection and designBo, Xiaochen / Lou, Shaoke / Sun, Daochun / Yang, Jing / Wang, Shengqi et al. | 2006
- D668
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DrugBank: a comprehensive resource for in silico drug discovery and explorationWishart, David S. / Knox, Craig / Guo, An Chi / Shrivastava, Savita / Hassanali, Murtaza / Stothard, Paul / Chang, Zhan / Woolsey, Jennifer et al. | 2006
- D673
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GLIDA: GPCR-ligand database for chemical genomic drug discoveryOkuno, Yasushi / Yang, Jiyoon / Taneishi, Kei / Yabuuchi, Hiroaki / Tsujimoto, Gozoh et al. | 2006
- D678
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SuperNatural: a searchable database of available natural compoundsDunkel, Mathias / Fullbeck, Melanie / Neumann, Stefanie / Preissner, Robert et al. | 2006
- D684
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RTPrimerDB: the real-time PCR primer and probe database, major update 2006Pattyn, Filip / Robbrecht, Piet / De Paepe, Anne / Speleman, Frank / Vandesompele, Jo et al. | 2006
- D689
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BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systemsLe Novère, Nicolas / Bornstein, Benjamin / Broicher, Alexander / Courtot, Mélanie / Donizelli, Marco / Dharuri, Harish / Li, Lu / Sauro, Herbert / Schilstra, Maria / Shapiro, Bruce et al. | 2006
- D692
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ChloroplastDB: the Chloroplast Genome DatabaseCui, Liying / Veeraraghavan, Narayanan / Richter, Alexander / Wall, Kerr / Jansen, Robert K. / Leebens-Mack, Jim / Makalowska, Izabela / dePamphilis, Claude W. et al. | 2006
- D697
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GOBASE--a database of organelle and bacterial genome informationO'Brien, Emmet A. / Zhang, Yue / Yang, LiuSong / Wang, Eric / Marie, Veronique / Lang, B. Franz / Burger, Gertraud et al. | 2006
- D700
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HvrBase++: a phylogenetic database for primate speciesKohl, Jochen / Paulsen, Ingo / Laubach, Thomas / Radtke, Achim / von Haeseler, Arndt et al. | 2006
- D705
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MitoP2: the mitochondrial proteome database--now including mouse dataProkisch, H. / Andreoli, C. / Ahting, U. / Heiss, K. / Ruepp, A. / Scharfe, C. / Meitinger, T. et al. | 2006
- D712
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DRASTIC--INSIGHTS: querying information in a plant gene expression databaseButton, Davina K. / Gartland, Kevan M. A. / Ball, Leslie D. / Natanson, Louis / Gartland, Jill S. / Lyon, Gary D. et al. | 2006
- D717
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Gramene: a bird's eye view of cereal genomesJaiswal, Pankaj / Ni, Junjian / Yap, Immanuel / Ware, Doreen / Spooner, William / Youens-Clark, Ken / Ren, Liya / Liang, Chengzhi / Zhao, Wei / Ratnapu, Kiran et al. | 2006
- D724
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Phytome: a platform for plant comparative genomicsHartmann, Stefanie / Lu, Dihui / Phillips, Jason / Vision, Todd J. et al. | 2006
- D731
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Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNANakano, Mayumi / Nobuta, Kan / Vemaraju, Kalyan / Tej, Shivakundan Singh / Skogen, Jeremy W. / Meyers, Blake C. et al. | 2006
- D736
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OryGenesDB: a database for rice reverse geneticsDroc, G. / Ruiz, M. / Larmande, P. / Pereira, A. / Piffanelli, P. / Morel, J. B. / Dievart, A. / Courtois, B. / Guiderdoni, E. / Périn, C. et al. | 2006
- D741
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The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome informationOhyanagi, Hajime / Tanaka, Tsuyoshi / Sakai, Hiroaki / Shigemoto, Yasumasa / Yamaguchi, Kaori / Habara, Takuya / Fujii, Yasuyuki / Antonio, Baltazar A. / Nagamura, Yoshiaki / Imanishi, Tadashi et al. | 2006
- D745
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RMD: a rice mutant database for functional analysis of the rice genomeZhang, Jianwei / Li, Caishun / Wu, Changyin / Xiong, Lizhong / Chen, Guoxing / Zhang, Qifa / Wang, Shiping et al. | 2006
- D749
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mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciencesIngman, Max / Gyllensten, Ulf et al. | 2006
- D752
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Panzea: a database and resource for molecular and functional diversity in the maize genomeZhao, Wei / Canaran, Payan / Jurkuta, Rebecca / Fulton, Theresa / Glaubitz, Jeffrey / Buckler, Edward / Doebley, John / Gaut, Brandon / Goodman, Major / Holland, Jim et al. | 2006
- D758
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The Soybean Genome Database (SoyGD): a browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine maxShultz, Jeffry L. / Kurunam, Deepak / Shopinski, Kay / Iqbal, M. Javed / Kazi, Samreen / Zobrist, Kimberley / Bashir, Rabia / Yaegashi, Satsuki / Lavu, Nagajyothi / Afzal, Ahmed J. et al. | 2006
- D766
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Tomato Expression Database (TED): a suite of data presentation and analysis toolsFei, Zhangjun / Tang, Xuemei / Alba, Rob / Giovannoni, James et al. | 2006
- D771
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The TIGR Maize DatabaseChan, Agnes P. / Pertea, Geo / Cheung, Foo / Lee, Dan / Zheng, Li / Whitelaw, Cathy / Pontaroli, Ana C. / SanMiguel, Phillip / Yuan, Yinan / Bennetzen, Jeffrey et al. | 2006
- D777
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Epitome: database of structure-inferred antigenic epitopesSchlessinger, Avner / Ofran, Yanay / Yachdav, Guy / Rost, Burkhard et al. | 2006
- D781
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IMGT/LIGM-DB, the IMGT(R) comprehensive database of immunoglobulin and T cell receptor nucleotide sequencesGiudicelli, Véronique / Duroux, Patrice / Ginestoux, Chantal / Folch, Géraldine / Jabado-Michaloud, Joumana / Chaume, Denys / Lefranc, Marie-Paule et al. | 2006